Rmu_sc0007109.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007109.1
OG0014876
Physical Location & Seq
Reverse (-)
51874 .. 54213
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007109.1_g000015.1.cds

Sequence Viewer

Length: 831 bp
atgcatcttgaacagacagaaaagaagaaaagaagaaaagaaatagagaagaaaggaagctcagcccagaaaaagaaaaagaaaaaggaagaagtcaagcccagagacaaaagcctagaaaaagtcaagcctagaagaagtcaaagcccagctacttccccacgtcatcacaggcctgtgccaagtcagcaagaaggaccacgacatgtcagaatacagacctgcgccacgtcatcaaaggggacccacaccacttcagcaaggggacccactaccacgtcagctcccaggtcaacaactggtcaaccttttggtcaacgcaggtcaaccactttcccggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcataatgactcgtcatatggatgattcgctccagtacaagtgtatgaatgaagaagaccccagaaggttgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctacaagtgagatggcataaccttcgcttctgtgatttcaactctcaaaacactctcaatcactcttaccaaatcgccatcgaaaatctcgagaaaataatccacaccctcgatgccgacggcctctcggtcctcctcaactgcctctacgatgacttcgccgaccccaaacccgccgtcgagaaagaatctttgagtccacgccgatttcacatccatcaatctcaccaaaggctcaagaatgccgactccggagagggggatggtgtcgcgacgccattgggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

276

Amino Acids

31.35

Weight (kDa)

9.67

Isoelectric Point (pI)

68.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 230, 312
AccII CGCG 1 cut(s) 815
AccIII TCCGGA 1 cut(s) 794
AciI CCGC 1 cut(s) 717
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 818
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 1 cut(s) 801
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 2 cut(s) 11, 583
AjiI CACGTC 4 cut(s) 164, 231, 279, 343
AjnI CCWGG 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 5 cut(s) 60, 152, 284, 362, 368
AluI AGCT 5 cut(s) 60, 152, 284, 362, 368
Alw26I GTCTC 2 cut(s) 99, 499
Ama87I CYCGRG 1 cut(s) 632
Aor13HI TCCGGA 1 cut(s) 794
AoxI GGCC 2 cut(s) 173, 664
ApeKI GCWGC 1 cut(s) 386
ArsI GACNNNNNNTTYG 2 cut(s) 705, 737
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 4 cut(s) 197, 243, 266, 673
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 4 cut(s) 197, 243, 266, 673
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 398
BccI CCATC 5 cut(s) 422, 549, 629, 768, 800
BceAI ACGGC 2 cut(s) 679, 704
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 1 cut(s) 289
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 99, 499
BfaI CTAG 2 cut(s) 116, 132
BfuAI ACCTGC 2 cut(s) 230, 312
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 1 cut(s) 387
BlpI GCTNAGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 2 cut(s) 289, 338
Bme18I GGWCC 4 cut(s) 197, 243, 266, 673
BmeT110I CYCGRG 1 cut(s) 632
BmgBI CACGTC 4 cut(s) 164, 231, 279, 343
BmgT120I GGNCC 4 cut(s) 197, 243, 266, 673
BmiI GGNNCC 4 cut(s) 244, 245, 267, 268
BmrFI CCNGG 2 cut(s) 289, 338
BmsI GCATC 2 cut(s) 13, 646
BpiI GAAGAC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 61
BpuEI CTTGAG 2 cut(s) 348, 764
BpuMI CCSGG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 818
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 794
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 801
Bse1I ACTGG 2 cut(s) 304, 451
BseAI TCCGGA 1 cut(s) 794
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 3 cut(s) 445, 756, 811
BseLI CCNNNNNNNGG 1 cut(s) 801
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 304, 451
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 815
BshFI GGCC 2 cut(s) 175, 666
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 2 cut(s) 338, 795
BslFI GGGAC 2 cut(s) 256, 279
BslI CCNNNNNNNGG 1 cut(s) 801
BsmAI GTCTC 2 cut(s) 99, 499
BsmFI GGGAC 2 cut(s) 256, 279
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 2 cut(s) 175, 666
Bso31I GGTCTC 1 cut(s) 499
BsoBI CYCGRG 1 cut(s) 632
Bsp13I TCCGGA 1 cut(s) 794
Bsp1720I GCTNAGC 1 cut(s) 61
Bsp68I TCGCGA 1 cut(s) 815
BspACI CCGC 1 cut(s) 717
BspANI GGCC 2 cut(s) 175, 666
BspCNI CTCAG 1 cut(s) 74
BspEI TCCGGA 1 cut(s) 794
BspFNI CGCG 1 cut(s) 815
BspLI GGNNCC 4 cut(s) 244, 245, 267, 268
BspMI ACCTGC 2 cut(s) 230, 312
BspTNI GGTCTC 1 cut(s) 499
BsrI ACTGG 2 cut(s) 304, 451
BssECI CCNNGG 1 cut(s) 287
BssNI GRCGYC 1 cut(s) 818
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 352
BstACI GRCGYC 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 61, 391
BstF5I GGATG 3 cut(s) 445, 756, 811
BstFNI CGCG 1 cut(s) 815
BstHHI GCGC 1 cut(s) 227
BstMAI GTCTC 2 cut(s) 99, 499
BstMWI GCNNNNNNNGC 5 cut(s) 187, 374, 383, 395, 404
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 287, 336
BstUI CGCG 1 cut(s) 815
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 480
BsuRI GGCC 2 cut(s) 175, 666
BtrI CACGTC 4 cut(s) 164, 231, 279, 343
BtsCI GGATG 3 cut(s) 445, 756, 811
BtuMI TCGCGA 1 cut(s) 815
BveI ACCTGC 2 cut(s) 230, 312
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 4 cut(s) 197, 243, 266, 673
CseI GACGC 1 cut(s) 826
Csp6I GTAC 1 cut(s) 454
CviAII CATG 1 cut(s) 206
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 2 cut(s) 61, 391
Eco147I AGGCCT 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 499
Eco47I GGWCC 4 cut(s) 197, 243, 266, 673
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 632
EcoO109I RGGNCCY 2 cut(s) 243, 266
EcoRII CCWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 209
FaiI YATR 6 cut(s) 207, 422, 435, 437, 464, 561
FaqI GGGAC 2 cut(s) 256, 279
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 724
FauNDI CATATG 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 3 cut(s) 452, 743, 818
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 2 cut(s) 116, 132
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 387
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 2 cut(s) 175, 666
HapII CCGG 2 cut(s) 338, 795
HgaI GACGC 1 cut(s) 826
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 818
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 4 cut(s) 294, 305, 317, 327
HindII GTYRAC 4 cut(s) 294, 305, 317, 327
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 6 cut(s) 427, 443, 527, 731, 739, 791
HpaII CCGG 2 cut(s) 338, 795
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 5 cut(s) 294, 305, 317, 327, 743
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 8 cut(s) 8, 539, 632, 634, 724, 781, 795, 814
Hpy8I GTNNAC 5 cut(s) 294, 305, 317, 327, 743
Hpy99I CGWCG 3 cut(s) 665, 725, 820
HpyAV CCTTC 3 cut(s) 188, 477, 575
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 5 cut(s) 163, 230, 278, 342, 519
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 374, 383, 395, 404
HpyF3I CTNAG 2 cut(s) 61, 391
HpySE526I ACGT 5 cut(s) 163, 230, 278, 342, 519
Hsp92I GRCGYC 1 cut(s) 818
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 225
KflI GGGWCCC 2 cut(s) 243, 266
Kpn2I TCCGGA 1 cut(s) 794
LmnI GCTCC 2 cut(s) 289, 453
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 2 cut(s) 13, 646
MaeI CTAG 2 cut(s) 116, 132
MaeII ACGT 5 cut(s) 163, 230, 278, 342, 519
MaeIII GTNAC 1 cut(s) 524
MboII GAAGA 8 cut(s) 37, 45, 61, 101, 147, 482, 485, 515
MlyI GAGTC 4 cut(s) 421, 521, 748, 785
MnlI CCTC 7 cut(s) 388, 662, 677, 686, 689, 698, 793
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 794
MslI CAYNNNNRTG 2 cut(s) 422, 438
MspI CCGG 2 cut(s) 338, 795
MspR9I CCNGG 2 cut(s) 289, 338
Mva1269I GAATGC 1 cut(s) 790
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 815
MwoI GCNNNNNNNGC 5 cut(s) 187, 374, 383, 395, 404
NciI CCSGG 1 cut(s) 338
NdeI CATATG 1 cut(s) 435
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 4 cut(s) 244, 245, 267, 268
NmuCI GTSAC 1 cut(s) 524
NruI TCGCGA 1 cut(s) 815
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 632
PceI AGGCCT 1 cut(s) 175
PciI ACATGT 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PctI GAATGC 1 cut(s) 790
PfeI GAWTC 2 cut(s) 443, 731
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 4 cut(s) 421, 521, 747, 785
PpsI GAGTC 4 cut(s) 421, 521, 747, 785
PpuMI RGGWCCY 2 cut(s) 243, 266
PscI ACATGT 1 cut(s) 205
Psp5II RGGWCCY 2 cut(s) 243, 266
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 4 cut(s) 244, 245, 267, 268
PspPI GGNCC 4 cut(s) 197, 243, 266, 673
PspPPI RGGWCCY 2 cut(s) 243, 266
RruI TCGCGA 1 cut(s) 815
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 2 cut(s) 422, 438
SatI GCNGC 1 cut(s) 387
Sau96I GGNCC 4 cut(s) 197, 243, 266, 673
SchI GAGTC 4 cut(s) 421, 521, 748, 785
ScrFI CCNGG 2 cut(s) 289, 338
SfaNI GCATC 2 cut(s) 13, 646
Sfr274I CTCGAG 1 cut(s) 632
SinI GGWCC 4 cut(s) 197, 243, 266, 673
SlaI CTCGAG 1 cut(s) 632
SmiMI CAYNNNNRTG 2 cut(s) 422, 438
SmlI CTYRAG 3 cut(s) 363, 632, 779
SmoI CTYRAG 3 cut(s) 363, 632, 779
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 1 cut(s) 717
SspMI CTAG 2 cut(s) 116, 132
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 287, 336
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 5 cut(s) 166, 233, 281, 345, 522
TaqI TCGA 5 cut(s) 501, 624, 633, 654, 723
TaqII GACCGA 1 cut(s) 661
TatI WGTACW 1 cut(s) 453
TfiI GAWTC 2 cut(s) 443, 731
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 2 cut(s) 479, 483
TspGWI ACGGA 1 cut(s) 512
VpaK11BI GGWCC 4 cut(s) 197, 243, 266, 673
XceI RCATGY 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 632
XspI CTAG 2 cut(s) 116, 132
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.