Rh3CG055900

39S ribosomal protein L45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0011628
Physical Location & Seq
Reverse (-)
3880691 .. 3884588
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG055900.1

Sequence Viewer

Length: 360 bp
ATGATGGCTTTCAGAAGCTCAAACACGATTCGTGTTCTCTTGCGTGCGACCCAGATTCAAGAATCTTCGTATCTTCTTGGATGCTCAAGAAGCTACGGAACTGGTATTTCAAATGTGGCCGAACTTAATAGCCGGAACACGTACTCAAGCTTATATAAGGGCAATGGAGCACTTCCTTGGACTTGTAGAAATGCTATGACGCTGCGTTCTGCAATGAAGTTTGAAGCATATGACTCAAAGGGTTCTGTTGTTGCTGGAGATAAATCTAAGGAGGTTCTTGTCCGTGATATCTGGGTATTTGAAAAGTCTCTCTTCCATCCTAAATCTTTCTGGCGTCTTTGTGGGAGGATTACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim44

Protein Analysis

119

Amino Acids

13.43

Weight (kDa)

9.89

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim44 PF04280 72 - 115 1e-07 Tim44-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 334
AfaI GTAC 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 4 cut(s) 59, 111, 224, 302
AluBI AGCT 3 cut(s) 18, 93, 150
AluI AGCT 3 cut(s) 18, 93, 150
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 312
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 312
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmsI GCATC 1 cut(s) 71
BplI GAGNNNNNCTC 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 70, 130
BsaAI YACGTR 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 2 cut(s) 169, 219
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 2 cut(s) 86, 316
BseMI GCAATG 2 cut(s) 169, 219
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 312
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 172
BspANI GGCC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 169, 219
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 86, 316
BstMAI GTCTC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 2 cut(s) 86, 316
Cac8I GCNNGC 1 cut(s) 45
CseI GACGC 2 cut(s) 208, 323
Csp6I GTAC 1 cut(s) 142
CviJI RGCY 6 cut(s) 8, 18, 93, 119, 132, 150
CviKI_1 RGCY 6 cut(s) 8, 18, 93, 119, 132, 150
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 176
Eco32I GATATC 1 cut(s) 289
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaiI YATR 5 cut(s) 154, 156, 197, 229, 231
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FauNDI CATATG 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 2 cut(s) 93, 303
Fsp4HI GCNGC 1 cut(s) 203
GluI GCNGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 133
HgaI GACGC 2 cut(s) 208, 323
Hin1I GRCGYC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 4 cut(s) 28, 55, 62, 233
HpaII CCGG 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 2 cut(s) 59, 87
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 6 cut(s) 65, 87, 146, 240, 277, 316
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 71
MaeII ACGT 1 cut(s) 140
MboII GAAGA 3 cut(s) 57, 65, 304
MhlI GDGCHC 1 cut(s) 172
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 2 cut(s) 265, 339
MseI TTAA 1 cut(s) 126
MspI CCGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeI CATATG 1 cut(s) 229
PfeI GAWTC 3 cut(s) 28, 55, 62
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Ppu21I YACGTR 1 cut(s) 141
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 203
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 1 cut(s) 172
SetI ASST 5 cut(s) 20, 95, 143, 152, 276
SfaNI GCATC 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 85, 145
SmoI CTYRAG 2 cut(s) 85, 145
StyI CCWWGG 1 cut(s) 176
TaiI ACGT 1 cut(s) 143
TfiI GAWTC 3 cut(s) 28, 55, 62
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 2 cut(s) 111, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.