Rmu_sc0000072.1_g000004

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000072.1
OG0009391
Physical Location & Seq
Reverse (-)
12690 .. 14114
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
atggtttttcatggcactgaatctttcagtgatgatgatggacctcttgttcttgactattacaaagaaaaatgccctttgttggaagagattgtgaggcacaatgttgaagttgcagtttttaaggatcctcggatggctgcttctctccttcgcttgcattttcatgattgttttgtcatgggttgcgatgcatctgttcttttagatagctttggaggcatcaccagtgaaaagcaagcaggccccaacctaaattctttacgaggatttgaggtcatcgatcagatcaaatacctcctggaagaggcttgtccaagaacagtatcatgtgctgatattctagcagtggctgctcgtgattctgttgcatcgagaggagggcctagctgggatgtgtggctaggcaggagagactctctacaagcaagcttcagtggtgccaatcagttcatccccgctccaaattcctctctacaaactctcatttccaatttcaaacaacagggacttgatatcggagacttggttgccttatcaggtagccacacaattggaaaggcaagatgtttaaacttcaggcagagggtctatgatgtgaacttcagaggacagtatgaaatatacgataagtacaggagatatacttccttccgaagaatcttacagtccatatgccccaaatcagggaggaacaatgatttagcacctcttgattttatgacaccagcccgatttgacaatcactattatgtcaacctactccaaggaaaaggtttgctagtttctgataatgtattggtcacgcaagatcatgaaggggagatcctaaagcaggtgtgggcttatgccactgatgagaaacttttctttgctgcatttgcaaactctatggtgaagatgggaaacatcaatccgatcaccggaaatcaaggagaaatcaggaagaattgtaggttcgtcaacacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

323

Amino Acids

36.26

Weight (kDa)

6.39

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 32 - 281 3.6e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 826
Acc36I ACCTGC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 440
AccBSI CCGCTC 1 cut(s) 461
AciI CCGC 1 cut(s) 459
AclWI GGATC 3 cut(s) 122, 135, 820
AcsI RAATTY 2 cut(s) 256, 466
AcuI CTGAAG 3 cut(s) 418, 562, 589
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 6 cut(s) 82, 307, 686, 687, 835, 923
AgsI TTSAA 2 cut(s) 110, 499
AjnI CCWGG 1 cut(s) 300
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
AluBI AGCT 3 cut(s) 213, 390, 432
AluI AGCT 3 cut(s) 213, 390, 432
Alw26I GTCTC 2 cut(s) 408, 516
AlwI GGATC 3 cut(s) 122, 135, 820
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 2 cut(s) 244, 383
ApeKI GCWGC 3 cut(s) 140, 353, 875
ApoI RAATTY 2 cut(s) 256, 466
Asp700I GAANNNNTTC 1 cut(s) 866
AspS9I GGNCC 3 cut(s) 41, 245, 383
AsuHPI GGTGA 3 cut(s) 217, 907, 913
AvaII GGWCC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 440
BauI CACGAG 1 cut(s) 357
BbvI GCAGC 3 cut(s) 127, 340, 862
BccI CCATC 3 cut(s) 32, 130, 895
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 408, 516
BfaI CTAG 5 cut(s) 344, 387, 404, 782, 970
BfuAI ACCTGC 1 cut(s) 826
BisI GCNGC 3 cut(s) 141, 354, 876
BlsI GCNGC 3 cut(s) 142, 355, 877
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 3 cut(s) 41, 245, 383
BmiI GGNNCC 3 cut(s) 129, 247, 442
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 4 cut(s) 181, 203, 231, 380
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bsa29I ATCGAT 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 131, 766
BsaWI WCCGGW 1 cut(s) 923
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 6 cut(s) 82, 307, 686, 687, 835, 923
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 302
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 131, 766
BseGI GGATG 3 cut(s) 141, 400, 453
BseLI CCNNNNNNNGG 6 cut(s) 82, 307, 686, 687, 835, 923
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 3 cut(s) 127, 340, 862
BseYI CCCAGC 1 cut(s) 390
BshFI GGCC 2 cut(s) 246, 385
BshNI GGYRCC 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 282
BsiSI CCGG 1 cut(s) 924
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 6 cut(s) 82, 307, 686, 687, 835, 923
BsmAI GTCTC 2 cut(s) 408, 516
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 2 cut(s) 246, 385
Bsp143I GATC 6 cut(s) 127, 283, 288, 811, 825, 918
BspACI CCGC 1 cut(s) 459
BspANI GGCC 2 cut(s) 246, 385
BspDI ATCGAT 1 cut(s) 282
BspHI TCATGA 2 cut(s) 166, 814
BspLI GGNNCC 3 cut(s) 129, 247, 442
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 3 cut(s) 122, 135, 820
BspT107I GGYRCC 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 461
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 131, 766
BssMI GATC 6 cut(s) 127, 283, 288, 811, 825, 918
BssSI CACGAG 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 766
Bst2BI CACGAG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 325, 615, 669
Bst6I CTCTTC 2 cut(s) 81, 300
BstAPI GCANNNNNTGC 1 cut(s) 353
BstC8I GCNNGC 4 cut(s) 158, 240, 244, 430
BstENI CCTNNNNNAGG 2 cut(s) 305, 833
BstF5I GGATG 3 cut(s) 141, 400, 453
BstKTI GATC 6 cut(s) 130, 286, 291, 814, 828, 921
BstMAI GTCTC 2 cut(s) 408, 516
BstMBI GATC 6 cut(s) 127, 283, 288, 811, 825, 918
BstMWI GCNNNNNNNGC 3 cut(s) 219, 353, 881
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 127, 340, 862
BstX2I RGATCY 2 cut(s) 127, 825
BstXI CCANNNNNNTGG 1 cut(s) 554
BstYI RGATCY 2 cut(s) 127, 825
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 2 cut(s) 246, 385
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 204
BtsCI GGATG 3 cut(s) 141, 400, 453
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 6 cut(s) 15, 34, 235, 354, 442, 852
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 4 cut(s) 158, 240, 244, 430
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 2 cut(s) 166, 814
Cfr13I GGNCC 3 cut(s) 41, 245, 383
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 1 cut(s) 634
CviAII CATG 5 cut(s) 11, 167, 181, 330, 815
CviQI GTAC 1 cut(s) 634
DpnI GATC 6 cut(s) 129, 285, 290, 813, 827, 920
DpnII GATC 6 cut(s) 127, 283, 288, 811, 825, 918
DraI TTTAAA 1 cut(s) 573
Eam1104I CTCTTC 2 cut(s) 81, 300
EarI CTCTTC 2 cut(s) 81, 300
Eco130I CCWWGG 1 cut(s) 766
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 418, 562, 589
EcoNI CCTNNNNNAGG 2 cut(s) 305, 833
EcoO109I RGGNCCY 2 cut(s) 245, 383
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 766
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 5 cut(s) 14, 170, 184, 333, 818
FaqI GGGAC 1 cut(s) 522
FatI CATG 5 cut(s) 10, 166, 180, 329, 814
FauI CCCGC 1 cut(s) 466
FauNDI CATATG 1 cut(s) 674
Fnu4HI GCNGC 3 cut(s) 141, 354, 876
FokI GGATG 3 cut(s) 148, 407, 440
Fsp4HI GCNGC 3 cut(s) 141, 354, 876
FspBI CTAG 5 cut(s) 344, 387, 404, 782, 970
GluI GCNGC 3 cut(s) 141, 354, 876
GsaI CCCAGC 1 cut(s) 394
HaeIII GGCC 2 cut(s) 246, 385
HapII CCGG 1 cut(s) 924
Hin1II CATG 5 cut(s) 14, 170, 184, 333, 818
HincII GTYRAC 2 cut(s) 757, 964
HindII GTYRAC 2 cut(s) 757, 964
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 4 cut(s) 20, 362, 416, 660
HpaII CCGG 1 cut(s) 924
HphI GGTGA 3 cut(s) 217, 907, 913
Hpy166II GTNNAC 3 cut(s) 601, 757, 964
Hpy188I TCNGA 7 cut(s) 135, 288, 521, 608, 656, 790, 918
Hpy188III TCNNGA 7 cut(s) 53, 167, 359, 375, 713, 815, 943
Hpy8I GTNNAC 3 cut(s) 601, 757, 964
HpyAV CCTTC 3 cut(s) 161, 661, 812
HpyCH4III ACNGT 3 cut(s) 325, 615, 669
HpyCH4V TGCA 6 cut(s) 116, 160, 194, 371, 878, 884
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 353, 881
Hsp92II CATG 5 cut(s) 14, 170, 184, 333, 818
Kzo9I GATC 6 cut(s) 127, 283, 288, 811, 825, 918
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 3 cut(s) 127, 340, 862
LweI GCATC 4 cut(s) 181, 203, 231, 380
MaeI CTAG 5 cut(s) 344, 387, 404, 782, 970
MaeIII GTNAC 1 cut(s) 802
MalI GATC 6 cut(s) 129, 285, 290, 813, 827, 920
MbiI CCGCTC 1 cut(s) 461
MboI GATC 6 cut(s) 127, 283, 288, 811, 825, 918
MboII GAAGA 5 cut(s) 98, 317, 669, 910, 958
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 2 cut(s) 127, 825
MluCI AATT 5 cut(s) 256, 466, 493, 552, 949
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 63
Mph1103I ATGCAT 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 866
MseI TTAA 2 cut(s) 123, 572
MslI CAYNNNNRTG 2 cut(s) 165, 750
MspI CCGG 1 cut(s) 924
MspR9I CCNGG 1 cut(s) 302
MssI GTTTAAAC 1 cut(s) 573
MunI CAATTG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 219, 353, 881
NdeI CATATG 1 cut(s) 674
NdeII GATC 6 cut(s) 127, 283, 288, 811, 825, 918
NlaIII CATG 5 cut(s) 14, 170, 184, 333, 818
NlaIV GGNNCC 3 cut(s) 129, 247, 442
NmuCI GTSAC 1 cut(s) 802
NsiI ATGCAT 1 cut(s) 196
PagI TCATGA 2 cut(s) 166, 814
PaqCI CACCTGC 1 cut(s) 826
PdmI GAANNNNTTC 1 cut(s) 866
PfeI GAWTC 3 cut(s) 20, 362, 660
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 3 cut(s) 142, 355, 877
PleI GAGTC 1 cut(s) 410
PmeI GTTTAAAC 1 cut(s) 573
PpsI GAGTC 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 129, 247, 442
PspPI GGNCC 3 cut(s) 41, 245, 383
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 2 cut(s) 127, 825
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
RseI CAYNNNNRTG 2 cut(s) 165, 750
SaqAI TTAA 2 cut(s) 123, 572
SatI GCNGC 3 cut(s) 141, 354, 876
Sau3AI GATC 6 cut(s) 127, 283, 288, 811, 825, 918
Sau96I GGNCC 3 cut(s) 41, 245, 383
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 302
SfaNI GCATC 4 cut(s) 181, 203, 231, 380
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 165, 750
Sse9I AATT 5 cut(s) 256, 466, 493, 552, 949
SsiI CCGC 1 cut(s) 459
SspMI CTAG 5 cut(s) 344, 387, 404, 782, 970
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 3 cut(s) 325, 615, 669
TaqI TCGA 2 cut(s) 282, 374
TasI AATT 5 cut(s) 256, 466, 493, 552, 949
TatI WGTACW 1 cut(s) 633
TfiI GAWTC 3 cut(s) 20, 362, 660
Tru1I TTAA 2 cut(s) 123, 572
Tru9I TTAA 2 cut(s) 123, 572
TscAI CASTG 6 cut(s) 22, 34, 235, 354, 442, 859
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 3 cut(s) 140, 353, 875
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 4 cut(s) 155, 442, 633, 831
TspRI CASTG 6 cut(s) 22, 34, 235, 354, 442, 859
VpaK11BI GGWCC 1 cut(s) 41
XagI CCTNNNNNAGG 2 cut(s) 305, 833
XapI RAATTY 2 cut(s) 256, 466
XmnI GAANNNNTTC 1 cut(s) 866
XspI CTAG 5 cut(s) 344, 387, 404, 782, 970
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.