Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000239.1

Orthogroup ID

OG0011519

Physical Location & Seq

Genomic Coordinates Reverse (-)

580054 .. 580866

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgggttccatgcttgggctcttagggatctttctcctggatgggctactcccgtccatggcttacaacgttcatcgctatagctttatccttaaggagaccaatttcacgagactatgtaccacaaagccaatgctgactgtaaatgggcagttcccaggtccaaccattactgttcgcaaaggagatagagcttttgttaatgtccacaacaaaggcaaatatggtgtcaccagtaccgtcatgaacgaagaaatgtttttcacaattgccggtcacaacttcagggtggtggctcaagatggtgcatacatcaagcccatactgactagttacataatgattactccagctagcgacaagctagtgtacagatgggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

127

Amino Acids

14.26

Weight (kDa)

9.67

Isoelectric Point (pI)

18.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	32 - 78	3e-10	Multicopper oxidase
Cu-oxidase	PF00394	46 - 119	5.6e-08	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05971 FvH4_5g36542
rosa_multiflora	Rmu_sc0000239.1_g000102 Rmu_sc0001625.1_g000001 Rmu_sc0002231.1_g000005 Rmu_sc0002895.1_g000015 Rmu_sc0006475.1_g000013 Rmu_sc0014815.1_g000005
rosa_roxburghii	Rroxscaffold_7G00195640
rosa_rugosa	Rorug04G0231200 Rorug06G0166800
rosa_samantha	Rh2AG509200 Rh2AG509500 Rh2BG520600 Rh2BG520700 Rh4BG442100 Rh5BG389700 Rh6CG192000 Rh6CG198800
rosa_wichuraiana	Rw6G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	69
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	268
AfaI	GTAC	3 cut(s)	121, 238, 371
AfiI	CCNNNNNNNGG	2 cut(s)	15, 58
AflII	CTTAAG	1 cut(s)	92
AhlI	ACTAGT	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	36, 157
AluBI	AGCT	4 cut(s)	84, 194, 353, 364
AluI	AGCT	4 cut(s)	84, 194, 353, 364
Alw26I	GTCTC	2 cut(s)	92, 106
AlwI	GGATC	1 cut(s)	35
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	223
AsuNHI	GCTAGC	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	21
BauI	CACGAG	1 cut(s)	109
BccI	CCATC	3 cut(s)	35, 296, 369
BciT130I	CCWGG	2 cut(s)	38, 159
BcoDI	GTCTC	2 cut(s)	92, 106
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	3 cut(s)	330, 354, 365
BfmI	CTRYAG	1 cut(s)	79
BfrI	CTTAAG	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	38, 159
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	38, 159
BmtI	GCTAGC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	57, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 58
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	38, 159
BseDI	CCNNGG	2 cut(s)	57, 157
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	15, 58
BseNI	ACTGG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	15, 58
BsmAI	GTCTC	2 cut(s)	92, 106
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	27
Bsp19I	CCATGG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	7
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	57, 157
BssMI	GATC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	57
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	38, 159
Bst4CI	ACNGT	3 cut(s)	142, 175, 241
BstAFI	CTTAAG	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	2 cut(s)	92, 106
BstMBI	GATC	1 cut(s)	27
BstNI	CCWGG	2 cut(s)	38, 159
BstSCI	CCNGG	2 cut(s)	36, 157
BstSFI	CTRYAG	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	120, 237, 370
CviAII	CATG	3 cut(s)	10, 58, 244
CviQI	GTAC	3 cut(s)	120, 237, 370
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	36, 157
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	13, 61, 247
FatI	CATG	3 cut(s)	9, 57, 243
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	21
FspBI	CTAG	3 cut(s)	330, 354, 365
GsuI	CTGGAG	1 cut(s)	333
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	3 cut(s)	13, 61, 247
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	208, 370
Hpy188III	TCNNGA	3 cut(s)	109, 244, 299
Hpy8I	GTNNAC	2 cut(s)	208, 370
HpyCH4III	ACNGT	3 cut(s)	142, 175, 241
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	13, 61, 247
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	8 cut(s)	23, 50, 144, 171, 247, 271, 286, 363
MaeI	CTAG	3 cut(s)	330, 354, 365
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	229, 275, 332
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	263
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	103, 267
MmeI	TCCRAC	1 cut(s)	188
MseI	TTAA	2 cut(s)	93, 201
MspCI	CTTAAG	1 cut(s)	92
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	38, 159
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	38, 159
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	27
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	13, 61, 247
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	2 cut(s)	229, 275
PagI	TCATGA	1 cut(s)	243
PfoI	TCCNGGA	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	36, 157
PspGI	CCWGG	2 cut(s)	36, 157
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	3 cut(s)	121, 238, 371
RsaNI	GTAC	3 cut(s)	120, 237, 370
SaqAI	TTAA	2 cut(s)	93, 201
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	38, 159
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	6 cut(s)	72, 86, 163, 196, 355, 366
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	92, 297
SmoI	CTYRAG	2 cut(s)	92, 297
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	2 cut(s)	103, 267
SspMI	CTAG	3 cut(s)	330, 354, 365
StyD4I	CCNGG	2 cut(s)	36, 157
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	3 cut(s)	142, 175, 241
TaiI	ACGT	1 cut(s)	72
TasI	AATT	2 cut(s)	103, 267
TatI	WGTACW	1 cut(s)	369
Tru1I	TTAA	2 cut(s)	93, 201
Tru9I	TTAA	2 cut(s)	93, 201
TseFI	GTSAC	2 cut(s)	229, 275
Tsp45I	GTSAC	2 cut(s)	229, 275
TspDTI	ATGAA	2 cut(s)	62, 260
Vha464I	CTTAAG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	161
XspI	CTAG	3 cut(s)	330, 354, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.