Rorug05G0592900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004425
Physical Location & Seq
Forward (+)
79074969 .. 79078728
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0592900.1

Sequence Viewer

Length: 897 bp
ATGGGAGACAAGGATAAGCTCAAGACTGGTGTCTGGCCAACCGTTAAGCCCTTCATCAATGGCGGAGCCTCTGGTATGCTCGCTACCTGCGTCATCCAACCCATCGATATGATCAAGGTGAGAATTCAATTGGGTCAGGGCTCAGCTGGACAAGTTGCCAGGGCCATGATCAAGGAGGAGGGTTTTGGTTCATTGTATAAGGGTCTCTCTGCTGGACTACTAAGACAAGCTACATATACCACAGCTCGTCTTGGATCATTCAGGATTCTGACAAACAAAGCAATTGCGGCCAATGATGGGAAGCCCCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCTATTGGAGCATCTGTTGGAAGTCCAGCAGATTTAGCTCTCATTCGTATGCAGGCAGATGCCACTTTACCCCTTGCTCAGCGCCGTCACTATACAAATGCTTTCCATGCTCTTGGTCGCATTGTTGCAGATGAAGGGGTTTTGGCACTTTGGAAAGGTGCAGGCCCTACTGTGGTAAGAGCAATGGCATTGAACATGGGAATGCTTGCCTCTTATGACCAAAGTGTTGAGTTTTTCAAGGATTCCCTTGGTTGTGGTGAAGCTACTACAATATTGGGTGCAAGTACTGTTTCAGGTTTTTTTGCTGCAGCCTGCAGTTTGCCCTTTGATTATGTGAAAACCCAGATTCAGAAAATGCAACCTGATGCTGAGGGGAAGTATCCATACACTGGCTCTTTTGATTGTGCCATGAAAACCCTGAAAACAGGAGGACCATTGAAATTTTACACTGGGTTTCCGGTATATTGTGTTAGAATTGCCCCCCATGTCATGATGACATGGATCTTCCTCAACCAGATCCAGAAGTTGGAAGCTAAAGTTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

298

Amino Acids

31.77

Weight (kDa)

9.45

Isoelectric Point (pI)

21.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 14 - 90 7.1e-17 Mitochondrial carrier protein
Mito_carr PF00153 102 - 197 3.4e-20 Mitochondrial carrier protein
Mito_carr PF00153 208 - 292 1e-14 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 2 cut(s) 737, 874
AciI CCGC 2 cut(s) 63, 287
AclWI GGATC 3 cut(s) 262, 857, 859
AcoI YGGCCR 2 cut(s) 35, 288
AcsI RAATTY 2 cut(s) 123, 788
AfaI GTAC 1 cut(s) 634
AfiI CCNNNNNNNGG 5 cut(s) 297, 333, 520, 737, 874
AgsI TTSAA 4 cut(s) 128, 541, 586, 787
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 1 cut(s) 870
AluBI AGCT 7 cut(s) 19, 146, 230, 245, 386, 611, 881
AluI AGCT 7 cut(s) 19, 146, 230, 245, 386, 611, 881
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 3 cut(s) 262, 857, 859
AoxI GGCC 4 cut(s) 35, 162, 288, 511
ApeKI GCWGC 2 cut(s) 653, 656
ApoI RAATTY 2 cut(s) 123, 788
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 3 cut(s) 162, 512, 779
AsuHPI GGTGA 2 cut(s) 130, 617
AvaII GGWCC 1 cut(s) 779
BalI TGGCCA 1 cut(s) 37
BanII GRGCYC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 640, 668
BccI CCATC 2 cut(s) 110, 290
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 2 cut(s) 111, 168
BcoDI GTCTC 1 cut(s) 209
BfmI CTRYAG 2 cut(s) 654, 661
BfoI RGCGCY 1 cut(s) 433
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 3 cut(s) 288, 654, 657
BlpI GCTNAGC 2 cut(s) 142, 426
BlsI GCNGC 3 cut(s) 289, 655, 658
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 779
BmgT120I GGNCC 3 cut(s) 162, 512, 779
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 3 cut(s) 368, 397, 703
BmuI ACTGGG 1 cut(s) 807
BoxI GACNNNNGTC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 2 cut(s) 142, 426
BpuEI CTTGAG 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 159, 595
BsaWI WCCGGW 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 5 cut(s) 297, 333, 520, 737, 874
Bse1I ACTGG 3 cut(s) 31, 742, 802
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 159, 595
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 5 cut(s) 297, 333, 520, 737, 874
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 3 cut(s) 156, 440, 708
BseNI ACTGG 3 cut(s) 31, 742, 802
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 640, 668
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 4 cut(s) 37, 164, 290, 513
BshVI ATCGAT 1 cut(s) 105
BsiSI CCGG 1 cut(s) 806
BslI CCNNNNNNNGG 5 cut(s) 297, 333, 520, 737, 874
BsmAI GTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 4 cut(s) 37, 164, 290, 513
Bso31I GGTCTC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 5 cut(s) 111, 168, 254, 849, 864
Bsp1720I GCTNAGC 2 cut(s) 142, 426
BspACI CCGC 2 cut(s) 63, 287
BspANI GGCC 4 cut(s) 37, 164, 290, 513
BspCNI CTCAG 3 cut(s) 155, 439, 709
BspDI ATCGAT 1 cut(s) 105
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 2 cut(s) 658, 665
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 3 cut(s) 262, 857, 859
BspTNI GGTCTC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 3 cut(s) 31, 742, 802
BssECI CCNNGG 2 cut(s) 159, 595
BssMI GATC 5 cut(s) 111, 168, 254, 849, 864
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 43, 520, 637
BstC8I GCNNGC 5 cut(s) 81, 402, 511, 555, 661
BstDEI CTNAG 4 cut(s) 142, 221, 426, 717
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 5 cut(s) 114, 171, 257, 852, 867
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 5 cut(s) 111, 168, 254, 849, 864
BstMWI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
BstNI CCWGG 1 cut(s) 160
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 654, 661
BstV1I GCAGC 2 cut(s) 640, 668
BstX2I RGATCY 2 cut(s) 849, 864
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 2 cut(s) 849, 864
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 4 cut(s) 37, 164, 290, 513
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 735, 795
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 5 cut(s) 81, 402, 511, 555, 661
CciI TCATGA 1 cut(s) 837
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 162, 512, 779
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 633
CviAII CATG 7 cut(s) 166, 455, 544, 757, 833, 838, 846
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 4 cut(s) 142, 221, 426, 717
DpnI GATC 5 cut(s) 113, 170, 256, 851, 866
DpnII GATC 5 cut(s) 111, 168, 254, 849, 864
EaeI YGGCCR 2 cut(s) 35, 288
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 779
EcoO109I RGGNCCY 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 7 cut(s) 169, 458, 547, 760, 836, 841, 849
FatI CATG 7 cut(s) 165, 454, 543, 756, 832, 837, 845
FbaI TGATCA 2 cut(s) 111, 168
Fnu4HI GCNGC 3 cut(s) 288, 654, 657
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 288, 654, 657
GlaI GCGC 1 cut(s) 431
GluI GCNGC 3 cut(s) 288, 654, 657
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 4 cut(s) 37, 164, 290, 513
HapII CCGG 1 cut(s) 806
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 432
Hin1II CATG 7 cut(s) 169, 458, 547, 760, 836, 841, 849
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 3 cut(s) 265, 590, 694
HpaII CCGG 1 cut(s) 806
HphI GGTGA 2 cut(s) 130, 617
Hpy188I TCNGA 2 cut(s) 270, 699
Hpy188III TCNNGA 4 cut(s) 22, 262, 838, 868
HpyAV CCTTC 2 cut(s) 61, 476
HpyCH4III ACNGT 3 cut(s) 43, 520, 637
HpyCH4V TGCA 7 cut(s) 400, 476, 509, 629, 656, 663, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
HpyF3I CTNAG 4 cut(s) 142, 221, 426, 717
Hsp92II CATG 7 cut(s) 169, 458, 547, 760, 836, 841, 849
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 2 cut(s) 111, 168
Kzo9I GATC 5 cut(s) 111, 168, 254, 849, 864
LmnI GCTCC 2 cut(s) 65, 356
Lsp1109I GCAGC 2 cut(s) 640, 668
LweI GCATC 3 cut(s) 368, 397, 703
MaeIII GTNAC 1 cut(s) 434
MalI GATC 5 cut(s) 113, 170, 256, 851, 866
MboI GATC 5 cut(s) 111, 168, 254, 849, 864
MboII GAAGA 1 cut(s) 844
MfeI CAATTG 2 cut(s) 128, 282
MflI RGATCY 2 cut(s) 849, 864
MhlI GDGCHC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 5 cut(s) 123, 128, 282, 788, 822
MluNI TGGCCA 1 cut(s) 37
MmeI TCCRAC 3 cut(s) 121, 346, 855
MnlI CCTC 8 cut(s) 79, 169, 172, 321, 568, 712, 770, 866
Mox20I TGGCCA 1 cut(s) 37
MscI TGGCCA 1 cut(s) 37
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 3 cut(s) 107, 395, 548
Msp20I TGGCCA 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 2 cut(s) 128, 282
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
NdeII GATC 5 cut(s) 111, 168, 254, 849, 864
NlaIII CATG 7 cut(s) 169, 458, 547, 760, 836, 841, 849
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 434
PagI TCATGA 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 555
PfeI GAWTC 3 cut(s) 265, 590, 694
PflMI CCANNNNNTGG 2 cut(s) 737, 874
PkrI GCNGC 3 cut(s) 289, 655, 658
PshAI GACNNNNGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 162, 512, 779
PstI CTGCAG 2 cut(s) 658, 665
PsuI RGATCY 2 cut(s) 849, 864
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
RseI CAYNNNNRTG 3 cut(s) 107, 395, 548
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 3 cut(s) 288, 654, 657
Sau3AI GATC 5 cut(s) 111, 168, 254, 849, 864
Sau96I GGNCC 3 cut(s) 162, 512, 779
ScaI AGTACT 1 cut(s) 634
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 3 cut(s) 368, 397, 703
SfcI CTRYAG 2 cut(s) 654, 661
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 3 cut(s) 107, 395, 548
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 5 cut(s) 123, 128, 282, 788, 822
SsiI CCGC 2 cut(s) 63, 287
SspI AATATT 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 43, 520, 637
TaqI TCGA 1 cut(s) 105
TasI AATT 5 cut(s) 123, 128, 282, 788, 822
TatI WGTACW 1 cut(s) 632
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 3 cut(s) 265, 590, 694
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 742, 802
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 2 cut(s) 653, 656
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 4 cut(s) 43, 180, 495, 773
TspRI CASTG 2 cut(s) 742, 802
Van91I CCANNNNNTGG 2 cut(s) 737, 874
VpaK11BI GGWCC 1 cut(s) 779
XapI RAATTY 2 cut(s) 123, 788
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.