Rh1AG125400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011628
Physical Location & Seq
Forward (+)
23299358 .. 23319363
20006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG125400.1

Sequence Viewer

Length: 363 bp
ATGGACGGCGTAAACATTTCGGGCCCAACTTCCCAAACCCTAGCGCTCCCAATTCTTCCACCATGCCATGGACGACGTAGCTGGGCCTGGGCTACTTCAATTTGGCGTCGGCAACACAGTCAAGTCAACCCATGGAAGCTTTCTCACAATAAAGCTTTGAAGTTCAACTGGGACAAGCCACCATCACCCTGCCACAGATGGACAGACCCTTCATTATTGGGGAAAGGGTTCTTAATTTCTATAGGGTCAAACTCCCAACTCCCAAATCCAATCATCATGTCACAATGGATGGACTCGTATACTCCTTTTACGAGAATACAAGCAGATGACTTTCAAGATAAGGCATTAATTTTAACAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.66

Weight (kDa)

9.69

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AccI GTMKAC 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 106
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 4 cut(s) 99, 160, 166, 335
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 3 cut(s) 81, 139, 155
AluI AGCT 3 cut(s) 81, 139, 155
Aor51HI AGCGCT 1 cut(s) 45
AoxI GGCC 2 cut(s) 22, 84
ApaI GGGCCC 1 cut(s) 26
AseI ATTAAT 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 3 cut(s) 22, 23, 84
AsuHPI GGTGA 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 26
BccI CCATC 3 cut(s) 190, 192, 283
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 88
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 88
BmgT120I GGNCC 3 cut(s) 22, 23, 84
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 88
BmrI ACTGGG 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 3 cut(s) 67, 87, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 3 cut(s) 67, 87, 131
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 26
BseYI CCCAGC 1 cut(s) 81
BshFI GGCC 2 cut(s) 24, 86
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 2 cut(s) 24, 86
Bsp120I GGGCCC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 26
Bsp19I CCATGG 2 cut(s) 67, 131
BspANI GGCC 2 cut(s) 24, 86
BspLI GGNNCC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 3 cut(s) 67, 87, 131
BssNAI GTATAC 1 cut(s) 300
BssNI GRCGYC 1 cut(s) 106
BssT1I CCWWGG 2 cut(s) 67, 131
Bst1107I GTATAC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 106
BstDSI CCRYGG 2 cut(s) 67, 131
BstF5I GGATG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 26
BstZ17I GTATAC 1 cut(s) 300
BsuRI GGCC 2 cut(s) 24, 86
BtgI CCRYGG 2 cut(s) 67, 131
BtsCI GGATG 1 cut(s) 294
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 3 cut(s) 22, 23, 84
CseI GACGC 1 cut(s) 95
CviAII CATG 4 cut(s) 63, 68, 132, 277
CviJI RGCY 7 cut(s) 24, 81, 86, 92, 139, 155, 178
CviKI_1 RGCY 7 cut(s) 24, 81, 86, 92, 139, 155, 178
Eco130I CCWWGG 2 cut(s) 67, 131
Eco24I GRGCYC 1 cut(s) 26
Eco47III AGCGCT 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 67, 131
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 2 cut(s) 67, 131
FaeI CATG 4 cut(s) 66, 71, 135, 280
FaiI YATR 6 cut(s) 64, 69, 133, 242, 278, 300
FaqI GGGAC 1 cut(s) 185
FatI CATG 4 cut(s) 62, 67, 131, 276
FblI GTMKAC 1 cut(s) 299
FokI GGATG 1 cut(s) 301
FriOI GRGCYC 1 cut(s) 26
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 2 cut(s) 24, 86
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 4 cut(s) 66, 71, 135, 280
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 2 cut(s) 137, 153
HinfI GANTC 1 cut(s) 293
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 3 cut(s) 13, 127, 300
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 3 cut(s) 13, 127, 300
Hpy99I CGWCG 2 cut(s) 78, 111
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 76
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 4 cut(s) 66, 71, 135, 280
HspAI GCGC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 5 cut(s) 67, 73, 100, 154, 202
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 279
MboII GAAGA 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 4 cut(s) 51, 99, 234, 348
MlyI GAGTC 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 3 cut(s) 233, 347, 353
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
NcoI CCATGG 2 cut(s) 67, 131
NlaIII CATG 4 cut(s) 66, 71, 135, 280
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 68
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PshBI ATTAAT 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 24
PspOMI GGGCCC 1 cut(s) 22
PspPI GGNCC 3 cut(s) 22, 23, 84
SaqAI TTAA 3 cut(s) 233, 347, 353
Sau96I GGNCC 3 cut(s) 22, 23, 84
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 26
SetI ASST 4 cut(s) 79, 83, 141, 157
SfcI CTRYAG 1 cut(s) 240
Sse9I AATT 4 cut(s) 51, 99, 234, 348
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 2 cut(s) 67, 131
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 79
TasI AATT 4 cut(s) 51, 99, 234, 348
Tru1I TTAA 3 cut(s) 233, 347, 353
Tru9I TTAA 3 cut(s) 233, 347, 353
TseFI GTSAC 1 cut(s) 279
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 68
VspI ATTAAT 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.