Rh6DG093900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004425
Physical Location & Seq
Forward (+)
11253432 .. 11265527
12096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG093900.1

Sequence Viewer

Length: 621 bp
ATGTCCATGCTCATTCGTCAAGCCCAAATAGCTGTTCCTTCTTCAACACCAACACTCGAATCCAATTTCACCGGCGATGTTGCCGATCTACGGTTTTCTGGAAGTGTTGCTGCCATGAGCATGGTGGGTCACATTCTTGGCCTTGGGGATAGACACTTGGATAATATCCTCATGGATTTCTGTAGTGGTGATATGGTACATATTGATTACAATGTTTGTTTTGATAAAGGGCAAAGACTAAAAATTCCAGAAATTGTACCCTTCCGCCTTACACAAACCATTGAAGCTGCATTAGGGATGACTGGAATAGAAGGTACCTTTAGGTCAAACTGTGAATCGGTTATTGGTGTTTTGAGGAAGAACAAAGACATACTTTTGATGTTACTAGAAGTGTTTGTTTGGGACCCTCTGGTGGAATGGACACGGGGAGATTTTCATGATGATGCTGCAATTGGCGGTGAAGAAAGGAAGGGCATGGAGTTGGCTGTCAGTCTGAGTTTATTTGCATCTCGTGTGCAGGAAATTCGTGTCCCGTTACAGCAAATGCAAATGCTGAAAAATCAACACGAAGCCAAGATCATTGAGATGAGCAAGAGAAGTATGCTGCCATTGAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

206

Amino Acids

23.04

Weight (kDa)

5.74

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI3_PI4_kinase PF00454 31 - 141 3.1e-36 Phosphatidylinositol 3- and 4-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 2 cut(s) 265, 456
AcsI RAATTY 2 cut(s) 243, 522
AfaI GTAC 3 cut(s) 198, 258, 316
AfiI CCNNNNNNNGG 2 cut(s) 90, 412
AgsI TTSAA 3 cut(s) 45, 284, 613
AjuI GAANNNNNNNTTGG 4 cut(s) 18, 50, 327, 359
AluBI AGCT 2 cut(s) 32, 287
AluI AGCT 2 cut(s) 32, 287
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 4 cut(s) 110, 287, 446, 604
ApoI RAATTY 2 cut(s) 243, 522
Asp718I GGTACC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 3 cut(s) 61, 200, 470
AvaII GGWCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 314
BauI CACGAG 1 cut(s) 510
BbvI GCAGC 4 cut(s) 97, 274, 433, 591
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 4 cut(s) 111, 288, 447, 605
BlsI GCNGC 4 cut(s) 112, 289, 448, 606
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 3 cut(s) 316, 404, 405
BmsI GCATC 2 cut(s) 433, 515
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 412
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 90, 412
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 97, 274, 433, 591
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 2 cut(s) 416, 515
BslI CCNNNNNNNGG 2 cut(s) 90, 412
BsmFI GGGAC 2 cut(s) 416, 515
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 85, 576
BspACI CCGC 2 cut(s) 265, 456
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 486
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 3 cut(s) 316, 404, 405
BspT107I GGYRCC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 85, 576
BssSI CACGAG 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 93, 332
BstDEI CTNAG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 2 cut(s) 88, 579
BstMBI GATC 2 cut(s) 85, 576
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 4 cut(s) 97, 274, 433, 591
BstXI CCANNNNNNTGG 1 cut(s) 121
BsuRI GGCC 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 303
CciI TCATGA 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 403
Csp6I GTAC 3 cut(s) 197, 257, 315
CviAII CATG 6 cut(s) 7, 115, 121, 172, 437, 475
CviJI RGCY 6 cut(s) 23, 32, 141, 287, 485, 572
CviKI_1 RGCY 6 cut(s) 23, 32, 141, 287, 485, 572
CviQI GTAC 3 cut(s) 197, 257, 315
DdeI CTNAG 1 cut(s) 494
DpnI GATC 2 cut(s) 87, 578
DpnII GATC 2 cut(s) 85, 576
EciI GGCGGA 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 6 cut(s) 10, 118, 124, 175, 440, 478
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 2 cut(s) 416, 515
FatI CATG 6 cut(s) 6, 114, 120, 171, 436, 474
Fnu4HI GCNGC 4 cut(s) 111, 288, 447, 605
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 4 cut(s) 111, 288, 447, 605
FspBI CTAG 1 cut(s) 386
GluI GCNGC 4 cut(s) 111, 288, 447, 605
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 72
Hin1II CATG 6 cut(s) 10, 118, 124, 175, 440, 478
HinfI GANTC 2 cut(s) 59, 335
HpaII CCGG 1 cut(s) 72
HphI GGTGA 3 cut(s) 61, 200, 470
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 3 cut(s) 99, 248, 437
HpyAV CCTTC 4 cut(s) 48, 271, 305, 463
HpyCH4III ACNGT 2 cut(s) 93, 332
HpyCH4V TGCA 5 cut(s) 290, 449, 506, 517, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 494
Hsp92II CATG 6 cut(s) 10, 118, 124, 175, 440, 478
KflI GGGWCCC 1 cut(s) 403
KpnI GGTACC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 85, 576
LpnPI CCDG 6 cut(s) 84, 85, 261, 288, 395, 503
Lsp1109I GCAGC 4 cut(s) 97, 274, 433, 591
LweI GCATC 2 cut(s) 433, 515
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 3 cut(s) 128, 381, 534
MalI GATC 2 cut(s) 87, 578
MboI GATC 2 cut(s) 85, 576
MboII GAAGA 3 cut(s) 33, 370, 473
MfeI CAATTG 1 cut(s) 450
MluCI AATT 5 cut(s) 64, 243, 252, 450, 522
MnlI CCTC 3 cut(s) 179, 348, 417
MslI CAYNNNNRTG 3 cut(s) 119, 441, 584
MspI CCGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 85, 576
NlaIII CATG 6 cut(s) 10, 118, 124, 175, 440, 478
NlaIV GGNNCC 3 cut(s) 316, 404, 405
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 1 cut(s) 436
PfeI GAWTC 2 cut(s) 59, 335
PkrI GCNGC 4 cut(s) 112, 289, 448, 606
PpuMI RGGWCCY 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 316, 404, 405
PspPI GGNCC 1 cut(s) 403
PspPPI RGGWCCY 1 cut(s) 403
RsaI GTAC 3 cut(s) 198, 258, 316
RsaNI GTAC 3 cut(s) 197, 257, 315
RseI CAYNNNNRTG 3 cut(s) 119, 441, 584
SatI GCNGC 4 cut(s) 111, 288, 447, 605
Sau3AI GATC 2 cut(s) 85, 576
Sau96I GGNCC 1 cut(s) 403
SetI ASST 5 cut(s) 34, 289, 316, 320, 326
SfaNI GCATC 2 cut(s) 433, 515
SfcI CTRYAG 1 cut(s) 181
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 3 cut(s) 119, 441, 584
Sse9I AATT 5 cut(s) 64, 243, 252, 450, 522
SsiI CCGC 2 cut(s) 265, 456
SspMI CTAG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 93, 332
TaqI TCGA 1 cut(s) 57
TasI AATT 5 cut(s) 64, 243, 252, 450, 522
TfiI GAWTC 2 cut(s) 59, 335
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 4 cut(s) 110, 287, 446, 604
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 2 cut(s) 243, 522
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.