Rmu_sc0000202.1_g000006

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000202.1
OG0010467
Physical Location & Seq
Forward (+)
11758 .. 14412
2655 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
atgcacaaaactaaacacttgtttagtggaccagaagtggagggagtaacgtgcggcagagcttggtccgcaatgcaaagctcactgtcgttcctctctgtggcgaagcccgtctcagtctcatctccggttcgcatcaactgttcattgttcaccgccccaagcaccaccgaccccaattcaatggcagcttccggtcccaagtgggcccagaagaccataactctgcctccccagagaagaggctgccacctcatcacccctaagataatgaaggaaatcgggcaggacttgtctggattcaactgcggacttgctcacctcttcttgcaacacacaagtgcttctcttactatcaatgagaactatgactctgatgttcgtaccgacacagagacattcctcaatagggtagttcctgagggggcatctgcaccgtggagacatacccttgaaggcccagatgacatgccggcacacattaaatcatcaatgtttggctgccaactgtcgattccaatcacaaatgggaagcttaacatgggaacttggcagggaatatggttgtgtgagcatcgtgacgaacccaccgctcggaaagttgtggtcacccttaatggaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

208

Amino Acids

22.71

Weight (kDa)

8.25

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 86 - 204 3.7e-41 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 593
AciI CCGC 5 cut(s) 54, 69, 156, 309, 591
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 3 cut(s) 100, 409, 594
AgsI TTSAA 3 cut(s) 183, 304, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 4 cut(s) 62, 81, 191, 535
AluI AGCT 4 cut(s) 62, 81, 191, 535
Alw26I GTCTC 4 cut(s) 118, 124, 389, 436
AoxI GGCC 2 cut(s) 207, 457
ApaI GGGCCC 1 cut(s) 211
ApeKI GCWGC 3 cut(s) 188, 246, 501
AspS9I GGNCC 6 cut(s) 29, 66, 197, 207, 208, 458
AsuHPI GGTGA 4 cut(s) 145, 250, 311, 601
AvaII GGWCC 3 cut(s) 29, 66, 197
AxyI CCTNAGG 1 cut(s) 420
BaeGI GKGCMC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 3 cut(s) 200, 233, 488
BcoDI GTCTC 4 cut(s) 118, 124, 389, 436
BisI GCNGC 4 cut(s) 55, 189, 247, 502
BlsI GCNGC 4 cut(s) 56, 190, 248, 503
Bme18I GGWCC 3 cut(s) 29, 66, 197
BmgT120I GGNCC 6 cut(s) 29, 66, 197, 207, 208, 458
BmiI GGNNCC 2 cut(s) 199, 209
BmsI GCATC 3 cut(s) 144, 437, 583
BpiI GAAGAC 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 437
BsaWI WCCGGW 2 cut(s) 127, 194
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 409, 594
Bse118I RCCGGY 1 cut(s) 472
Bse21I CCTNAGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 518
BseDI CCNNGG 1 cut(s) 437
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 3 cut(s) 100, 409, 594
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 129, 411
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 3 cut(s) 200, 233, 488
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 2 cut(s) 209, 459
BsiSI CCGG 3 cut(s) 128, 195, 473
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 100, 409, 594
BsmAI GTCTC 4 cut(s) 118, 124, 389, 436
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 2 cut(s) 209, 459
Bsp120I GGGCCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 211
BspACI CCGC 5 cut(s) 54, 69, 156, 309, 591
BspANI GGCC 2 cut(s) 209, 459
BspCNI CTCAG 2 cut(s) 128, 412
BspLI GGNNCC 2 cut(s) 199, 209
BsrBI CCGCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 472
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 437
Bst4CI ACNGT 4 cut(s) 87, 143, 438, 510
Bst6I CTCTTC 2 cut(s) 235, 329
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 3 cut(s) 115, 264, 420
BstDSI CCRYGG 1 cut(s) 437
BstEII GGTNACC 1 cut(s) 607
BstMAI GTCTC 4 cut(s) 118, 124, 389, 436
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 472
BstPI GGTNACC 1 cut(s) 607
BstSLI GKGCMC 1 cut(s) 211
BstV1I GCAGC 3 cut(s) 200, 233, 488
BstV2I GAAGAC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 420
BsuRI GGCC 2 cut(s) 209, 459
BtgI CCRYGG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 6 cut(s) 29, 66, 197, 207, 208, 458
Csp6I GTAC 1 cut(s) 384
CviAII CATG 2 cut(s) 469, 541
CviJI RGCY 9 cut(s) 62, 81, 109, 191, 209, 246, 459, 501, 535
CviKI_1 RGCY 9 cut(s) 62, 81, 109, 191, 209, 246, 459, 501, 535
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 3 cut(s) 115, 264, 420
Eam1104I CTCTTC 2 cut(s) 235, 329
EarI CTCTTC 2 cut(s) 235, 329
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 3 cut(s) 29, 66, 197
Eco81I CCTNAGG 1 cut(s) 420
Eco91I GGTNACC 1 cut(s) 607
EcoO65I GGTNACC 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 2 cut(s) 472, 544
FaiI YATR 7 cut(s) 221, 369, 447, 470, 542, 562, 625
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 468, 540
Fnu4HI GCNGC 4 cut(s) 55, 189, 247, 502
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 4 cut(s) 55, 189, 247, 502
GluI GCNGC 4 cut(s) 55, 189, 247, 502
HaeIII GGCC 2 cut(s) 209, 459
HapII CCGG 3 cut(s) 128, 195, 473
Hin1II CATG 2 cut(s) 472, 544
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 3 cut(s) 300, 371, 514
HpaII CCGG 3 cut(s) 128, 195, 473
HphI GGTGA 4 cut(s) 145, 250, 311, 601
Hpy166II GTNNAC 2 cut(s) 29, 153
Hpy188I TCNGA 2 cut(s) 376, 597
Hpy188III TCNNGA 3 cut(s) 297, 419, 578
Hpy8I GTNNAC 2 cut(s) 29, 153
HpyAV CCTTC 2 cut(s) 268, 449
HpyCH4III ACNGT 4 cut(s) 87, 143, 438, 510
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 4 cut(s) 4, 76, 331, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 115, 264, 420
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 2 cut(s) 472, 544
KroI GCCGGC 1 cut(s) 472
KroNI GCCGGC 1 cut(s) 474
Lsp1109I GCAGC 3 cut(s) 200, 233, 488
LweI GCATC 3 cut(s) 144, 437, 583
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 3 cut(s) 46, 578, 607
MbiI CCGCTC 1 cut(s) 593
MboII GAAGA 3 cut(s) 226, 252, 316
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 178
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 8 cut(s) 34, 104, 236, 240, 263, 332, 413, 415
MroNI GCCGGC 1 cut(s) 472
MseI TTAA 3 cut(s) 483, 537, 615
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 3 cut(s) 128, 195, 473
MwoI GCNNNNNNNGC 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 474
NgoMIV GCCGGC 1 cut(s) 472
NlaIII CATG 2 cut(s) 472, 544
NlaIV GGNNCC 2 cut(s) 199, 209
NmuCI GTSAC 2 cut(s) 578, 607
NspI RCATGY 1 cut(s) 472
OliI CACNNNNGTG 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 474
PfeI GAWTC 2 cut(s) 300, 514
PkrI GCNGC 4 cut(s) 56, 190, 248, 503
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PspEI GGTNACC 1 cut(s) 607
PspN4I GGNNCC 2 cut(s) 199, 209
PspOMI GGGCCC 1 cut(s) 207
PspPI GGNCC 6 cut(s) 29, 66, 197, 207, 208, 458
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 3 cut(s) 483, 537, 615
SatI GCNGC 4 cut(s) 55, 189, 247, 502
Sau96I GGNCC 6 cut(s) 29, 66, 197, 207, 208, 458
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 1 cut(s) 211
SetI ASST 7 cut(s) 53, 64, 83, 193, 255, 324, 537
SfaNI GCATC 3 cut(s) 144, 437, 583
SinI GGWCC 3 cut(s) 29, 66, 197
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 1 cut(s) 178
SsiI CCGC 5 cut(s) 54, 69, 156, 309, 591
TaaI ACNGT 4 cut(s) 87, 143, 438, 510
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 512
TasI AATT 1 cut(s) 178
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 300, 514
Tru1I TTAA 3 cut(s) 483, 537, 615
Tru9I TTAA 3 cut(s) 483, 537, 615
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 2 cut(s) 578, 607
TseI GCWGC 3 cut(s) 188, 246, 501
Tsp45I GTSAC 2 cut(s) 578, 607
TspDTI ATGAA 2 cut(s) 135, 287
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 3 cut(s) 29, 66, 197
XceI RCATGY 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.