Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011628

Physical Location & Seq

Genomic Coordinates Reverse (-)

22520680 .. 22535226

Gene Structure 14547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG152800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCAGTGGAGCTGTCGTGCGTTGCTGGGTTTGCAGGGGCCACGCGGGGATGGGTTGCTGTGTCGGTGCTCGGTGCAGCAGCAGGCGATCCGACTGGGCACGCTGGAGGCCGGTCTGGAGGGATGCTGAGGCCAGTGGCTGAACATAATAGCTGGAACATGTACTCAAGCTTAAATAAGAGCCATAGAGCACTTCCTTGGACTTCTAGAAATCATATGACTCTGCGTTCTGCAATGGCTGTCGAGTTGCCAATCTTCTTGAATGATAAAAGGTTGCTATCCACACAAGTAAAAGCACCTGCCCAAGTAAGACAAATGGGTGCTGACGGCAAAATGGGACAAGAGGCAGCTACACTTGAGGATTCTCCAATTGAGTCCTTGCTGGAGGTAGCCTACTCCCTTTTCCAAACCTCAATTGCATTTTTGGACTATTCAAATGATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

148

Amino Acids

15.81

Weight (kDa)

6.4

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011628)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030373
rosa_multiflora	Rmu_sc0003880.1_g000025 Rmu_sc0006948.1_g000011 Rmu_sc0032105.1_g000001
rosa_rugosa	Rorug01G0189900 Rorug01G0190000 Rorug01G0190100 Rorug06G0061300 Rorug06G0061400
rosa_samantha	Rh1AG125400 Rh3BG351200 Rh3CG055900 Rh5AG334200 Rh5BG132800 Rh5DG508200 Rh6AG163600 Rh6BG167400 Rh6CG161200 Rh6DG152800 Rh6DG154100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccII	CGCG	1 cut(s)	46
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	262, 435
AluBI	AGCT	4 cut(s)	13, 153, 171, 350
AluI	AGCT	4 cut(s)	13, 153, 171, 350
Alw21I	GWGCWC	2 cut(s)	72, 193
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	3 cut(s)	39, 109, 131
ApeKI	GCWGC	3 cut(s)	77, 80, 347
AspS9I	GGNCC	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	72, 193
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	89, 92, 359
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	3 cut(s)	78, 81, 348
BlsI	GCNGC	3 cut(s)	79, 82, 349
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	105
BpmI	CTGGAG	3 cut(s)	126, 138, 404
Bpu10I	CCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	151, 377
BsaJI	CCNNGG	1 cut(s)	197
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	100, 134
Bse3DI	GCAATG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	2 cut(s)	56, 129
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	2 cut(s)	100, 134
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	89, 92, 359
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	3 cut(s)	41, 111, 133
BsiHKAI	GWGCWC	2 cut(s)	72, 193
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	41, 111, 133
Bsp1286I	GDGCHC	3 cut(s)	72, 102, 193
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	3 cut(s)	41, 111, 133
BspCNI	CTCAG	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	100, 134
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	85, 102
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	56, 129
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	102
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	89, 92, 359
BsuRI	GGCC	3 cut(s)	41, 111, 133
BtsCI	GGATG	2 cut(s)	56, 129
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 141
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	85, 102
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	160
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	163
FaiI	YATR	5 cut(s)	147, 161, 186, 216, 218
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	1 cut(s)	159
FauI	CCCGC	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	78, 81, 348
FokI	GGATG	2 cut(s)	63, 136
Fsp4HI	GCNGC	3 cut(s)	78, 81, 348
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	3 cut(s)	78, 81, 348
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	3 cut(s)	126, 138, 404
HaeIII	GGCC	3 cut(s)	41, 111, 133
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	169
HinfI	GANTC	3 cut(s)	220, 362, 374
HpaII	CCGG	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	117, 207, 259
HpyCH4V	TGCA	4 cut(s)	35, 77, 233, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	89, 92, 359
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	207
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	247
MfeI	CAATTG	2 cut(s)	369, 414
MhlI	GDGCHC	3 cut(s)	72, 102, 193
MluCI	AATT	2 cut(s)	369, 414
MlyI	GAGTC	2 cut(s)	214, 383
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	101, 113, 123, 337, 352, 379, 421
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	112
MunI	CAATTG	2 cut(s)	369, 414
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	163
PaqCI	CACCTGC	1 cut(s)	307
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	79, 82, 349
PleI	GAGTC	2 cut(s)	214, 382
PpsI	GAGTC	2 cut(s)	214, 382
PscI	ACATGT	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	78, 81, 348
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	214, 383
SduI	GDGCHC	3 cut(s)	72, 102, 193
SetI	ASST	8 cut(s)	15, 155, 173, 275, 301, 352, 390, 413
SfaNI	GCATC	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	166, 356
SmoI	CTYRAG	2 cut(s)	166, 356
Sse9I	AATT	2 cut(s)	369, 414
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	197
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	369, 414
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	12, 141
TseI	GCWGC	3 cut(s)	77, 80, 347
TspRI	CASTG	2 cut(s)	12, 141
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.