Rh6AG110500

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004425
Physical Location & Seq
Forward (+)
16141738 .. 16153716
11979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG110500.1

Sequence Viewer

Length: 984 bp
ATGAAACTCTTAAACTGGCTTAAACAGAAGTATTCAGATTCGAGGCTAGATGGGGTTATTGTTAAGATGCGATCAGATTTTGATATGGCCAATTCTTCATTTCCGTGCAGAGGTGGACCCTCATTTGTCGATGAGATTTTAATCACTAAACCACCTCTGGGTCCTATTGTTGAGGAGTTTGTGCTCTTCCTGAATAAGGATGATGGGGGTTTCACTGCTGAACAGGGAGAGTTTAGCTTTTCTATTGATTCTGTTGCACCAAGAAATGACAATACTGTGATGGCATTGGTTCTGCAAGTAGTGAATATTATTGAAACTGTTTCTGGGGCACCTGGTGTTGAAGACTCAAGTGAAGATTGCTTTTCTGCTGCTCTAGCTTCTCAGTTTAAGATCTGCTTCCTTCATGCCAATATTGGTTTAACTGAAACCGACATAATTTCTGTTGTCAATGATTTAGTAGCTGTGTGGTGGTCTTTGAGGAGGAGAAGAGTGTCTCTCTTTGGCCATGCAGCTCATGATTTTATACAGTATCTTTCATATTCATCTGCCAAAATTTGCAATAGTGGTTTGGTTGACTCTGGTCCTGAACCTATGAAACAAAAAACTGGCAGTTGTACGTTTAGGGCCACATTGTATGTCCTCCATATTCTTCTCAGTTATGGAGTTGATTTGAAAGATATACTTGAACCTGCGCTTTCAACAGTTCCTTTGTCACCGTGGCAGGATGTGCAGCTCGTGATAAATGAGCTAGGAAATGTCACTGTTCTTTGTGAGGAGCTACGGCTCAGCATACTCCAAGCTCTTCACACAGATGTGACGAGGCGCATAAATGTACTGAAGGAGGAAGCTGCACGAATTGCAGAAAATATTACTCTTAGCCATAGTGAGAAGAACAAGATAAATGCTGCTAAATACTCTGCTATAATGGCTCCTATTGTTGTGGCCTTAGAACGTCGGTCTGTCTTCCACATCTCGGAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

327

Amino Acids

36.16

Weight (kDa)

5.33

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 328
AcoI YGGCCR 2 cut(s) 87, 502
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 1 cut(s) 857
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 616, 834
AfiI CCNNNNNNNGG 4 cut(s) 110, 158, 196, 973
AgsI TTSAA 5 cut(s) 314, 341, 673, 686, 699
AjnI CCWGG 1 cut(s) 331
AleI CACNNNNGTG 1 cut(s) 812
AluBI AGCT 9 cut(s) 237, 377, 461, 512, 733, 748, 778, 800, 848
AluI AGCT 9 cut(s) 237, 377, 461, 512, 733, 748, 778, 800, 848
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 498
AoxI GGCC 4 cut(s) 87, 502, 624, 942
ApeKI GCWGC 5 cut(s) 368, 509, 730, 848, 905
ApoI RAATTY 1 cut(s) 552
AspLEI GCGC 2 cut(s) 694, 825
AspS9I GGNCC 4 cut(s) 116, 161, 581, 624
AsuHPI GGTGA 1 cut(s) 705
AvaII GGWCC 3 cut(s) 116, 161, 581
BaeGI GKGCMC 1 cut(s) 331
BalI TGGCCA 2 cut(s) 89, 504
BanI GGYRCC 1 cut(s) 328
BauI CACGAG 1 cut(s) 734
BbsI GAAGAC 2 cut(s) 348, 955
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 5 cut(s) 355, 521, 742, 835, 892
BccI CCATC 3 cut(s) 44, 197, 274
BceAI ACGGC 1 cut(s) 797
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 3 cut(s) 47, 374, 749
BfuAI ACCTGC 1 cut(s) 697
BglII AGATCT 1 cut(s) 390
BisI GCNGC 5 cut(s) 369, 510, 731, 849, 906
BlpI GCTNAGC 1 cut(s) 785
BlsI GCNGC 5 cut(s) 370, 511, 732, 850, 907
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 3 cut(s) 116, 161, 581
BmgT120I GGNCC 4 cut(s) 116, 161, 581, 624
BmiI GGNNCC 4 cut(s) 118, 162, 330, 930
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 57
BoxI GACNNNNGTC 1 cut(s) 579
BpiI GAAGAC 2 cut(s) 348, 955
BplI GAGNNNNNCTC 2 cut(s) 480, 512
Bpu1102I GCTNAGC 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 716
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 158, 196, 973
Bse1I ACTGG 2 cut(s) 20, 610
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 2 cut(s) 205, 730
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 4 cut(s) 110, 158, 196, 973
BseMII CTCAG 3 cut(s) 395, 667, 799
BseNI ACTGG 2 cut(s) 20, 610
BseRI GAGGAG 4 cut(s) 188, 493, 496, 788
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 5 cut(s) 355, 521, 742, 835, 892
BsgI GTGCAG 3 cut(s) 127, 749, 834
BshFI GGCC 4 cut(s) 89, 504, 626, 944
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 186
BslI CCNNNNNNNGG 4 cut(s) 110, 158, 196, 973
BsmAI GTCTC 1 cut(s) 498
BsnI GGCC 4 cut(s) 89, 504, 626, 944
Bsp1286I GDGCHC 2 cut(s) 186, 331
Bsp143I GATC 2 cut(s) 71, 390
Bsp1720I GCTNAGC 1 cut(s) 785
BspANI GGCC 4 cut(s) 89, 504, 626, 944
BspCNI CTCAG 3 cut(s) 394, 666, 798
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 4 cut(s) 118, 162, 330, 930
BspMI ACCTGC 1 cut(s) 697
BspQI GCTCTTC 2 cut(s) 191, 807
BspT107I GGYRCC 1 cut(s) 328
BsrI ACTGG 2 cut(s) 20, 610
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 2 cut(s) 71, 390
BssSI CACGAG 1 cut(s) 734
Bst2BI CACGAG 1 cut(s) 734
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 6 cut(s) 277, 319, 528, 703, 717, 763
Bst6I CTCTTC 3 cut(s) 191, 481, 807
BstAPI GCANNNNNTGC 2 cut(s) 727, 857
BstDEI CTNAG 5 cut(s) 381, 653, 785, 875, 946
BstDSI CCRYGG 1 cut(s) 716
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 205, 730
BstHHI GCGC 2 cut(s) 694, 825
BstKTI GATC 2 cut(s) 74, 393
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 2 cut(s) 71, 390
BstMWI GCNNNNNNNGC 4 cut(s) 374, 727, 857, 926
BstNI CCWGG 1 cut(s) 333
BstPAI GACNNNNGTC 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 5 cut(s) 355, 521, 742, 835, 892
BstV2I GAAGAC 2 cut(s) 348, 955
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BsuRI GGCC 4 cut(s) 89, 504, 626, 944
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 2 cut(s) 205, 730
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 759
BveI ACCTGC 1 cut(s) 697
CciI TCATGA 1 cut(s) 514
CfoI GCGC 2 cut(s) 694, 825
Cfr13I GGNCC 4 cut(s) 116, 161, 581, 624
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 615, 833
CviAII CATG 3 cut(s) 404, 506, 515
CviQI GTAC 2 cut(s) 615, 833
DdeI CTNAG 5 cut(s) 381, 653, 785, 875, 946
DpnI GATC 2 cut(s) 73, 392
DpnII GATC 2 cut(s) 71, 390
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 2 cut(s) 87, 502
Eam1104I CTCTTC 3 cut(s) 191, 481, 807
EarI CTCTTC 3 cut(s) 191, 481, 807
Eco47I GGWCC 3 cut(s) 116, 161, 581
Eco57I CTGAAG 1 cut(s) 857
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 331
FaeI CATG 3 cut(s) 407, 509, 518
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 666, 698
FatI CATG 3 cut(s) 403, 505, 514
Fnu4HI GCNGC 5 cut(s) 369, 510, 731, 849, 906
FokI GGATG 2 cut(s) 212, 737
Fsp4HI GCNGC 5 cut(s) 369, 510, 731, 849, 906
FspBI CTAG 3 cut(s) 47, 374, 749
GlaI GCGC 2 cut(s) 693, 824
GluI GCNGC 5 cut(s) 369, 510, 731, 849, 906
HaeIII GGCC 4 cut(s) 89, 504, 626, 944
HhaI GCGC 2 cut(s) 694, 825
Hin1II CATG 3 cut(s) 407, 509, 518
Hin6I GCGC 2 cut(s) 692, 823
HinP1I GCGC 2 cut(s) 692, 823
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 4 cut(s) 38, 248, 344, 575
HphI GGTGA 1 cut(s) 705
Hpy166II GTNNAC 2 cut(s) 116, 574
Hpy188I TCNGA 3 cut(s) 37, 76, 976
Hpy188III TCNNGA 4 cut(s) 190, 515, 584, 736
Hpy8I GTNNAC 2 cut(s) 116, 574
Hpy99I CGWCG 1 cut(s) 957
HpyAV CCTTC 2 cut(s) 410, 832
HpyCH4III ACNGT 6 cut(s) 277, 319, 528, 703, 717, 763
HpyCH4IV ACGT 2 cut(s) 617, 952
HpyCH4V TGCA 8 cut(s) 108, 257, 295, 509, 558, 730, 851, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 727, 857, 926
HpyF3I CTNAG 5 cut(s) 381, 653, 785, 875, 946
HpySE526I ACGT 2 cut(s) 617, 952
Hsp92II CATG 3 cut(s) 407, 509, 518
HspAI GCGC 2 cut(s) 692, 823
Kzo9I GATC 2 cut(s) 71, 390
LguI GCTCTTC 2 cut(s) 191, 807
LmnI GCTCC 2 cut(s) 775, 934
Lsp1109I GCAGC 5 cut(s) 355, 521, 742, 835, 892
LweI GCATC 1 cut(s) 57
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 3 cut(s) 47, 374, 749
MaeII ACGT 2 cut(s) 617, 952
MaeIII GTNAC 3 cut(s) 711, 757, 814
MalI GATC 2 cut(s) 73, 392
MboI GATC 2 cut(s) 71, 390
MboII GAAGA 9 cut(s) 87, 178, 353, 365, 498, 641, 794, 901, 955
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 2 cut(s) 186, 331
MlsI TGGCCA 2 cut(s) 89, 504
MluCI AATT 4 cut(s) 91, 435, 552, 855
MluNI TGGCCA 2 cut(s) 89, 504
MlyI GAGTC 2 cut(s) 338, 569
Mox20I TGGCCA 2 cut(s) 89, 504
MscI TGGCCA 2 cut(s) 89, 504
MseI TTAA 6 cut(s) 11, 21, 63, 140, 387, 419
MslI CAYNNNNRTG 3 cut(s) 103, 810, 812
Msp20I TGGCCA 2 cut(s) 89, 504
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 4 cut(s) 374, 727, 857, 926
NdeII GATC 2 cut(s) 71, 390
NlaIII CATG 3 cut(s) 407, 509, 518
NlaIV GGNNCC 4 cut(s) 118, 162, 330, 930
NmuCI GTSAC 3 cut(s) 711, 757, 814
OliI CACNNNNGTG 1 cut(s) 812
PagI TCATGA 1 cut(s) 514
PciSI GCTCTTC 2 cut(s) 191, 807
PfeI GAWTC 2 cut(s) 38, 248
PkrI GCNGC 5 cut(s) 370, 511, 732, 850, 907
PleI GAGTC 2 cut(s) 338, 569
PpsI GAGTC 2 cut(s) 338, 569
PpuMI RGGWCCY 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 579
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 4 cut(s) 118, 162, 330, 930
PspPI GGNCC 4 cut(s) 116, 161, 581, 624
PspPPI RGGWCCY 1 cut(s) 161
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 2 cut(s) 616, 834
RsaNI GTAC 2 cut(s) 615, 833
RseI CAYNNNNRTG 3 cut(s) 103, 810, 812
SapI GCTCTTC 2 cut(s) 191, 807
SaqAI TTAA 6 cut(s) 11, 21, 63, 140, 387, 419
SatI GCNGC 5 cut(s) 369, 510, 731, 849, 906
Sau3AI GATC 2 cut(s) 71, 390
Sau96I GGNCC 4 cut(s) 116, 161, 581, 624
SchI GAGTC 2 cut(s) 338, 569
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 2 cut(s) 186, 331
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 1 cut(s) 57
SinI GGWCC 3 cut(s) 116, 161, 581
SmiMI CAYNNNNRTG 3 cut(s) 103, 810, 812
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 4 cut(s) 91, 435, 552, 855
SspI AATATT 3 cut(s) 307, 412, 868
SspMI CTAG 3 cut(s) 47, 374, 749
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 6 cut(s) 277, 319, 528, 703, 717, 763
TaiI ACGT 2 cut(s) 620, 955
TaqI TCGA 2 cut(s) 41, 129
TaqII GACCGA 1 cut(s) 945
TasI AATT 4 cut(s) 91, 435, 552, 855
TatI WGTACW 1 cut(s) 832
TfiI GAWTC 2 cut(s) 38, 248
Tru1I TTAA 6 cut(s) 11, 21, 63, 140, 387, 419
Tru9I TTAA 6 cut(s) 11, 21, 63, 140, 387, 419
TscAI CASTG 2 cut(s) 220, 766
TseFI GTSAC 3 cut(s) 711, 757, 814
TseI GCWGC 5 cut(s) 368, 509, 730, 848, 905
Tsp45I GTSAC 3 cut(s) 711, 757, 814
TspDTI ATGAA 6 cut(s) 17, 87, 392, 525, 531, 608
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 220, 766
VpaK11BI GGWCC 3 cut(s) 116, 161, 581
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 1 cut(s) 552
XspI CTAG 3 cut(s) 47, 374, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.