Rh3DG288900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010577
Physical Location & Seq
Forward (+)
29818881 .. 29827540
8660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG288900.1

Sequence Viewer

Length: 309 bp
ATGGAAATTCAAGACTCAAATTTCAAACTTGAGAATGCTCAGGGAAGAACTACAGCTTCTGTAAGAGCCTGCACAAAGTTCAGTGCTCTCAAGAAGCCTAAGTATGTGAACCCGAAGTTGCCAGAATATGATAATATTATGGCCAAGTTTAATGATCTTAAGATCCTGAAGAATGAGAACACTCCTAATAACTACCAGCTGCAATTAGAGTTAGAGGATGATCATGACAATAATGATGATAGAGCAGTATTCGATTATTCATGGTTCTCTATTGAGAGCAGCTGCAATAATTTGATAAGCCCACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.8

Weight (kDa)

4.88

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 2 cut(s) 6, 19
AcuI CTGAAG 1 cut(s) 188
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 11, 25
AluBI AGCT 3 cut(s) 56, 199, 282
AluI AGCT 3 cut(s) 56, 199, 282
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 199, 279, 282
ApoI RAATTY 2 cut(s) 6, 19
BalI TGGCCA 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 3 cut(s) 186, 269, 291
BclI TGATCA 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 51
BfrI CTTAAG 1 cut(s) 158
BisI GCNGC 3 cut(s) 200, 280, 283
BlsI GCNGC 3 cut(s) 201, 281, 284
Bpu10I CCTNAGC 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 50, 74
BseGI GGATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 53
BseXI GCAGC 3 cut(s) 186, 269, 291
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 3 cut(s) 154, 162, 220
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 223
BspPI GGATC 1 cut(s) 157
BspTI CTTAAG 1 cut(s) 158
BssMI GATC 3 cut(s) 154, 162, 220
BstAFI CTTAAG 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 39, 99
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 3 cut(s) 157, 165, 223
BstMBI GATC 3 cut(s) 154, 162, 220
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 3 cut(s) 186, 269, 291
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 59
CciI TCATGA 1 cut(s) 223
CviAII CATG 2 cut(s) 224, 261
CviJI RGCY 7 cut(s) 56, 68, 97, 143, 199, 282, 300
CviKI_1 RGCY 7 cut(s) 56, 68, 97, 143, 199, 282, 300
DdeI CTNAG 2 cut(s) 39, 99
DpnI GATC 3 cut(s) 156, 164, 222
DpnII GATC 3 cut(s) 154, 162, 220
EaeI YGGCCR 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 188
FaeI CATG 2 cut(s) 227, 264
FaiI YATR 5 cut(s) 105, 129, 140, 225, 262
FatI CATG 2 cut(s) 223, 260
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 200, 280, 283
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 200, 280, 283
GluI GCNGC 3 cut(s) 200, 280, 283
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 2 cut(s) 227, 264
HinfI GANTC 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 109
Hpy188III TCNNGA 4 cut(s) 11, 91, 166, 224
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 72, 202, 285
HpyF3I CTNAG 2 cut(s) 39, 99
Hsp92II CATG 2 cut(s) 227, 264
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 154, 162, 220
LpnPI CCDG 5 cut(s) 26, 82, 135, 179, 209
Lsp1109I GCAGC 3 cut(s) 186, 269, 291
MalI GATC 3 cut(s) 156, 164, 222
MboI GATC 3 cut(s) 154, 162, 220
MboII GAAGA 2 cut(s) 57, 181
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 4 cut(s) 6, 19, 203, 289
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 1 cut(s) 208
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 2 cut(s) 150, 159
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 2 cut(s) 199, 282
MspCI CTTAAG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 40
NdeII GATC 3 cut(s) 154, 162, 220
NlaIII CATG 2 cut(s) 227, 264
PagI TCATGA 1 cut(s) 223
PctI GAATGC 1 cut(s) 40
PkrI GCNGC 3 cut(s) 201, 281, 284
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 162
PvuII CAGCTG 2 cut(s) 199, 282
SaqAI TTAA 2 cut(s) 150, 159
SatI GCNGC 3 cut(s) 200, 280, 283
Sau3AI GATC 3 cut(s) 154, 162, 220
SchI GAGTC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 88
SetI ASST 3 cut(s) 58, 201, 284
SfcI CTRYAG 1 cut(s) 51
SmlI CTYRAG 3 cut(s) 29, 89, 158
SmoI CTYRAG 3 cut(s) 29, 89, 158
Sse9I AATT 4 cut(s) 6, 19, 203, 289
SspI AATATT 1 cut(s) 136
TaqI TCGA 1 cut(s) 252
TasI AATT 4 cut(s) 6, 19, 203, 289
Tru1I TTAA 2 cut(s) 150, 159
Tru9I TTAA 2 cut(s) 150, 159
TscAI CASTG 1 cut(s) 88
TseI GCWGC 3 cut(s) 199, 279, 282
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 158
XapI RAATTY 2 cut(s) 6, 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.