Rh6CG102000

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004425
Physical Location & Seq
Forward (+)
11309257 .. 11318951
9695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG102000.1

Sequence Viewer

Length: 1098 bp
ATGAAACAAAAAACTGGCAGCTATACTCTTAGGGCCACATTGTATGTCCTGCATATTCTTCTCAATTATGGAGCTGAGTTGAAAGATATACTTGAACCTGCTCTTTCAACAGTTCCTTTGTCACCGTGGCAGGAGGTCACCCCCCAATTGTTTGCTCGGTTAAGTTCTCATCCTGAGCAAGTGGTACGGAAGCAGTTGGAGGGCTTATTGATGATGCTGGCCAAACAATCTCCTTGGTCCATCGTCTACCCGACATTAGTTGATGTGAATGCTTACGAAGAGAAGCCTTCGGAGGAGCTCCAACACATACTTGGTTGTTTGAGTGAACTATACCCAAGACTGATTCAGGATGTCCAGCTCGTGATAAATGAGCTAGGAAATGTTACTGTTCTTTGGGAGGAGCTATGGCTCAGCACACTCCAAGATCTTCACACAGATGTGACGAGGCGCATAAATGTACTAAAGGAGGAAGCTGCACGAATTGCAGAAAATATCACTCTTAGCCAGAGTGAGAAGAACAAGATAAATGCCGCGAAATACTCAGCCATGATGGCTCCTATTGTTGTGGCCTTAGAACGTCGTCTATCTTCCACATCTCGGAAACCTGAAACACCTCATGAGGTATGGTTCCATGAGGAATATAAAGATCGGTTGAAATCGGCCATCACAGCCTTCAAGACACCTCCAGCATCTGCTACAGCACTTGGAGATGCATGGCGTCCATTTGATATTATTGCTGCCTCCTTGGCATCTTATCAAAGGAAGTCATCAATTTGTTTAAGAGAAGTCGCACCACAATTGGCTCTACTATCATCGTCTGATGTTCCAATGCCTGGTCTTGAAAAGCAAGATACAGTCTCTGAATCTGACAGAGGTCTCAGTGCTAATCTTCAAGGAATTGTTACCATTGCTTCTTTCTCTGAGGACGTGGCTATCATATCAACTAAGACTAAACCTAAGAAACTTGTTATTCTTGGTTCTGATGGTCAAAAGTACACATATCTTTTGAAAGGAAGGGAAGATCTCCGGCTTGATGCCAGAATCATGCAGCTCTTGCAAGCTATCAACGGTTTTCTGCTCCTCAGTCGCAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

365

Amino Acids

40.89

Weight (kDa)

6.63

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccB7I CCANNNNNTGG 1 cut(s) 833
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 533
AciI CCGC 1 cut(s) 531
AcoI YGGCCR 2 cut(s) 219, 660
AcyI GRCGYC 1 cut(s) 718
AfaI GTAC 3 cut(s) 186, 459, 995
AfiI CCNNNNNNNGG 2 cut(s) 597, 833
AgsI TTSAA 8 cut(s) 82, 95, 108, 655, 676, 842, 893, 1009
AjiI CACGTC 1 cut(s) 928
AjnI CCWGG 1 cut(s) 832
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 9 cut(s) 21, 74, 298, 358, 373, 403, 473, 1051, 1061
AluI AGCT 9 cut(s) 21, 74, 298, 358, 373, 403, 473, 1051, 1061
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 862, 881
AlwNI CAGNNNCTG 2 cut(s) 692, 860
AoxI GGCC 4 cut(s) 33, 219, 567, 660
ApeKI GCWGC 4 cut(s) 18, 473, 737, 1048
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 2 cut(s) 33, 237
AsuHPI GGTGA 2 cut(s) 114, 130
AvaII GGWCC 1 cut(s) 237
BalI TGGCCA 1 cut(s) 221
BanII GRGCYC 1 cut(s) 300
BauI CACGAG 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 4 cut(s) 30, 460, 724, 1060
BccI CCATC 4 cut(s) 248, 544, 671, 977
BciT130I CCWGG 1 cut(s) 834
BcoDI GTCTC 2 cut(s) 862, 881
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 106
BglI GCCNNNNNGGC 2 cut(s) 551, 746
BglII AGATCT 2 cut(s) 424, 1021
BisI GCNGC 5 cut(s) 19, 474, 531, 738, 1049
BlpI GCTNAGC 1 cut(s) 410
BlsI GCNGC 5 cut(s) 20, 475, 532, 739, 1050
Bme1390I CCNGG 1 cut(s) 834
Bme18I GGWCC 1 cut(s) 237
BmgBI CACGTC 1 cut(s) 928
BmgT120I GGNCC 2 cut(s) 33, 237
BmiI GGNNCC 2 cut(s) 555, 629
BmrFI CCNGG 1 cut(s) 834
BmsI GCATC 5 cut(s) 204, 698, 700, 758, 1024
BoxI GACNNNNGTC 1 cut(s) 873
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 718
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 125, 233, 744
Bsc4I CCNNNNNNNGG 2 cut(s) 597, 833
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 3 cut(s) 125, 233, 744
BseGI GGATG 2 cut(s) 169, 355
BseLI CCNNNNNNNGG 2 cut(s) 597, 833
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 7 cut(s) 66, 165, 424, 555, 892, 912, 1096
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 3 cut(s) 308, 413, 1070
BseXI GCAGC 4 cut(s) 30, 460, 724, 1060
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 533
BshFI GGCC 4 cut(s) 35, 221, 569, 662
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 1 cut(s) 1027
BslI CCNNNNNNNGG 2 cut(s) 597, 833
BsmAI GTCTC 2 cut(s) 862, 881
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 4 cut(s) 35, 221, 569, 662
Bso31I GGTCTC 1 cut(s) 881
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 3 cut(s) 424, 646, 1021
Bsp1720I GCTNAGC 1 cut(s) 410
BspACI CCGC 1 cut(s) 531
BspANI GGCC 4 cut(s) 35, 221, 569, 662
BspCNI CTCAG 7 cut(s) 67, 166, 423, 554, 891, 913, 1095
BspFNI CGCG 1 cut(s) 533
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 555, 629
BspMI ACCTGC 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 881
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 3 cut(s) 125, 233, 744
BssMI GATC 3 cut(s) 424, 646, 1021
BssNI GRCGYC 1 cut(s) 718
BssSI CACGAG 1 cut(s) 359
BssT1I CCWWGG 2 cut(s) 233, 744
Bst2BI CACGAG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 5 cut(s) 112, 126, 388, 856, 1070
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 718
BstAPI GCANNNNNTGC 2 cut(s) 482, 1054
BstC8I GCNNGC 2 cut(s) 219, 1059
BstDSI CCRYGG 1 cut(s) 125
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 2 cut(s) 169, 355
BstFNI CGCG 1 cut(s) 533
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 3 cut(s) 427, 649, 1024
BstMAI GTCTC 2 cut(s) 862, 881
BstMBI GATC 3 cut(s) 424, 646, 1021
BstMWI GCNNNNNNNGC 5 cut(s) 482, 551, 668, 746, 1054
BstNI CCWGG 1 cut(s) 834
BstPAI GACNNNNGTC 1 cut(s) 873
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 696
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 4 cut(s) 30, 460, 724, 1060
BstX2I RGATCY 2 cut(s) 424, 1021
BstYI RGATCY 2 cut(s) 424, 1021
BsuRI GGCC 4 cut(s) 35, 221, 569, 662
BtgI CCRYGG 1 cut(s) 125
BtrI CACGTC 1 cut(s) 928
BtsCI GGATG 2 cut(s) 169, 355
BtsIMutI CAGTG 1 cut(s) 886
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 219, 1059
CaiI CAGNNNCTG 2 cut(s) 692, 860
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 33, 237
CseI GACGC 1 cut(s) 707
Csp6I GTAC 3 cut(s) 185, 458, 994
CviAII CATG 5 cut(s) 547, 617, 632, 714, 1045
CviQI GTAC 3 cut(s) 185, 458, 994
DpnI GATC 3 cut(s) 426, 648, 1023
DpnII GATC 3 cut(s) 424, 646, 1021
EaeI YGGCCR 2 cut(s) 219, 660
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 233, 744
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 881
Eco47I GGWCC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 298
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 298
EcoO65I GGTNACC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 832
EcoT14I CCWWGG 2 cut(s) 233, 744
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 2 cut(s) 233, 744
FaeI CATG 5 cut(s) 550, 620, 635, 717, 1048
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 5 cut(s) 546, 616, 631, 713, 1044
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 5 cut(s) 19, 474, 531, 738, 1049
FokI GGATG 2 cut(s) 156, 362
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 5 cut(s) 19, 474, 531, 738, 1049
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 449
GluI GCNGC 5 cut(s) 19, 474, 531, 738, 1049
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 4 cut(s) 35, 221, 569, 662
HapII CCGG 1 cut(s) 1027
HgaI GACGC 1 cut(s) 707
HhaI GCGC 1 cut(s) 450
Hin1I GRCGYC 1 cut(s) 718
Hin1II CATG 5 cut(s) 550, 620, 635, 717, 1048
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HinfI GANTC 3 cut(s) 343, 863, 1041
HpaII CCGG 1 cut(s) 1027
HphI GGTGA 2 cut(s) 114, 130
Hpy166II GTNNAC 3 cut(s) 247, 326, 996
Hpy188I TCNGA 7 cut(s) 292, 600, 820, 862, 868, 922, 982
Hpy188III TCNNGA 6 cut(s) 173, 347, 361, 617, 676, 839
Hpy8I GTNNAC 3 cut(s) 247, 326, 996
Hpy99I CGWCG 1 cut(s) 582
HpyAV CCTTC 3 cut(s) 297, 682, 1008
HpyCH4III ACNGT 5 cut(s) 112, 126, 388, 856, 1070
HpyCH4IV ACGT 2 cut(s) 577, 927
HpyCH4V TGCA 6 cut(s) 52, 476, 485, 713, 1048, 1057
HpyF10VI GCNNNNNNNGC 5 cut(s) 482, 551, 668, 746, 1054
HpySE526I ACGT 2 cut(s) 577, 927
Hsp92I GRCGYC 1 cut(s) 718
Hsp92II CATG 5 cut(s) 550, 620, 635, 717, 1048
HspAI GCGC 1 cut(s) 448
Kzo9I GATC 3 cut(s) 424, 646, 1021
LmnI GCTCC 6 cut(s) 71, 295, 303, 400, 559, 1083
Lsp1109I GCAGC 4 cut(s) 30, 460, 724, 1060
LweI GCATC 5 cut(s) 204, 698, 700, 758, 1024
MaeI CTAG 1 cut(s) 374
MaeII ACGT 2 cut(s) 577, 927
MaeIII GTNAC 5 cut(s) 120, 136, 382, 439, 901
MalI GATC 3 cut(s) 426, 648, 1023
MboI GATC 3 cut(s) 424, 646, 1021
MboII GAAGA 7 cut(s) 50, 290, 419, 526, 579, 881, 1031
MfeI CAATTG 2 cut(s) 146, 797
MflI RGATCY 2 cut(s) 424, 1021
MhlI GDGCHC 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 6 cut(s) 64, 146, 480, 771, 797, 897
MluNI TGGCCA 1 cut(s) 221
MmeI TCCRAC 2 cut(s) 177, 325
Mox20I TGGCCA 1 cut(s) 221
Mph1103I ATGCAT 1 cut(s) 715
MscI TGGCCA 1 cut(s) 221
MseI TTAA 2 cut(s) 161, 779
MslI CAYNNNNRTG 2 cut(s) 435, 437
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 1 cut(s) 1027
MspR9I CCNGG 1 cut(s) 834
MunI CAATTG 2 cut(s) 146, 797
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 5 cut(s) 482, 551, 668, 746, 1054
NdeII GATC 3 cut(s) 424, 646, 1021
NlaIII CATG 5 cut(s) 550, 620, 635, 717, 1048
NlaIV GGNNCC 2 cut(s) 555, 629
NmuCI GTSAC 3 cut(s) 120, 136, 439
NsiI ATGCAT 1 cut(s) 715
OliI CACNNNNGTG 1 cut(s) 437
PagI TCATGA 1 cut(s) 616
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 3 cut(s) 343, 863, 1041
PflMI CCANNNNNTGG 1 cut(s) 833
PkrI GCNGC 5 cut(s) 20, 475, 532, 739, 1050
PshAI GACNNNNGTC 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 832
PspEI GGTNACC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 2 cut(s) 555, 629
PspPI GGNCC 2 cut(s) 33, 237
PstNI CAGNNNCTG 2 cut(s) 692, 860
PsuI RGATCY 2 cut(s) 424, 1021
RsaI GTAC 3 cut(s) 186, 459, 995
RsaNI GTAC 3 cut(s) 185, 458, 994
RseI CAYNNNNRTG 2 cut(s) 435, 437
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 161, 779
SatI GCNGC 5 cut(s) 19, 474, 531, 738, 1049
Sau3AI GATC 3 cut(s) 424, 646, 1021
Sau96I GGNCC 2 cut(s) 33, 237
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 5 cut(s) 204, 698, 700, 758, 1024
SfcI CTRYAG 1 cut(s) 696
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 2 cut(s) 435, 437
Sse9I AATT 6 cut(s) 64, 146, 480, 771, 797, 897
SsiI CCGC 1 cut(s) 531
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 832
StyI CCWWGG 2 cut(s) 233, 744
TaaI ACNGT 5 cut(s) 112, 126, 388, 856, 1070
TaiI ACGT 2 cut(s) 580, 930
TasI AATT 6 cut(s) 64, 146, 480, 771, 797, 897
TatI WGTACW 2 cut(s) 457, 993
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 3 cut(s) 343, 863, 1041
Tru1I TTAA 2 cut(s) 161, 779
Tru9I TTAA 2 cut(s) 161, 779
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 3 cut(s) 120, 136, 439
TseI GCWGC 4 cut(s) 18, 473, 737, 1048
Tsp45I GTSAC 3 cut(s) 120, 136, 439
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 886
Van91I CCANNNNNTGG 1 cut(s) 833
VpaK11BI GGWCC 1 cut(s) 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 374
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.