Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023276.1

Orthogroup ID

OG0004425

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1609

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023276.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ctggtgttgaagactcaagtgaagattgcctttctgctgctctagcttctcagttgaagatctgcttccttcatgccaatattggcttaaatgaaaacgacataatttctgttgtcaatgatttagtagctgtgtggtggtctttgaggaggaggagagtgtccctctttggccacgcagctcaaggatttatacagtatctttcatattcatctgccaaaatttgcaatagtggtttggttgactctggtcctgaacctatgaaacaaaaaactggcagctatactcttagggccacattgtatgtcctgcatattcttctcaattatggagctgagttgaaagatatacttgaacctgctctttcaacagttcctttgtcaccgtggcaggaggtcaccccccaattgtttgctcggttaagttctcatcctgagcaagtggtacggaagcagttggaggggttattgatgatgctggccaaacaatctccttggtccatcgtctacccgacattagttgatgtgaatgcttacgaagagaagccttcggaggagctccaacacatacttggttgtttgagtaaactatacccaagactgattcaggatgtccagctcgtgataaatgagctaggaaatgttactgttctttgggaggagctatggctcagcacactccaagatcttcacacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

231

Amino Acids

25.91

Weight (kDa)

5.22

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35075
fragaria_vesca	FvH4_2g07370 FvH4_2g07370
malus_domestica	MD10G1086500.v1.1 MD14G1180200.v1.1
prunus_persica	Prupe.8G112500_v2.0.a1
pyrus_communis	pycom10g06870
rosa_chinensis	RchiOBHm_Chr6g0260251 RchiOBHm_Chr6g0260261 RchiOBHm_Chr6g0260791
rosa_laevigata	RLG00000014485
rosa_multiflora	Rmu_co8055024.1_g000001 Rmu_co8166074.1_g000001 Rmu_sc0014629.1_g000010 Rmu_sc0023276.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207390
rosa_rugosa	Rorug05G0592900
rosa_samantha	Rh6AG109300 Rh6AG110500 Rh6AG112300 Rh6BG106200 Rh6CG097700 Rh6CG098100 Rh6CG102000 Rh6CG102200 Rh6CG103000 Rh6DG091700 Rh6DG093600 Rh6DG093900 Rh6DG094300
rosa_wichuraiana	Rw6G009500 Rw6G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	506
AcoI	YGGCCR	2 cut(s)	171, 479
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	1 cut(s)	446
AgsI	TTSAA	5 cut(s)	10, 57, 342, 355, 368
AluBI	AGCT	9 cut(s)	46, 130, 181, 281, 334, 558, 618, 633, 663
AluI	AGCT	9 cut(s)	46, 130, 181, 281, 334, 558, 618, 633, 663
Alw21I	GWGCWC	1 cut(s)	560
AoxI	GGCC	3 cut(s)	171, 293, 479
ApeKI	GCWGC	3 cut(s)	37, 178, 278
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	250, 293, 497
AsuHPI	GGTGA	2 cut(s)	374, 390
AvaII	GGWCC	2 cut(s)	250, 497
BalI	TGGCCA	2 cut(s)	173, 481
BanII	GRGCYC	1 cut(s)	560
BauI	CACGAG	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	3 cut(s)	24, 190, 290
BccI	CCATC	1 cut(s)	508
BfaI	CTAG	2 cut(s)	43, 634
BfuAI	ACCTGC	1 cut(s)	366
BglII	AGATCT	2 cut(s)	59, 684
BisI	GCNGC	3 cut(s)	38, 179, 279
BlpI	GCTNAGC	1 cut(s)	670
BlsI	GCNGC	3 cut(s)	39, 180, 280
Bme18I	GGWCC	2 cut(s)	250, 497
BmgT120I	GGNCC	3 cut(s)	250, 293, 497
BmsI	GCATC	1 cut(s)	464
BoxI	GACNNNNGTC	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu10I	CCTNAGC	1 cut(s)	434
Bpu1102I	GCTNAGC	1 cut(s)	670
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	385, 493
Bse1I	ACTGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	385, 493
BseGI	GGATG	2 cut(s)	429, 615
BseMII	CTCAG	4 cut(s)	64, 326, 425, 684
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	5 cut(s)	162, 165, 168, 568, 673
BseXI	GCAGC	3 cut(s)	24, 190, 290
BshFI	GGCC	3 cut(s)	173, 295, 481
BsiHKAI	GWGCWC	1 cut(s)	560
BslFI	GGGAC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	3 cut(s)	173, 295, 481
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	59, 684
Bsp1720I	GCTNAGC	1 cut(s)	670
BspANI	GGCC	3 cut(s)	173, 295, 481
BspCNI	CTCAG	4 cut(s)	63, 327, 426, 683
BspMI	ACCTGC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	385, 493
BssMI	GATC	2 cut(s)	59, 684
BssSI	CACGAG	1 cut(s)	619
BssT1I	CCWWGG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	619
Bst4CI	ACNGT	4 cut(s)	197, 372, 386, 648
Bst6I	CTCTTC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	5 cut(s)	50, 289, 335, 434, 670
BstDSI	CCRYGG	1 cut(s)	385
BstEII	GGTNACC	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	429, 615
BstKTI	GATC	2 cut(s)	62, 687
BstMBI	GATC	2 cut(s)	59, 684
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstPAI	GACNNNNGTC	1 cut(s)	248
BstPI	GGTNACC	1 cut(s)	396
BstV1I	GCAGC	3 cut(s)	24, 190, 290
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	59, 684
BstYI	RGATCY	2 cut(s)	59, 684
BsuRI	GGCC	3 cut(s)	173, 295, 481
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	429, 615
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	250, 293, 497
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	1 cut(s)	73
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	5 cut(s)	50, 289, 335, 434, 670
DpnI	GATC	2 cut(s)	61, 686
DpnII	GATC	2 cut(s)	59, 684
EaeI	YGGCCR	2 cut(s)	171, 479
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Ecl136II	GAGCTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	250, 497
Eco53kI	GAGCTC	1 cut(s)	558
Eco91I	GGTNACC	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	558
EcoO65I	GGTNACC	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	1 cut(s)	76
FalI	AAGNNNNNCTT	6 cut(s)	14, 46, 49, 81, 335, 367
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	38, 179, 279
FokI	GGATG	2 cut(s)	416, 622
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	3 cut(s)	38, 179, 279
FspBI	CTAG	2 cut(s)	43, 634
GluI	GCNGC	3 cut(s)	38, 179, 279
HaeIII	GGCC	3 cut(s)	173, 295, 481
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	13, 244, 603
HphI	GGTGA	2 cut(s)	374, 390
Hpy166II	GTNNAC	3 cut(s)	243, 507, 586
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	4 cut(s)	253, 433, 607, 621
Hpy8I	GTNNAC	3 cut(s)	243, 507, 586
HpyAV	CCTTC	2 cut(s)	79, 557
HpyCH4III	ACNGT	4 cut(s)	197, 372, 386, 648
HpyCH4V	TGCA	2 cut(s)	227, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	5 cut(s)	50, 289, 335, 434, 670
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	59, 684
LmnI	GCTCC	4 cut(s)	331, 555, 563, 660
Lsp1109I	GCAGC	3 cut(s)	24, 190, 290
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	2 cut(s)	43, 634
MaeIII	GTNAC	3 cut(s)	380, 396, 642
MalI	GATC	2 cut(s)	61, 686
MboI	GATC	2 cut(s)	59, 684
MboII	GAAGA	6 cut(s)	22, 34, 69, 310, 550, 679
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	2 cut(s)	59, 684
MhlI	GDGCHC	1 cut(s)	560
MlsI	TGGCCA	2 cut(s)	173, 481
MluCI	AATT	4 cut(s)	104, 221, 324, 406
MluNI	TGGCCA	2 cut(s)	173, 481
MlyI	GAGTC	2 cut(s)	7, 238
MmeI	TCCRAC	2 cut(s)	437, 585
MnlI	CCTC	8 cut(s)	140, 143, 146, 175, 387, 453, 546, 651
Mox20I	TGGCCA	2 cut(s)	173, 481
MscI	TGGCCA	2 cut(s)	173, 481
MseI	TTAA	2 cut(s)	88, 421
Msp20I	TGGCCA	2 cut(s)	173, 481
MunI	CAATTG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	2 cut(s)	59, 684
NlaIII	CATG	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	380, 396
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	603
PkrI	GCNGC	3 cut(s)	39, 180, 280
PleI	GAGTC	2 cut(s)	7, 238
PpsI	GAGTC	2 cut(s)	7, 238
PshAI	GACNNNNGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	560
PspEI	GGTNACC	1 cut(s)	396
PspPI	GGNCC	3 cut(s)	250, 293, 497
PsuI	RGATCY	2 cut(s)	59, 684
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	2 cut(s)	88, 421
SatI	GCNGC	3 cut(s)	38, 179, 279
Sau3AI	GATC	2 cut(s)	59, 684
Sau96I	GGNCC	3 cut(s)	250, 293, 497
SchI	GAGTC	2 cut(s)	7, 238
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	1 cut(s)	464
SinI	GGWCC	2 cut(s)	250, 497
SmlI	CTYRAG	2 cut(s)	15, 182
SmoI	CTYRAG	2 cut(s)	15, 182
Sse9I	AATT	4 cut(s)	104, 221, 324, 406
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	2 cut(s)	43, 634
SstI	GAGCTC	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	4 cut(s)	197, 372, 386, 648
TasI	AATT	4 cut(s)	104, 221, 324, 406
TfiI	GAWTC	1 cut(s)	603
Tru1I	TTAA	2 cut(s)	88, 421
Tru9I	TTAA	2 cut(s)	88, 421
TseFI	GTSAC	2 cut(s)	380, 396
TseI	GCWGC	3 cut(s)	37, 178, 278
Tsp45I	GTSAC	2 cut(s)	380, 396
TspDTI	ATGAA	5 cut(s)	61, 107, 194, 200, 277
TspGWI	ACGGA	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	250, 497
XapI	RAATTY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	2 cut(s)	43, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.