Rmu_sc0000946.1_g000036

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000946.1
OG0014876
Physical Location & Seq
Forward (+)
163249 .. 163677
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000946.1_g000036.1.cds

Sequence Viewer

Length: 429 bp
atgattctcaagcctagccaggacgtgctaactgttgaccaagctcaagctttggaagcaaatagagcagccttagaagcaaataaggcgaaagccatcatcctaatgactcatcatatggatgattcgctccagtacgagtatatgaacgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgaatataactgggaagcacttcgcattaaatccttaatggaattctatggtaaagatatcacagatgcgatgttgattgagaagactctctctaccttccccgtctctgcattaatggttgctaagaactatcaaatcgatgttactgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

142

Amino Acids

16.51

Weight (kDa)

4.94

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 2 cut(s) 265, 278
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 2 cut(s) 44, 50
AluI AGCT 2 cut(s) 44, 50
Alw26I GTCTC 2 cut(s) 181, 385
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 317
AseI ATTAAT 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 294
BbsI GAAGAC 2 cut(s) 162, 365
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 104, 231
BcgI CGANNNNNNTGC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 181, 385
BfaI CTAG 2 cut(s) 15, 227
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 2 cut(s) 162, 365
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 133, 290
BseBI CCWGG 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 414
BseGI GGATG 2 cut(s) 99, 127
BseNI ACTGG 2 cut(s) 133, 290
BseXI GCAGC 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 414
BsmAI GTCTC 2 cut(s) 181, 385
BsmBI CGTCTC 1 cut(s) 385
Bso31I GGTCTC 1 cut(s) 181
BspACI CCGC 1 cut(s) 250
BspDI ATCGAT 1 cut(s) 414
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 133, 290
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 73, 399
BstF5I GGATG 2 cut(s) 99, 127
BstMAI GTCTC 2 cut(s) 181, 385
BstMWI GCNNNNNNNGC 4 cut(s) 56, 65, 77, 86
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 2 cut(s) 162, 365
Bsu15I ATCGAT 1 cut(s) 414
BsuTUI ATCGAT 1 cut(s) 414
BtgZI GCGATG 1 cut(s) 359
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 2 cut(s) 99, 127
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 426
CviJI RGCY 8 cut(s) 13, 18, 44, 50, 71, 95, 169, 246
CviKI_1 RGCY 8 cut(s) 13, 18, 44, 50, 71, 95, 169, 246
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 73, 399
Eco31I GGTCTC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 1 cut(s) 429
FaiI YATR 8 cut(s) 117, 119, 144, 146, 243, 282, 324, 427
FatI CATG 1 cut(s) 425
FauNDI CATATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 86, 134
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 15, 227
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 116
Hin1II CATG 1 cut(s) 429
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 5 cut(s) 4, 109, 125, 209, 361
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 221, 275
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 159, 382
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 2 cut(s) 24, 201
HpyCH4V TGCA 2 cut(s) 386, 425
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 65, 77, 86
HpyF3I CTNAG 2 cut(s) 73, 399
HpySE526I ACGT 2 cut(s) 24, 201
Hsp92II CATG 1 cut(s) 429
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 6 cut(s) 5, 32, 146, 175, 234, 271
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 331
MaeI CTAG 2 cut(s) 15, 227
MaeII ACGT 2 cut(s) 24, 201
MaeIII GTNAC 2 cut(s) 206, 418
MboII GAAGA 4 cut(s) 164, 167, 197, 370
MluCI AATT 1 cut(s) 317
MlyI GAGTC 3 cut(s) 103, 203, 355
MnlI CCTC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 3 cut(s) 303, 311, 389
MslI CAYNNNNRTG 2 cut(s) 104, 120
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 56, 65, 77, 86
NdeI CATATG 1 cut(s) 117
NlaIII CATG 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 4, 125
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 3 cut(s) 103, 203, 355
PpsI GAGTC 3 cut(s) 103, 203, 355
PshBI ATTAAT 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 2 cut(s) 104, 120
SaqAI TTAA 3 cut(s) 303, 311, 389
SatI GCNGC 1 cut(s) 69
SchI GAGTC 3 cut(s) 103, 203, 355
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 27, 46, 52, 204, 228, 374
SfaNI GCATC 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 104, 120
SmlI CTYRAG 2 cut(s) 8, 45
SmoI CTYRAG 2 cut(s) 8, 45
Sse9I AATT 1 cut(s) 317
SsiI CCGC 1 cut(s) 250
SspMI CTAG 2 cut(s) 15, 227
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 2 cut(s) 27, 204
TaqI TCGA 2 cut(s) 183, 414
TasI AATT 1 cut(s) 317
TfiI GAWTC 2 cut(s) 4, 125
Tru1I TTAA 3 cut(s) 303, 311, 389
Tru9I TTAA 3 cut(s) 303, 311, 389
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 194
VspI ATTAAT 1 cut(s) 389
XapI RAATTY 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 15, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.