Rmu_sc0000292.1_g000019

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000292.1
OG0008003
Physical Location & Seq
Reverse (-)
114790 .. 119687
4898 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1164 bp
atgaacaagaagatgcagtcgccaccaacaacaccatcgaaacgcaataccagtccttcccttttcttccggtgcttagacctcgtccttccatggctaaccccacaagagctggccatggcatctctgacctgcaccaccctccgcaacctctccaagtccatcactttccgccgcgcctccgacgcttccagatccctcgagccccatcccatcccattccataactcactcgatcaacacccttatgcctacttcatctacgccccttcctctctaacccaatcatcttcttcttcttcttcttcactgcttcgccaaccgtggggttccagtcaccacgagtcagactcggacaccagaactgaaacgtcgtcgttgcgttttgttgacgaatcgggaaactgtgcgtcgtctgggtgtgaatgtgaagagacatgtgaggatgggaaagaggggtgtccgtgtgttgtcggctttgctggcttcgacggcgtcgttttcgagtgtggacccagttgtggatgccggttaagttgtgggaatcggttgactcagaccgggattcaggttaagttgaagattgtgagggacagaagaaaagggtggagtttgtttgccgaccagttcatccccaagggtcggtttgtgtgcgagtatgcaggtgaactattgacaacaaaggaatcaagactgcggcaagaaatttatgatgaactttcgtcgggtggtcatttctcccctgctcttttggttgtgagggagcatcttccatccaaaaaggcatgtctgagactcaatattgatgccacaagaatcggaaatgtctcaaggttcatcaaccattcttgcgacggaggtaatttgtccacagctcttgttagaagctcaggggctttgcttccacgtctttgcttttttgcttcagatgacataaaagtggatgaagagcttacatttagctatggtgaaactaggctgaactccaagggtgtcattatccctaaactggttccccgtgaagcgaacaaagcagctcacatagcagcttcgcttgcctatcaatcagtgggtcttcgtagatgggctgatcagccaccaccttcccttgcaatagtgctccaaaacgttggcctcccttgcccccatgttgaggagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Pre-SET SET

Protein Analysis

387

Amino Acids

42.52

Weight (kDa)

8.09

Isoelectric Point (pI)

65.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 202 - 323 3.6e-20 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 653
Acc36I ACCTGC 2 cut(s) 140, 653
AccII CGCG 1 cut(s) 177
AciI CCGC 4 cut(s) 145, 172, 175, 697
AclI AACGTT 1 cut(s) 1128
AclWI GGATC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 705
AcuI CTGAAG 1 cut(s) 909
AcyI GRCGYC 1 cut(s) 495
AfiI CCNNNNNNNGG 5 cut(s) 325, 521, 642, 1009, 1153
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 1 cut(s) 580
AjiI CACGTC 1 cut(s) 908
AluBI AGCT 7 cut(s) 112, 875, 888, 952, 963, 1037, 1049
AluI AGCT 7 cut(s) 112, 875, 888, 952, 963, 1037, 1049
Alw21I GWGCWC 1 cut(s) 1122
Alw26I GTCTC 3 cut(s) 428, 787, 832
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 2 cut(s) 114, 1132
ApeKI GCWGC 2 cut(s) 1034, 1046
ApoI RAATTY 1 cut(s) 705
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 3 cut(s) 329, 677, 980
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 512
BalI TGGCCA 1 cut(s) 116
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 1067
Bbv12I GWGCWC 1 cut(s) 1122
BbvI GCAGC 2 cut(s) 1046, 1058
BccI CCATC 7 cut(s) 43, 170, 216, 221, 440, 781, 1077
BceAI ACGGC 1 cut(s) 508
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 3 cut(s) 428, 787, 832
BfaI CTAG 1 cut(s) 975
BfuAI ACCTGC 2 cut(s) 140, 653
BisI GCNGC 4 cut(s) 175, 698, 1035, 1047
BlsI GCNGC 4 cut(s) 176, 699, 1036, 1048
Bme1390I CCNGG 1 cut(s) 562
Bme18I GGWCC 1 cut(s) 512
BmeT110I CYCGRG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 908
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 3 cut(s) 331, 514, 1014
BmrFI CCNGG 1 cut(s) 562
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 5 cut(s) 3, 131, 515, 775, 796
BmuI ACTGGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 1067
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu10I CCTNAGC 1 cut(s) 889
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 1 cut(s) 562
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 5 cut(s) 92, 117, 323, 636, 987
BsaWI WCCGGW 1 cut(s) 69
Bsc4I CCNNNNNNNGG 5 cut(s) 325, 521, 642, 1009, 1153
Bse118I RCCGGY 1 cut(s) 528
Bse1I ACTGG 5 cut(s) 51, 333, 516, 625, 1014
BseDI CCNNGG 5 cut(s) 92, 117, 323, 636, 987
BseGI GGATG 7 cut(s) 208, 213, 451, 530, 630, 773, 949
BseLI CCNNNNNNNGG 5 cut(s) 325, 521, 642, 1009, 1153
BseMII CTCAG 3 cut(s) 569, 782, 903
BseNI ACTGG 5 cut(s) 51, 333, 516, 625, 1014
BseXI GCAGC 2 cut(s) 1046, 1058
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 116, 1134
BsiHKAI GWGCWC 1 cut(s) 1122
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 3 cut(s) 70, 529, 561
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 5 cut(s) 325, 521, 642, 1009, 1153
BsmAI GTCTC 3 cut(s) 428, 787, 832
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 2 cut(s) 116, 1134
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 207, 1122
Bsp143I GATC 3 cut(s) 194, 235, 1090
Bsp19I CCATGG 2 cut(s) 92, 117
BspACI CCGC 4 cut(s) 145, 172, 175, 697
BspANI GGCC 2 cut(s) 116, 1134
BspCNI CTCAG 3 cut(s) 568, 783, 902
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 331, 514, 1014
BspMI ACCTGC 2 cut(s) 140, 653
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 528
BsrI ACTGG 5 cut(s) 51, 333, 516, 625, 1014
BssAI RCCGGY 1 cut(s) 528
BssECI CCNNGG 5 cut(s) 92, 117, 323, 636, 987
BssMI GATC 3 cut(s) 194, 235, 1090
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 4 cut(s) 92, 117, 636, 987
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 324, 407
Bst6I CTCTTC 2 cut(s) 426, 942
BstACI GRCGYC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 114, 484, 1056
BstDEI CTNAG 4 cut(s) 76, 555, 791, 889
BstDSI CCRYGG 3 cut(s) 92, 117, 323
BstF5I GGATG 7 cut(s) 208, 213, 451, 530, 630, 773, 949
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 3 cut(s) 197, 238, 1093
BstMAI GTCTC 3 cut(s) 428, 787, 832
BstMBI GATC 3 cut(s) 194, 235, 1090
BstMWI GCNNNNNNNGC 7 cut(s) 185, 483, 492, 1031, 1043, 1055, 1140
BstNSI RCATGY 2 cut(s) 441, 789
BstSCI CCNGG 1 cut(s) 560
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 1046, 1058
BstV2I GAAGAC 1 cut(s) 1067
BstX2I RGATCY 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 1130
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 2 cut(s) 116, 1134
BtgI CCRYGG 3 cut(s) 92, 117, 323
BtrI CACGTC 1 cut(s) 908
BtsCI GGATG 7 cut(s) 208, 213, 451, 530, 630, 773, 949
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 308, 1074
BveI ACCTGC 2 cut(s) 140, 653
Cac8I GCNNGC 3 cut(s) 114, 484, 1056
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 528
Cfr13I GGNCC 1 cut(s) 512
CseI GACGC 3 cut(s) 194, 399, 484
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 5 cut(s) 93, 118, 438, 786, 1148
DdeI CTNAG 4 cut(s) 76, 555, 791, 889
DpnI GATC 3 cut(s) 196, 237, 1092
DpnII GATC 3 cut(s) 194, 235, 1090
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 426, 942
EarI CTCTTC 2 cut(s) 426, 942
EciI GGCGGA 1 cut(s) 161
Eco130I CCWWGG 4 cut(s) 92, 117, 636, 987
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 200
EcoT14I CCWWGG 4 cut(s) 92, 117, 636, 987
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 4 cut(s) 92, 117, 636, 987
FaeI CATG 5 cut(s) 96, 121, 441, 789, 1151
FaqI GGGAC 1 cut(s) 605
FatI CATG 5 cut(s) 92, 117, 437, 785, 1147
FbaI TGATCA 1 cut(s) 1090
Fnu4HI GCNGC 4 cut(s) 175, 698, 1035, 1047
FokI GGATG 7 cut(s) 195, 200, 458, 537, 617, 760, 956
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 4 cut(s) 175, 698, 1035, 1047
FspBI CTAG 1 cut(s) 975
GlaI GCGC 1 cut(s) 178
GluI GCNGC 4 cut(s) 175, 698, 1035, 1047
HaeIII GGCC 2 cut(s) 116, 1134
HapII CCGG 3 cut(s) 70, 529, 561
HgaI GACGC 3 cut(s) 194, 399, 484
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 5 cut(s) 96, 121, 441, 789, 1151
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 2 cut(s) 391, 552
HindII GTYRAC 2 cut(s) 391, 552
HinfI GANTC 9 cut(s) 344, 350, 395, 544, 553, 565, 686, 795, 816
HpaII CCGG 3 cut(s) 70, 529, 561
HphI GGTGA 3 cut(s) 329, 677, 980
Hpy166II GTNNAC 5 cut(s) 391, 512, 552, 668, 870
Hpy188I TCNGA 8 cut(s) 129, 184, 349, 355, 558, 792, 821, 928
Hpy188III TCNNGA 3 cut(s) 192, 399, 690
Hpy8I GTNNAC 5 cut(s) 391, 512, 552, 668, 870
Hpy99I CGWCG 8 cut(s) 188, 376, 379, 415, 494, 500, 727, 857
HpyAV CCTTC 4 cut(s) 66, 98, 279, 1113
HpyCH4III ACNGT 2 cut(s) 324, 407
HpyCH4IV ACGT 3 cut(s) 371, 907, 1128
HpyCH4V TGCA 4 cut(s) 16, 135, 662, 1112
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 483, 492, 1031, 1043, 1055, 1140
HpyF3I CTNAG 4 cut(s) 76, 555, 791, 889
HpySE526I ACGT 3 cut(s) 371, 907, 1128
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 5 cut(s) 96, 121, 441, 789, 1151
HspAI GCGC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 1090
Kzo9I GATC 3 cut(s) 194, 235, 1090
LguI GCTCTTC 1 cut(s) 942
LmnI GCTCC 2 cut(s) 763, 1125
Lsp1109I GCAGC 2 cut(s) 1046, 1058
LweI GCATC 5 cut(s) 3, 131, 515, 775, 796
MaeI CTAG 1 cut(s) 975
MaeII ACGT 3 cut(s) 371, 907, 1128
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 196, 237, 1092
MboI GATC 3 cut(s) 194, 235, 1090
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 2 cut(s) 207, 1122
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 2 cut(s) 705, 862
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 4 cut(s) 344, 353, 547, 789
MmeI TCCRAC 1 cut(s) 207
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 2 cut(s) 533, 573
MslI CAYNNNNRTG 2 cut(s) 246, 938
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 3 cut(s) 70, 529, 561
MspR9I CCNGG 1 cut(s) 562
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 7 cut(s) 185, 483, 492, 1031, 1043, 1055, 1140
NciI CCSGG 1 cut(s) 562
NcoI CCATGG 2 cut(s) 92, 117
NdeII GATC 3 cut(s) 194, 235, 1090
NlaIII CATG 5 cut(s) 96, 121, 441, 789, 1151
NlaIV GGNNCC 3 cut(s) 331, 514, 1014
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 2 cut(s) 441, 789
PaeR7I CTCGAG 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 653
PciI ACATGT 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 942
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PfeI GAWTC 5 cut(s) 395, 544, 565, 686, 816
PflFI GACNNNGTC 2 cut(s) 83, 494
PkrI GCNGC 4 cut(s) 176, 699, 1036, 1048
PleI GAGTC 4 cut(s) 344, 352, 547, 789
PpsI GAGTC 4 cut(s) 344, 352, 547, 789
PscI ACATGT 1 cut(s) 437
Psp1406I AACGTT 1 cut(s) 1128
PspN4I GGNNCC 3 cut(s) 331, 514, 1014
PspPI GGNCC 1 cut(s) 512
PspXI VCTCGAGB 1 cut(s) 200
PsuI RGATCY 1 cut(s) 194
PsyI GACNNNGTC 2 cut(s) 83, 494
RseI CAYNNNNRTG 2 cut(s) 246, 938
SapI GCTCTTC 1 cut(s) 942
SaqAI TTAA 2 cut(s) 533, 573
SatI GCNGC 4 cut(s) 175, 698, 1035, 1047
Sau3AI GATC 3 cut(s) 194, 235, 1090
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 4 cut(s) 344, 353, 547, 789
ScrFI CCNGG 1 cut(s) 562
SduI GDGCHC 2 cut(s) 207, 1122
SfaNI GCATC 5 cut(s) 3, 131, 515, 775, 796
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 512
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 246, 938
SmlI CTYRAG 2 cut(s) 200, 829
SmoI CTYRAG 2 cut(s) 200, 829
Sse9I AATT 2 cut(s) 705, 862
SsiI CCGC 4 cut(s) 145, 172, 175, 697
SspI AATATT 1 cut(s) 802
SspMI CTAG 1 cut(s) 975
StyD4I CCNGG 1 cut(s) 560
StyI CCWWGG 4 cut(s) 92, 117, 636, 987
TaaI ACNGT 2 cut(s) 324, 407
TaiI ACGT 3 cut(s) 374, 910, 1131
TaqI TCGA 5 cut(s) 38, 201, 234, 489, 504
TasI AATT 2 cut(s) 705, 862
TauI GCSGC 2 cut(s) 177, 700
TfiI GAWTC 5 cut(s) 395, 544, 565, 686, 816
Tru1I TTAA 2 cut(s) 533, 573
Tru9I TTAA 2 cut(s) 533, 573
TscAI CASTG 2 cut(s) 315, 1074
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 1034, 1046
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 6 cut(s) 17, 247, 619, 729, 826, 960
TspGWI ACGGA 2 cut(s) 453, 870
TspRI CASTG 2 cut(s) 315, 1074
Tth111I GACNNNGTC 2 cut(s) 83, 494
VpaK11BI GGWCC 1 cut(s) 512
XapI RAATTY 1 cut(s) 705
XceI RCATGY 2 cut(s) 441, 789
XhoI CTCGAG 1 cut(s) 200
XspI CTAG 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.