Rmu_sc0000293.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000293.1
OG0014876
Physical Location & Seq
Forward (+)
144089 .. 144595
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000293.1_g000027.1.cds

Sequence Viewer

Length: 396 bp
atgtcccccagcatctcaaagcctatggaatcctggatacgatcgattctcgagcctagccaggatgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggaaaataaggcgaaagccatcatcctaatgactcatcatatggatgattcactctacctccgcttctgtgatttcaagtcagttcttgactacaactcggaagcacttcacattaaatccttaatggaattttgtggtaaagagatcacatatgcgatgttgattgagaaaactctctctaccttccccgtctctgcaataatggttgctaagaaaatcgaattgatgttactgcaggacagatcacaaggtttcatgagctcaatgaagctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

131

Amino Acids

14.89

Weight (kDa)

5.59

Isoelectric Point (pI)

67.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 248
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 2 cut(s) 32, 60
AluBI AGCT 4 cut(s) 86, 92, 381, 391
AluI AGCT 4 cut(s) 86, 92, 381, 391
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 50
BanII GRGCYC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 2 cut(s) 34, 62
BciVI GTATCC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 353
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 34, 62
BmeT110I CYCGRG 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 34, 62
BmsI GCATC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
BseBI CCWGG 2 cut(s) 34, 62
BseCI ATCGAT 1 cut(s) 44
BseGI GGATG 3 cut(s) 70, 141, 169
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 316
BsmBI CGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 3 cut(s) 41, 264, 362
BspACI CCGC 1 cut(s) 181
BspDI ATCGAT 1 cut(s) 44
BspHI TCATGA 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 357
BssMI GATC 3 cut(s) 41, 264, 362
Bst2UI CCWGG 2 cut(s) 34, 62
Bst4CI ACNGT 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 115, 330
BstF5I GGATG 3 cut(s) 70, 141, 169
BstKTI GATC 3 cut(s) 44, 267, 365
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 3 cut(s) 41, 264, 362
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 98, 107
BstNI CCWGG 2 cut(s) 34, 62
BstSCI CCNGG 2 cut(s) 32, 60
BstSFI CTRYAG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 122
Bsu15I ATCGAT 1 cut(s) 44
BsuI GTATCC 1 cut(s) 30
BsuTUI ATCGAT 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 70, 141, 169
Cac8I GCNNGC 1 cut(s) 84
CciI TCATGA 1 cut(s) 375
ClaI ATCGAT 1 cut(s) 44
CviAII CATG 1 cut(s) 376
CviJI RGCY 9 cut(s) 22, 55, 60, 86, 92, 113, 137, 381, 391
CviKI_1 RGCY 9 cut(s) 22, 55, 60, 86, 92, 113, 137, 381, 391
DdeI CTNAG 2 cut(s) 115, 330
DpnI GATC 3 cut(s) 43, 266, 364
DpnII GATC 3 cut(s) 41, 264, 362
Ecl136II GAGCTC 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 32, 60
EcoT38I GRGCYC 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 1 cut(s) 379
FaiI YATR 7 cut(s) 26, 159, 161, 271, 273, 377, 394
FatI CATG 1 cut(s) 375
FauNDI CATATG 2 cut(s) 159, 271
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 3 cut(s) 77, 128, 176
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 4 cut(s) 29, 46, 151, 167
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 50, 206, 376
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 317, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 107
HpyF3I CTNAG 2 cut(s) 115, 330
Hsp92II CATG 1 cut(s) 379
Kzo9I GATC 3 cut(s) 41, 264, 362
LpnPI CCDG 6 cut(s) 19, 22, 46, 47, 74, 341
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 348
MalI GATC 3 cut(s) 43, 266, 364
MboI GATC 3 cut(s) 41, 264, 362
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 2 cut(s) 248, 341
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 2 cut(s) 112, 188
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 2 cut(s) 234, 242
MslI CAYNNNNRTG 2 cut(s) 146, 162
MspR9I CCNGG 2 cut(s) 34, 62
MvaI CCWGG 2 cut(s) 34, 62
MwoI GCNNNNNNNGC 2 cut(s) 98, 107
NdeI CATATG 2 cut(s) 159, 271
NdeII GATC 3 cut(s) 41, 264, 362
NlaIII CATG 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 50
PagI TCATGA 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 3 cut(s) 29, 46, 167
PfoI TCCNGGA 1 cut(s) 32
PkrI GCNGC 1 cut(s) 112
Ple19I CGATCG 1 cut(s) 44
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 383
Psp6I CCWGG 2 cut(s) 32, 60
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 2 cut(s) 32, 60
PstI CTGCAG 1 cut(s) 357
PvuI CGATCG 1 cut(s) 44
RseI CAYNNNNRTG 2 cut(s) 146, 162
SacI GAGCTC 1 cut(s) 383
SaqAI TTAA 2 cut(s) 234, 242
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 41, 264, 362
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 34, 62
SduI GDGCHC 1 cut(s) 383
SetI ASST 7 cut(s) 88, 94, 180, 305, 373, 383, 393
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 353
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 2 cut(s) 146, 162
SmlI CTYRAG 2 cut(s) 50, 87
SmoI CTYRAG 2 cut(s) 50, 87
Sse9I AATT 2 cut(s) 248, 341
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 383
StyD4I CCNGG 2 cut(s) 32, 60
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 44, 51, 339
TasI AATT 2 cut(s) 248, 341
TfiI GAWTC 3 cut(s) 29, 46, 167
Tru1I TTAA 2 cut(s) 234, 242
Tru9I TTAA 2 cut(s) 234, 242
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 364
XapI RAATTY 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.