Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011628

Physical Location & Seq

Genomic Coordinates Forward (+)

41005668 .. 41019116

Gene Structure 13449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG351200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACGGCGGGAACATTCCGGGCCCAACTTCCCAAACCCTAGTGCTCCCAATTCTTCCACCATGCCATGGACGGCGTAGCTGGGCCTGGGCTACTTCGATTTGGCGTCGGCAACACAGTCAAGATGAAACCGCTCATATTCTGGTTGAGTTATTGGAGGTGGCAATCACATCAATCGTTTTCATCAAAGGAATTTATCCTGCAGGTGTCGGTGGCAAAATGGGACAAGAGACAGCTACACTTGAGGATTCTCCAGTTGAGTCCTTGCTGGAGAAACCAACTAAATTGAATTATATAAAGAGGCTATTTAGAATGAGTCACCTATATGAGGATGAAGAGGATCGCGAAGAAAACGGGTATGACGATAGTGAGACACAAGATGTTGGCGGTGATTTTAATATTCAACAAGACGACGACAGCGAGACACAACATGTTGGTGGCATGTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

150

Amino Acids

16.84

Weight (kDa)

4.62

Isoelectric Point (pI)

67.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011628)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030373
rosa_multiflora	Rmu_sc0003880.1_g000025 Rmu_sc0006948.1_g000011 Rmu_sc0032105.1_g000001
rosa_rugosa	Rorug01G0189900 Rorug01G0190000 Rorug01G0190100 Rorug06G0061300 Rorug06G0061400
rosa_samantha	Rh1AG125400 Rh3BG351200 Rh3CG055900 Rh5AG334200 Rh5BG132800 Rh5DG508200 Rh6AG163600 Rh6BG167400 Rh6CG161200 Rh6DG152800 Rh6DG154100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	134
AccII	CGCG	1 cut(s)	345
AciI	CCGC	3 cut(s)	9, 132, 387
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	68, 328
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	289, 404
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	81, 236
AluI	AGCT	2 cut(s)	81, 236
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	3 cut(s)	224, 365, 416
AlwI	GGATC	1 cut(s)	348
AoxI	GGCC	2 cut(s)	22, 84
ApaI	GGGCCC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	22, 23, 84
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	311, 401
BaeGI	GKGCMC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	48
BceAI	ACGGC	2 cut(s)	22, 89
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	224, 365, 416
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	21, 88
BmgT120I	GGNCC	3 cut(s)	22, 23, 84
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	21, 88
BpmI	CTGGAG	2 cut(s)	237, 290
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	67, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 328
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	67, 87
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	68, 328
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	24, 86
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	68, 328
BsmAI	GTCTC	3 cut(s)	224, 365, 416
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	24, 86
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	26, 48
Bsp143I	GATC	1 cut(s)	340
Bsp19I	CCATGG	1 cut(s)	67
Bsp68I	TCGCGA	1 cut(s)	345
BspACI	CCGC	3 cut(s)	9, 132, 387
BspANI	GGCC	2 cut(s)	24, 86
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	348
BsrBI	CCGCTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	67, 87
BssMI	GATC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	67
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	3 cut(s)	224, 365, 416
BstMBI	GATC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	2 cut(s)	434, 445
BstSCI	CCNGG	2 cut(s)	19, 86
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	24, 86
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	337
BtuMI	TCGCGA	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	22, 23, 84
CseI	GACGC	1 cut(s)	95
CviAII	CATG	4 cut(s)	63, 68, 431, 442
CviJI	RGCY	6 cut(s)	24, 81, 86, 92, 236, 304
CviKI_1	RGCY	6 cut(s)	24, 81, 86, 92, 236, 304
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	4 cut(s)	66, 71, 434, 445
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	4 cut(s)	62, 67, 430, 441
FauI	CCCGC	1 cut(s)	2
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	85
GsuI	CTGGAG	2 cut(s)	237, 290
HaeIII	GGCC	2 cut(s)	24, 86
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	4 cut(s)	66, 71, 434, 445
HinfI	GANTC	3 cut(s)	248, 260, 316
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	311, 401
Hpy188III	TCNNGA	2 cut(s)	122, 344
Hpy99I	CGWCG	2 cut(s)	111, 416
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	203
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	4 cut(s)	66, 71, 434, 445
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	9 cut(s)	33, 67, 73, 100, 128, 189, 213, 254, 267
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	342
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	47, 347, 359
MhlI	GDGCHC	2 cut(s)	26, 48
MluCI	AATT	4 cut(s)	51, 192, 284, 289
MlyI	GAGTC	2 cut(s)	269, 325
MnlI	CCTC	5 cut(s)	151, 238, 294, 322, 331
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	324, 435
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	21, 88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	345
NciI	CCSGG	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	66, 71, 434, 445
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	317
NruI	TCGCGA	1 cut(s)	345
NspI	RCATGY	2 cut(s)	434, 445
PaqCI	CACCTGC	1 cut(s)	194
PciI	ACATGT	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 417
PfeI	GAWTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	68
PleI	GAGTC	2 cut(s)	268, 324
PpsI	GAGTC	2 cut(s)	268, 324
PscI	ACATGT	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	24
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	3 cut(s)	22, 23, 84
PstI	CTGCAG	1 cut(s)	205
RruI	TCGCGA	1 cut(s)	345
RseI	CAYNNNNRTG	2 cut(s)	324, 435
SaqAI	TTAA	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	3 cut(s)	22, 23, 84
SbfI	CCTGCAGG	1 cut(s)	205
SchI	GAGTC	2 cut(s)	269, 325
ScrFI	CCNGG	2 cut(s)	21, 88
SdaI	CCTGCAGG	1 cut(s)	205
SduI	GDGCHC	2 cut(s)	26, 48
SetI	ASST	5 cut(s)	83, 162, 208, 238, 324
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	2 cut(s)	324, 435
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse8387I	CCTGCAGG	1 cut(s)	205
Sse9I	AATT	4 cut(s)	51, 192, 284, 289
SsiI	CCGC	3 cut(s)	9, 132, 387
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	19, 86
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	98
TasI	AATT	4 cut(s)	51, 192, 284, 289
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	141, 172, 348, 437
Van91I	CCANNNNNTGG	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	2 cut(s)	434, 445
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.