Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8055024.1

Orthogroup ID

OG0004425

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 564

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8055024.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 557 bp

gaaacacctcatgaggtatggttccatgaggaatataaagatcggttgaaatcggccatcacagccttcaagacacctccagcatctgctacagcacttggagatgcatggcgtccatttgatattattgctgcctccttggcatcttatcaaaggaagtcatcaatttgtttaagagaagtcgcaccacaattggctctactatcatcgtctgatgttccaatgcctggtcttgaaaagcaagatacagtgtctgaatctgacagaggtctcagtgctaatcttcaaggaattgttaccattgcttctttctctgaggacgtggctatcatatcaacaaagactaagcctaagaaacttgttattcttggttctgatggtcaaaagtacacatatcttttgaaaggaagggaagatctccggcttgatgccagaatcatgcagctcttgcaagctatcaacggttttctgcattcctcagtcgcaactcatagtcactttcttggtattcgctattattctgtgactccaattagtggccgggctggtcttatcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

185

Amino Acids

20.29

Weight (kDa)

8.68

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35075
fragaria_vesca	FvH4_2g07370 FvH4_2g07370
malus_domestica	MD10G1086500.v1.1 MD14G1180200.v1.1
prunus_persica	Prupe.8G112500_v2.0.a1
pyrus_communis	pycom10g06870
rosa_chinensis	RchiOBHm_Chr6g0260251 RchiOBHm_Chr6g0260261 RchiOBHm_Chr6g0260791
rosa_laevigata	RLG00000014485
rosa_multiflora	Rmu_co8055024.1_g000001 Rmu_co8166074.1_g000001 Rmu_sc0014629.1_g000010 Rmu_sc0023276.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207390
rosa_rugosa	Rorug05G0592900
rosa_samantha	Rh6AG109300 Rh6AG110500 Rh6AG112300 Rh6BG106200 Rh6CG097700 Rh6CG098100 Rh6CG102000 Rh6CG102200 Rh6CG103000 Rh6DG091700 Rh6DG093600 Rh6DG093900 Rh6DG094300
rosa_wichuraiana	Rw6G009500 Rw6G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	227, 536
AcoI	YGGCCR	2 cut(s)	54, 538
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	227, 536
AgsI	TTSAA	5 cut(s)	49, 70, 236, 287, 403
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	445, 455
AluI	AGCT	2 cut(s)	445, 455
Alw26I	GTCTC	1 cut(s)	275
AlwNI	CAGNNNCTG	2 cut(s)	86, 254
AoxI	GGCC	2 cut(s)	54, 538
ApeKI	GCWGC	2 cut(s)	131, 442
AsuC2I	CCSGG	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	118, 454
BccI	CCATC	2 cut(s)	65, 371
BciT130I	CCWGG	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	90
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	2 cut(s)	132, 443
BlsI	GCNGC	2 cut(s)	133, 444
Bme1390I	CCNGG	2 cut(s)	228, 542
BmgBI	CACGTC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	228, 542
BmsI	GCATC	4 cut(s)	92, 94, 152, 418
BoxI	GACNNNNGTC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 536
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	227, 536
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	286, 306, 492
BseXI	GCAGC	2 cut(s)	118, 454
BshFI	GGCC	2 cut(s)	56, 540
BsiSI	CCGG	2 cut(s)	421, 541
BslI	CCNNNNNNNGG	2 cut(s)	227, 536
BsmAI	GTCTC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	56, 540
Bso31I	GGTCTC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	40, 415
BspANI	GGCC	2 cut(s)	56, 540
BspCNI	CTCAG	3 cut(s)	285, 307, 491
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	40, 415
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	250, 464
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	5 cut(s)	272, 315, 345, 351, 478
BstKTI	GATC	2 cut(s)	43, 418
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	40, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 140, 448
BstNI	CCWGG	1 cut(s)	228
BstPAI	GACNNNNGTC	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	226, 540
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	118, 454
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	56, 540
BtrI	CACGTC	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	255, 280
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	2 cut(s)	86, 254
CciI	TCATGA	1 cut(s)	10
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	11, 26, 108, 439
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	5 cut(s)	272, 315, 345, 351, 478
DpnI	GATC	2 cut(s)	42, 417
DpnII	GATC	2 cut(s)	40, 415
EaeI	YGGCCR	2 cut(s)	54, 538
Eco130I	CCWWGG	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	4 cut(s)	14, 29, 111, 442
FaiI	YATR	9 cut(s)	12, 19, 27, 36, 109, 332, 394, 440, 492
FatI	CATG	4 cut(s)	10, 25, 107, 438
Fnu4HI	GCNGC	2 cut(s)	132, 443
Fsp4HI	GCNGC	2 cut(s)	132, 443
GluI	GCNGC	2 cut(s)	132, 443
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	56, 540
HapII	CCGG	2 cut(s)	421, 541
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	14, 29, 111, 442
HinfI	GANTC	3 cut(s)	257, 435, 526
HpaII	CCGG	2 cut(s)	421, 541
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	5 cut(s)	214, 256, 262, 316, 376
Hpy188III	TCNNGA	3 cut(s)	11, 70, 233
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	2 cut(s)	76, 402
HpyCH4III	ACNGT	2 cut(s)	250, 464
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	107, 442, 451, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 140, 448
HpyF3I	CTNAG	5 cut(s)	272, 315, 345, 351, 478
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	14, 29, 111, 442
Kzo9I	GATC	2 cut(s)	40, 415
LpnPI	CCDG	6 cut(s)	93, 213, 240, 434, 445, 531
Lsp1109I	GCAGC	2 cut(s)	118, 454
LweI	GCATC	4 cut(s)	92, 94, 152, 418
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	295, 494, 523
MalI	GATC	2 cut(s)	42, 417
MboI	GATC	2 cut(s)	40, 415
MboII	GAAGA	2 cut(s)	275, 425
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	4 cut(s)	165, 191, 291, 531
MlyI	GAGTC	1 cut(s)	520
MnlI	CCTC	8 cut(s)	7, 18, 22, 87, 145, 260, 310, 487
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	1 cut(s)	173
MspI	CCGG	2 cut(s)	421, 541
MspR9I	CCNGG	2 cut(s)	228, 542
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	62, 140, 448
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	2 cut(s)	40, 415
NlaIII	CATG	4 cut(s)	14, 29, 111, 442
NlaIV	GGNNCC	1 cut(s)	23
NmuCI	GTSAC	2 cut(s)	494, 523
NsiI	ATGCAT	1 cut(s)	109
PagI	TCATGA	1 cut(s)	10
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	257, 435
PflMI	CCANNNNNTGG	2 cut(s)	227, 536
PkrI	GCNGC	2 cut(s)	133, 444
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PshAI	GACNNNNGTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	23
PstNI	CAGNNNCTG	2 cut(s)	86, 254
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	132, 443
Sau3AI	GATC	2 cut(s)	40, 415
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	228, 542
SetI	ASST	7 cut(s)	10, 18, 79, 271, 324, 447, 457
SfaNI	GCATC	4 cut(s)	92, 94, 152, 418
SfcI	CTRYAG	1 cut(s)	90
Sse9I	AATT	4 cut(s)	165, 191, 291, 531
StyD4I	CCNGG	2 cut(s)	226, 540
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	250, 464
TaiI	ACGT	1 cut(s)	324
TasI	AATT	4 cut(s)	165, 191, 291, 531
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	257, 435
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	255, 280
TseFI	GTSAC	2 cut(s)	494, 523
TseI	GCWGC	2 cut(s)	131, 442
Tsp45I	GTSAC	2 cut(s)	494, 523
TspRI	CASTG	2 cut(s)	255, 280
Van91I	CCANNNNNTGG	2 cut(s)	227, 536
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.