Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000014.1

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

198453 .. 199121

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ctgccacaaaccgtaagcgccagaccaccgcctgcaatagaccaccgctggcatcggaactccacagtctaccttagatcgcccctgcctgcatcgatctcccatctgacgcccatcacaacttcaaccccttcgccaatcccatttattcccgtagctccgacgatgacttcttctccgatgcagcctccaattccaacagtgacgtcagctgcttcgccaccgatctcttcgaccatcgcacctcctccgatcatccccccagtgactgtgtcctcgtctcaggatctaccaaaacccacccaaccccaaagcaccaaagtcttatctcgtgatctcaaagatgattttgatgagcaagaggaggtgctgagacaatttgatttgaacacggcgtatgggccatgttttgggatcaccagattcgaacggtgggagcgtgcctgcaagctggggatggatccatatcgatcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

159

Amino Acids

17.45

Weight (kDa)

8.02

Isoelectric Point (pI)

78.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	115 - 155	3.4e-14	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	69
AciI	CCGC	2 cut(s)	29, 46
AclWI	GGATC	4 cut(s)	294, 422, 455, 468
AcyI	GRCGYC	2 cut(s)	110, 206
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	126, 388
AluBI	AGCT	3 cut(s)	158, 212, 451
AluI	AGCT	3 cut(s)	158, 212, 451
Alw26I	GTCTC	2 cut(s)	285, 367
AlwI	GGATC	4 cut(s)	294, 422, 455, 468
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	184, 212
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	409
AsuII	TTCGAA	1 cut(s)	426
BamHI	GGATCC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	196, 199
BccI	CCATC	4 cut(s)	111, 122, 245, 451
BceAI	ACGGC	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	285, 367
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	2 cut(s)	185, 213
BlsI	GCNGC	2 cut(s)	186, 214
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	3 cut(s)	61, 101, 171
BmuI	ACTGGG	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	426
Bsa29I	ATCGAT	2 cut(s)	95, 469
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	2 cut(s)	110, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	465
BseCI	ATCGAT	2 cut(s)	95, 469
BseGI	GGATG	2 cut(s)	255, 462
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	296, 362
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	237, 377
BseXI	GCAGC	2 cut(s)	196, 199
BseYI	CCCAGC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	403
BshVI	ATCGAT	2 cut(s)	95, 469
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	285, 367
BsmBI	CGTCTC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	426
Bsp143I	GATC	9 cut(s)	77, 96, 225, 252, 286, 334, 414, 460, 470
BspACI	CCGC	2 cut(s)	29, 46
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	2 cut(s)	295, 363
BspDI	ATCGAT	2 cut(s)	95, 469
BspLI	GGNNCC	1 cut(s)	462
BspPI	GGATC	4 cut(s)	294, 422, 455, 468
BspT104I	TTCGAA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	263
BssMI	GATC	9 cut(s)	77, 96, 225, 252, 286, 334, 414, 460, 470
BssNI	GRCGYC	2 cut(s)	110, 206
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	5 cut(s)	13, 67, 202, 271, 432
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	2 cut(s)	110, 206
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	6 cut(s)	33, 50, 90, 441, 445, 449
BstDEI	CTNAG	3 cut(s)	74, 282, 371
BstF5I	GGATG	2 cut(s)	255, 462
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	9 cut(s)	80, 99, 228, 255, 289, 337, 417, 463, 473
BstMAI	GTCTC	2 cut(s)	285, 367
BstMBI	GATC	9 cut(s)	77, 96, 225, 252, 286, 334, 414, 460, 470
BstV1I	GCAGC	2 cut(s)	196, 199
BstX2I	RGATCY	2 cut(s)	286, 460
BstYI	RGATCY	2 cut(s)	286, 460
Bsu15I	ATCGAT	2 cut(s)	95, 469
BsuRI	GGCC	1 cut(s)	403
BsuTUI	ATCGAT	2 cut(s)	95, 469
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	255, 462
BtsIMutI	CAGTG	2 cut(s)	207, 270
Cac8I	GCNNGC	6 cut(s)	33, 50, 90, 441, 445, 449
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	401
ClaI	ATCGAT	2 cut(s)	95, 469
CseI	GACGC	1 cut(s)	118
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	5 cut(s)	158, 187, 212, 403, 451
CviKI_1	RGCY	5 cut(s)	158, 187, 212, 403, 451
DdeI	CTNAG	3 cut(s)	74, 282, 371
DpnI	GATC	9 cut(s)	79, 98, 227, 254, 288, 336, 416, 462, 472
DpnII	GATC	9 cut(s)	77, 96, 225, 252, 286, 334, 414, 460, 470
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	1 cut(s)	408
FaiI	YATR	3 cut(s)	399, 406, 466
FatI	CATG	1 cut(s)	404
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	185, 213
FokI	GGATG	2 cut(s)	242, 469
Fsp4HI	GCNGC	2 cut(s)	185, 213
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	2 cut(s)	185, 213
GsaI	CCCAGC	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	403
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	2 cut(s)	110, 206
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	423
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	5 cut(s)	57, 108, 162, 180, 252
Hpy188III	TCNNGA	3 cut(s)	284, 332, 477
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	5 cut(s)	13, 67, 202, 271, 432
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	35, 92, 184, 447
HpyF3I	CTNAG	3 cut(s)	74, 282, 371
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	2 cut(s)	110, 206
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	9 cut(s)	77, 96, 225, 252, 286, 334, 414, 460, 470
LmnI	GCTCC	2 cut(s)	163, 436
Lsp1109I	GCAGC	2 cut(s)	196, 199
LweI	GCATC	3 cut(s)	61, 101, 171
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	202, 265
MalI	GATC	9 cut(s)	79, 98, 227, 254, 288, 336, 416, 462, 472
MboI	GATC	9 cut(s)	77, 96, 225, 252, 286, 334, 414, 460, 470
MboII	GAAGA	3 cut(s)	165, 222, 465
MflI	RGATCY	2 cut(s)	286, 460
MluCI	AATT	2 cut(s)	192, 377
MmeI	TCCRAC	2 cut(s)	185, 221
MnlI	CCTC	6 cut(s)	198, 255, 258, 286, 355, 358
MspA1I	CMGCKG	2 cut(s)	48, 212
NdeII	GATC	9 cut(s)	77, 96, 225, 252, 286, 334, 414, 460, 470
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	202, 265
NspV	TTCGAA	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	423
PflFI	GACNNNGTC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	186, 214
PspFI	CCCAGC	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	286, 460
PsyI	GACNNNGTC	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	212
SatI	GCNGC	2 cut(s)	185, 213
Sau3AI	GATC	9 cut(s)	77, 96, 225, 252, 286, 334, 414, 460, 470
Sau96I	GGNCC	1 cut(s)	401
SetI	ASST	7 cut(s)	75, 160, 209, 214, 247, 369, 453
SfaNI	GCATC	3 cut(s)	61, 101, 171
SfuI	TTCGAA	1 cut(s)	426
Sse9I	AATT	2 cut(s)	192, 377
SsiI	CCGC	2 cut(s)	29, 46
TaaI	ACNGT	5 cut(s)	13, 67, 202, 271, 432
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	4 cut(s)	95, 233, 426, 469
TasI	AATT	2 cut(s)	192, 377
TfiI	GAWTC	1 cut(s)	423
TscAI	CASTG	2 cut(s)	207, 270
TseFI	GTSAC	2 cut(s)	202, 265
TseI	GCWGC	2 cut(s)	184, 212
Tsp45I	GTSAC	2 cut(s)	202, 265
TspRI	CASTG	2 cut(s)	207, 270
Tth111I	GACNNNGTC	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	69
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.