Rh5DG508200

39S ribosomal protein L45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011628
Physical Location & Seq
Reverse (-)
79359899 .. 79362781
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG508200.1

Sequence Viewer

Length: 333 bp
ATGAACGACAAGGCGTCGCCGATGAAGGACGGCGGGAATGAGGCCTACTCTGGCTTGGCTGAACTTAATAGATGGAACATGTACTCAAGCTTAAATAAGAGCCATGGAGCACTTCCTTGGACTTCTAGAAATGATATGACTCTGCGTTCTGCAATGGCTGTCGAGTTGTCAATCTTCTTGAATGATAAAAGGTTGCTATCCACACAAGTAAAAGCACCTGCCCAAGCAAGGCAAATGGCTTTAATGGATGAAGCAAGGTTTTGGGGAGCTTTTGGATTATACGCTACAATAAATGTGGTTATTTCGTTCCTGACATTGTGGTGGCTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim44

Protein Analysis

110

Amino Acids

12.43

Weight (kDa)

9.15

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 226
AciI CCGC 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 228
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 181
AhdI GACNNNNNGTC 1 cut(s) 13
AluBI AGCT 2 cut(s) 90, 269
AluI AGCT 2 cut(s) 90, 269
Alw21I GWGCWC 1 cut(s) 112
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 312
BccI CCATC 1 cut(s) 66
BceAI ACGGC 1 cut(s) 46
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
BmeRI GACNNNNNGTC 1 cut(s) 13
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 103, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 103, 116
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 312
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 228
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 112
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 44
BspMAI CTGCAG 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 103, 116
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 103, 116
BstACI GRCGYC 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 226
CseI GACGC 1 cut(s) 3
Csp6I GTAC 1 cut(s) 82
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 2 cut(s) 79, 104
CviJI RGCY 9 cut(s) 44, 54, 59, 90, 102, 158, 239, 269, 325
CviKI_1 RGCY 9 cut(s) 44, 54, 59, 90, 102, 158, 239, 269, 325
CviQI GTAC 1 cut(s) 82
DriI GACNNNNNGTC 1 cut(s) 13
Eam1105I GACNNNNNGTC 1 cut(s) 13
Eco130I CCWWGG 2 cut(s) 103, 116
Eco147I AGGCCT 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 103, 116
ErhI CCWWGG 2 cut(s) 103, 116
FaeI CATG 2 cut(s) 82, 107
FaiI YATR 4 cut(s) 80, 105, 137, 280
FatI CATG 2 cut(s) 78, 103
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 326
HaeIII GGCC 1 cut(s) 44
HgaI GACGC 1 cut(s) 3
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 2 cut(s) 82, 107
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 126, 178, 310
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 152, 328
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 82, 107
LmnI GCTCC 2 cut(s) 107, 266
LpnPI CCDG 3 cut(s) 36, 231, 323
Lsp1109I GCAGC 1 cut(s) 312
MaeI CTAG 1 cut(s) 126
MboII GAAGA 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 112
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 1 cut(s) 34
MseI TTAA 3 cut(s) 66, 92, 242
MslI CAYNNNNRTG 1 cut(s) 319
NcoI CCATGG 1 cut(s) 103
NlaIII CATG 2 cut(s) 82, 107
NspI RCATGY 1 cut(s) 82
PaqCI CACCTGC 1 cut(s) 226
PceI AGGCCT 1 cut(s) 44
PciI ACATGT 1 cut(s) 78
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PscI ACATGT 1 cut(s) 78
PstI CTGCAG 1 cut(s) 330
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 319
SaqAI TTAA 3 cut(s) 66, 92, 242
SatI GCNGC 1 cut(s) 326
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 112
SetI ASST 5 cut(s) 92, 194, 220, 260, 271
SfcI CTRYAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 126
StuI AGGCCT 1 cut(s) 44
StyI CCWWGG 2 cut(s) 103, 116
TaqI TCGA 1 cut(s) 162
TatI WGTACW 1 cut(s) 81
Tru1I TTAA 3 cut(s) 66, 92, 242
Tru9I TTAA 3 cut(s) 66, 92, 242
TseI GCWGC 1 cut(s) 325
TspDTI ATGAA 3 cut(s) 17, 38, 264
XbaI TCTAGA 1 cut(s) 125
XceI RCATGY 1 cut(s) 82
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.