Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8426839.1

Orthogroup ID

OG0010577

Physical Location & Seq

Genomic Coordinates Forward (+)

449 .. 1405

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8426839.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgtgggggtgggggtgggggtggggaaaagcttcaaggtgcaagaaactactcaaacaagtccggtcccggcttgagtccttgaaagaggaaaggtctactatttctacagagttagggaaagatgttgaggagctagactacaaggcactgaacctcagggtcgaacaggaacagcatatcagagacgaatcttcggtgtacactttgctcgaccatttctgcaagctcatcctcatgcacttcttttatatacgaacgcacaggcaatgtcgtcaaagagacctagctgtagcagtttcaagtcttgtctttgcttcttcaagcttaggacgtggggtgattcctgagtttgaggagatcagggacttactcggagagcgttacggggagagttttgttgaaactgctgtgaagttgttgcctgggaatcttgtaaaccctaacttccagaagaatattctcgctctctccccagaaacagtggtgcctaatgatatagtaaaacatgaactggttaaaccctcttttactacttcttctcctgatgaggcaccagaaagatcatcagcagagaaaaaggacgacgagaatcggaacaatgaattacaacttatcagcttacaatctcctatgcatgtccaccccaaattgcctgattgggatgatatatttactaagttcagtgctctcaagaagcccaagtatttgcaccctaagttgccggaatatgatgatattacagccaagtttaatgctctcaagatccccatgaatgagaaccctcctaataactaccagttgcaattagagtaccatgacgatcatgacaatattgatgatagagccatattcgactattccaggctctcgattgagagcagctgcaatttgataagcccgtccccaatgttgttattaacgcaatcaccccatattgaatacctagcttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

318

Amino Acids

36.77

Weight (kDa)

5.71

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010577)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05851 FvH4_6g24690
rosa_laevigata	RLG00000023216 RLG00000023236
rosa_multiflora	Rmu_co8426839.1_g000001 Rmu_sc0000295.1_g000006 Rmu_sc0000295.1_g000044 Rmu_sc0003262.1_g000003
rosa_roxburghii	Rroxscaffold_6G00397600 Rroxscaffold_6G00397820
rosa_rugosa	Rorug03G0210500 Rorug03G0212600
rosa_samantha	Rh3AG259400 Rh3BG296000 Rh3BG298200 Rh3CG293500 Rh3CG295200 Rh3DG288900 Rh3DG289400 Rh3DG291500
rosa_wichuraiana	Rw3G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	487, 553
AccI	GTMKAC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	760
AfaI	GTAC	2 cut(s)	203, 815
AgsI	TTSAA	6 cut(s)	36, 85, 303, 324, 404, 941
AjiI	CACGTC	1 cut(s)	335
AjnI	CCWGG	2 cut(s)	424, 863
AluBI	AGCT	8 cut(s)	32, 136, 229, 290, 327, 621, 885, 950
AluI	AGCT	8 cut(s)	32, 136, 229, 290, 327, 621, 885, 950
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	2 cut(s)	180, 276
AlwI	GGATC	1 cut(s)	760
ApeKI	GCWGC	2 cut(s)	882, 885
Asp700I	GAANNNNTTC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	352, 921
AvaII	GGWCC	1 cut(s)	66
AxyI	CCTNAGG	1 cut(s)	158
BanI	GGYRCC	2 cut(s)	487, 553
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	2 cut(s)	872, 894
BciT130I	CCWGG	2 cut(s)	426, 865
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	180, 276
BfaI	CTAG	3 cut(s)	137, 287, 947
BfmI	CTRYAG	2 cut(s)	108, 291
BisI	GCNGC	2 cut(s)	883, 886
BlsI	GCNGC	2 cut(s)	884, 887
Bme1390I	CCNGG	3 cut(s)	70, 426, 865
Bme18I	GGWCC	1 cut(s)	66
BmgBI	CACGTC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	3 cut(s)	68, 489, 555
BmrFI	CCNGG	3 cut(s)	70, 426, 865
Bpu10I	CCTNAGC	1 cut(s)	328
BpuEI	CTTGAG	3 cut(s)	95, 677, 746
BpuMI	CCSGG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse1I	ACTGG	2 cut(s)	519, 799
Bse21I	CCTNAGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	426, 865
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	2 cut(s)	231, 670
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	172, 339
BseNI	ACTGG	2 cut(s)	519, 799
BseRI	GAGGAG	2 cut(s)	146, 371
BseXI	GCAGC	2 cut(s)	872, 894
BshNI	GGYRCC	2 cut(s)	487, 553
BsiHKAI	GWGCWC	1 cut(s)	691
BsiSI	CCGG	3 cut(s)	64, 70, 725
BslFI	GGGAC	3 cut(s)	52, 380, 889
BsmAI	GTCTC	2 cut(s)	180, 276
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	3 cut(s)	52, 380, 889
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	360, 563, 765, 823
BspCNI	CTCAG	2 cut(s)	171, 340
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	3 cut(s)	68, 489, 555
BspPI	GGATC	1 cut(s)	760
BspT107I	GGYRCC	2 cut(s)	487, 553
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	519, 799
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	4 cut(s)	360, 563, 765, 823
Bst2UI	CCWGG	2 cut(s)	426, 865
Bst4CI	ACNGT	1 cut(s)	484
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	5 cut(s)	158, 328, 348, 678, 717
BstF5I	GGATG	2 cut(s)	231, 670
BstKTI	GATC	4 cut(s)	363, 566, 768, 826
BstMAI	GTCTC	2 cut(s)	180, 276
BstMBI	GATC	4 cut(s)	360, 563, 765, 823
BstNI	CCWGG	2 cut(s)	426, 865
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	68, 424, 863
BstSFI	CTRYAG	2 cut(s)	108, 291
BstV1I	GCAGC	2 cut(s)	872, 894
BstX2I	RGATCY	1 cut(s)	765
BstYI	RGATCY	1 cut(s)	765
Bsu36I	CCTNAGG	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	231, 670
BtsIMutI	CAGTG	3 cut(s)	149, 489, 691
Cac8I	GCNNGC	1 cut(s)	227
CciI	TCATGA	1 cut(s)	826
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	202, 814
CviAII	CATG	6 cut(s)	238, 509, 638, 772, 818, 827
CviQI	GTAC	2 cut(s)	202, 814
DdeI	CTNAG	5 cut(s)	158, 328, 348, 678, 717
DpnI	GATC	4 cut(s)	362, 565, 767, 825
DpnII	GATC	4 cut(s)	360, 563, 765, 823
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	424, 863
EcoT22I	ATGCAT	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	6 cut(s)	241, 512, 641, 775, 821, 830
FaqI	GGGAC	3 cut(s)	52, 380, 889
FatI	CATG	6 cut(s)	237, 508, 637, 771, 817, 826
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	883, 886
FokI	GGATG	2 cut(s)	218, 677
Fsp4HI	GCNGC	2 cut(s)	883, 886
FspBI	CTAG	3 cut(s)	137, 287, 947
GluI	GCNGC	2 cut(s)	883, 886
HapII	CCGG	3 cut(s)	64, 70, 725
Hin1II	CATG	6 cut(s)	241, 512, 641, 775, 821, 830
HindIII	AAGCTT	2 cut(s)	30, 325
HinfI	GANTC	5 cut(s)	77, 191, 343, 430, 592
HpaII	CCGG	3 cut(s)	64, 70, 725
HphI	GGTGA	2 cut(s)	352, 921
Hpy166II	GTNNAC	5 cut(s)	99, 202, 204, 439, 643
Hpy188I	TCNGA	3 cut(s)	185, 377, 597
Hpy188III	TCNNGA	7 cut(s)	347, 451, 545, 694, 763, 827, 871
Hpy8I	GTNNAC	5 cut(s)	99, 202, 204, 439, 643
Hpy99I	CGWCG	1 cut(s)	590
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	7 cut(s)	42, 225, 241, 637, 712, 805, 888
HpyF3I	CTNAG	5 cut(s)	158, 328, 348, 678, 717
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	6 cut(s)	241, 512, 641, 775, 821, 830
Kzo9I	GATC	4 cut(s)	360, 563, 765, 823
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	2 cut(s)	872, 894
MaeI	CTAG	3 cut(s)	137, 287, 947
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	4 cut(s)	362, 565, 767, 825
MboI	GATC	4 cut(s)	360, 563, 765, 823
MboII	GAAGA	4 cut(s)	186, 312, 466, 531
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	1 cut(s)	691
MluCI	AATT	4 cut(s)	605, 650, 806, 889
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	8 cut(s)	82, 124, 167, 245, 349, 535, 544, 795
Mph1103I	ATGCAT	1 cut(s)	639
MroXI	GAANNNNTTC	1 cut(s)	31
MseI	TTAA	3 cut(s)	519, 753, 920
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	885
MspI	CCGG	3 cut(s)	64, 70, 725
MspR9I	CCNGG	3 cut(s)	70, 426, 865
MvaI	CCWGG	2 cut(s)	426, 865
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	4 cut(s)	360, 563, 765, 823
NlaIII	CATG	6 cut(s)	241, 512, 641, 775, 821, 830
NlaIV	GGNNCC	3 cut(s)	68, 489, 555
NsiI	ATGCAT	1 cut(s)	639
NspI	RCATGY	1 cut(s)	641
PagI	TCATGA	1 cut(s)	826
PdmI	GAANNNNTTC	1 cut(s)	31
PfeI	GAWTC	4 cut(s)	191, 343, 430, 592
PkrI	GCNGC	2 cut(s)	884, 887
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	424, 863
PspGI	CCWGG	2 cut(s)	424, 863
PspN4I	GGNNCC	3 cut(s)	68, 489, 555
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	765
PvuII	CAGCTG	1 cut(s)	885
RsaI	GTAC	2 cut(s)	203, 815
RsaNI	GTAC	2 cut(s)	202, 814
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	519, 753, 920
SatI	GCNGC	2 cut(s)	883, 886
Sau3AI	GATC	4 cut(s)	360, 563, 765, 823
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	70, 426, 865
SduI	GDGCHC	1 cut(s)	691
SfcI	CTRYAG	2 cut(s)	108, 291
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	3 cut(s)	74, 692, 761
SmoI	CTYRAG	3 cut(s)	74, 692, 761
Sse9I	AATT	4 cut(s)	605, 650, 806, 889
SspI	AATATT	2 cut(s)	460, 835
SspMI	CTAG	3 cut(s)	137, 287, 947
StyD4I	CCNGG	3 cut(s)	68, 424, 863
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	4 cut(s)	165, 213, 855, 872
TasI	AATT	4 cut(s)	605, 650, 806, 889
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	4 cut(s)	191, 343, 430, 592
Tru1I	TTAA	3 cut(s)	519, 753, 920
Tru9I	TTAA	3 cut(s)	519, 753, 920
TscAI	CASTG	3 cut(s)	156, 489, 691
TseI	GCWGC	2 cut(s)	882, 885
TspDTI	ATGAA	3 cut(s)	525, 618, 788
TspRI	CASTG	3 cut(s)	156, 489, 691
VpaK11BI	GGWCC	1 cut(s)	66
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	31
XspI	CTAG	3 cut(s)	137, 287, 947
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.