Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006948.1

Orthogroup ID

OG0011628

Physical Location & Seq

Genomic Coordinates Reverse (-)

49709 .. 50837

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006948.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggccagcaagattggactctgcgacacgactcgttctctaactagtttcgggggatctcgagcctctcgtagtcgccgtcgaagacctcgacgtgcagtaacagattcattcaatgccagtcgtggcgttgccattatggacggcgggaacattccgggcccaacttcccaaaccctagtgctccaaattcttccaccatgccatgaacggcgtagctgggcctgggctacttcgatttggcgtcggcaacacagtcaagatgaaaccgctcatattctggttgagttattggaggtggaaatcacatcaatcgttttcctcaaaggaatttatcctgcaggtgcttttgagagaaggaagtacatgaatttggttgttcatagaactcggcaccctgagctcagagattatatccattctgctgtctcaggacttcttccttttataaaaaagctattgctagttgttatcattgctgagattcggaagaacaagattggctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

169

Amino Acids

19.16

Weight (kDa)

10.86

Isoelectric Point (pI)

73.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011628)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030373
rosa_multiflora	Rmu_sc0003880.1_g000025 Rmu_sc0006948.1_g000011 Rmu_sc0032105.1_g000001
rosa_rugosa	Rorug01G0189900 Rorug01G0190000 Rorug01G0190100 Rorug06G0061300 Rorug06G0061400
rosa_samantha	Rh1AG125400 Rh3BG351200 Rh3CG055900 Rh5AG334200 Rh5BG132800 Rh5DG508200 Rh6AG163600 Rh6BG167400 Rh6CG161200 Rh6DG152800 Rh6DG154100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	449
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	393
AccBSI	CCGCTC	1 cut(s)	272
AciI	CCGC	2 cut(s)	147, 270
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	189, 330, 370
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	115
AhlI	ACTAGT	1 cut(s)	44
AjiI	CACGTC	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	219, 403, 457
AluI	AGCT	3 cut(s)	219, 403, 457
Alw21I	GWGCWC	2 cut(s)	186, 405
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	3 cut(s)	3, 160, 222
ApaI	GGGCCC	1 cut(s)	164
ApoI	RAATTY	3 cut(s)	189, 330, 370
AspS9I	GGNCC	3 cut(s)	160, 161, 222
AsuC2I	CCSGG	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	393
BanII	GRGCYC	2 cut(s)	164, 405
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	2 cut(s)	186, 405
BceAI	ACGGC	3 cut(s)	63, 160, 227
BciT130I	CCWGG	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	433
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	3 cut(s)	45, 179, 464
BfmI	CTRYAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	159, 226
BmeT110I	CYCGRG	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	3 cut(s)	160, 161, 222
BmiI	GGNNCC	2 cut(s)	162, 395
BmrFI	CCNGG	2 cut(s)	159, 226
BpiI	GAAGAC	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	4 cut(s)	390, 418, 444, 471
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	5, 162, 224
BshNI	GGYRCC	1 cut(s)	393
BsiHKAI	GWGCWC	2 cut(s)	186, 405
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	5, 162, 224
BsoBI	CYCGRG	1 cut(s)	60
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	164, 186, 405
Bsp143I	GATC	1 cut(s)	56
BspACI	CCGC	2 cut(s)	147, 270
BspANI	GGCC	3 cut(s)	5, 162, 224
BspCNI	CTCAG	4 cut(s)	391, 417, 443, 472
BspLI	GGNNCC	2 cut(s)	162, 395
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	393
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	56
BssNI	GRCGYC	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	399, 404, 430, 480
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	157, 224
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	5, 162, 224
BtrI	CACGTC	1 cut(s)	95
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	160, 161, 222
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	3 cut(s)	201, 206, 367
CviJI	RGCY	9 cut(s)	5, 65, 162, 219, 224, 230, 403, 457, 504
CviKI_1	RGCY	9 cut(s)	5, 65, 162, 219, 224, 230, 403, 457, 504
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	4 cut(s)	399, 404, 430, 480
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	403
Eco24I	GRGCYC	2 cut(s)	164, 405
Eco53kI	GAGCTC	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	224
EcoT38I	GRGCYC	2 cut(s)	164, 405
FaeI	CATG	3 cut(s)	204, 209, 370
FaiI	YATR	8 cut(s)	140, 202, 207, 276, 368, 384, 414, 449
FatI	CATG	3 cut(s)	200, 205, 366
FauI	CCCGC	1 cut(s)	140
FriOI	GRGCYC	2 cut(s)	164, 405
FspBI	CTAG	3 cut(s)	45, 179, 464
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	3 cut(s)	5, 162, 224
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	204, 209, 370
HinfI	GANTC	4 cut(s)	18, 31, 107, 484
HpaII	CCGG	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	407, 489
Hpy188III	TCNNGA	3 cut(s)	60, 260, 432
Hpy99I	CGWCG	3 cut(s)	84, 96, 249
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	98, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	4 cut(s)	399, 404, 430, 480
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	204, 209, 370
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	189
MaeI	CTAG	3 cut(s)	45, 179, 464
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	58
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	1 cut(s)	56
MboII	GAAGA	4 cut(s)	96, 185, 431, 502
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	3 cut(s)	164, 186, 405
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	189, 330, 370
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	12, 25
MnlI	CCTC	4 cut(s)	76, 99, 289, 332
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	159, 226
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	400
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	3 cut(s)	204, 209, 370
NlaIV	GGNNCC	2 cut(s)	162, 395
NmeAIII	GCCGAG	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	3 cut(s)	67, 76, 88
PfeI	GAWTC	2 cut(s)	107, 484
PleI	GAGTC	2 cut(s)	12, 25
PpsI	GAGTC	2 cut(s)	12, 25
PsiI	TTATAA	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	162, 395
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	3 cut(s)	160, 161, 222
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	3 cut(s)	160, 161, 222
SbfI	CCTGCAGG	1 cut(s)	343
SchI	GAGTC	2 cut(s)	12, 25
ScrFI	CCNGG	2 cut(s)	159, 226
SdaI	CCTGCAGG	1 cut(s)	343
SduI	GDGCHC	3 cut(s)	164, 186, 405
SetI	ASST	7 cut(s)	91, 97, 221, 300, 346, 405, 459
SfcI	CTRYAG	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SpeI	ACTAGT	1 cut(s)	44
Sse8387I	CCTGCAGG	1 cut(s)	343
Sse9I	AATT	3 cut(s)	189, 330, 370
SsiI	CCGC	2 cut(s)	147, 270
SspMI	CTAG	3 cut(s)	45, 179, 464
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	157, 224
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	4 cut(s)	61, 82, 91, 236
TasI	AATT	3 cut(s)	189, 330, 370
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	107, 484
TspDTI	ATGAA	5 cut(s)	99, 222, 279, 371, 383
XapI	RAATTY	3 cut(s)	189, 330, 370
XhoI	CTCGAG	1 cut(s)	60
XspI	CTAG	3 cut(s)	45, 179, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.