Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004425

Physical Location & Seq

Genomic Coordinates Forward (+)

10781459 .. 10782375

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG097700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAATTCGCTTGCAGAGTAAACTATACCCAAGATTGATTCAGGATGTGCAGCTCGTGATAAATGAGCTAGGAAATGTCACTGTTCTTTGTGAGGAGCTATGGCTCAGCACACTCCAAGATCTTCACACAGATGTGACGAGGCGCATAAATGTACTGAAGGAGGAAGCTGCACGAATTGCAGAAAATATTACTCTTAGCCATAGTGAGAAGAACAAGATAAATGCTGCTAAATACTCCGCTATATATGATGGCTCCTATTGTTGTGGCCTTAGAACGTCGTCTGTCTTCCACATCTCGGAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

102

Amino Acids

11.62

Weight (kDa)

5.87

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35075
fragaria_vesca	FvH4_2g07370 FvH4_2g07370
malus_domestica	MD10G1086500.v1.1 MD14G1180200.v1.1
prunus_persica	Prupe.8G112500_v2.0.a1
pyrus_communis	pycom10g06870
rosa_chinensis	RchiOBHm_Chr6g0260251 RchiOBHm_Chr6g0260261 RchiOBHm_Chr6g0260791
rosa_laevigata	RLG00000014485
rosa_multiflora	Rmu_co8055024.1_g000001 Rmu_co8166074.1_g000001 Rmu_sc0014629.1_g000010 Rmu_sc0023276.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207390
rosa_rugosa	Rorug05G0592900
rosa_samantha	Rh6AG109300 Rh6AG110500 Rh6AG112300 Rh6BG106200 Rh6CG097700 Rh6CG098100 Rh6CG102000 Rh6CG102200 Rh6CG103000 Rh6DG091700 Rh6DG093600 Rh6DG093900 Rh6DG094300
rosa_wichuraiana	Rw6G009500 Rw6G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	4 cut(s)	55, 70, 100, 170
AluI	AGCT	4 cut(s)	55, 70, 100, 170
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	3 cut(s)	52, 170, 227
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	147
BauI	CACGAG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	3 cut(s)	64, 157, 214
BccI	CCATC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	71
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	3 cut(s)	53, 171, 228
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	3 cut(s)	54, 172, 229
BmiI	GGNNCC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	64, 157, 214
BsgI	GTGCAG	2 cut(s)	71, 156
BshFI	GGCC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	298
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	121
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	256
BssMI	GATC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	107, 197, 272
BstF5I	GGATG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	64, 157, 214
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	155
CviJI	RGCY	8 cut(s)	55, 70, 100, 106, 170, 201, 255, 270
CviKI_1	RGCY	8 cut(s)	55, 70, 100, 106, 170, 201, 255, 270
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	107, 197, 272
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	179
FaiI	YATR	7 cut(s)	28, 103, 149, 204, 245, 247, 249
Fnu4HI	GCNGC	3 cut(s)	53, 171, 228
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	53, 171, 228
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	3 cut(s)	53, 171, 228
HaeIII	GGCC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	44, 58
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	4 cut(s)	16, 52, 173, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	3 cut(s)	107, 197, 272
HpySE526I	ACGT	1 cut(s)	278
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	97, 260
LpnPI	CCDG	1 cut(s)	29
Lsp1109I	GCAGC	3 cut(s)	64, 157, 214
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	2 cut(s)	79, 136
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	116, 223, 280
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	6, 177
MnlI	CCTC	3 cut(s)	88, 135, 157
MslI	CAYNNNNRTG	2 cut(s)	132, 134
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	79, 136
OliI	CACNNNNGTG	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	54, 172, 229
PspN4I	GGNNCC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	2 cut(s)	132, 134
SatI	GCNGC	3 cut(s)	53, 171, 228
Sau3AI	GATC	1 cut(s)	121
SetI	ASST	6 cut(s)	57, 72, 102, 172, 281, 308
SmiMI	CAYNNNNRTG	2 cut(s)	132, 134
Sse9I	AATT	2 cut(s)	6, 177
SsiI	CCGC	1 cut(s)	240
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	281
TasI	AATT	2 cut(s)	6, 177
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	2 cut(s)	79, 136
TseI	GCWGC	3 cut(s)	52, 170, 227
Tsp45I	GTSAC	2 cut(s)	79, 136
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	6
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.