Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009304.1

Orthogroup ID

OG0014876

Physical Location & Seq

Genomic Coordinates Reverse (-)

5533 .. 5997

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009304.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgattctcgagcctagccaggacgtgctaactgttgagcaagctcaagctttggaagcaactagagcaaccttggaggcaaataaggtgaaagccatcatcctaatgactcgtcatatggatgattcgctccagtacgagtgtatgaatgaagaagaccccagaaagctgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgactacaactcggaagcacttcacattaaatccttaatggaattctgtggtaaagagatgacagatgcgatgttgattgagaagactctctctaccttccccgtctctgcattgttggttgctaaaaactatcgaatcgaggttactgcaagacggatcaaaggtttcatgagctcattggagctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

154

Amino Acids

17.79

Weight (kDa)

5.14

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014876)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000293.1_g000027 Rmu_sc0000795.1_g000040 Rmu_sc0000946.1_g000036 Rmu_sc0001123.1_g000017 Rmu_sc0001266.1_g000008 Rmu_sc0001986.1_g000024 Rmu_sc0004345.1_g000021 Rmu_sc0004376.1_g000003 Rmu_sc0004988.1_g000028 Rmu_sc0006767.1_g000004 Rmu_sc0006782.1_g000012 Rmu_sc0007109.1_g000015 Rmu_sc0007892.1_g000003 Rmu_sc0009304.1_g000003 Rmu_sc0011631.1_g000003 Rmu_sc0037843.1_g000001 Rmu_ssc0000240.1_g000030

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0000293.1_g000027 Rmu_sc0000795.1_g000040 Rmu_sc0000946.1_g000036 Rmu_sc0001123.1_g000017 Rmu_sc0001266.1_g000008 Rmu_sc0001986.1_g000024 Rmu_sc0004345.1_g000021 Rmu_sc0004376.1_g000003 Rmu_sc0004988.1_g000028 Rmu_sc0006767.1_g000004 Rmu_sc0006782.1_g000012 Rmu_sc0007109.1_g000015 Rmu_sc0007892.1_g000003 Rmu_sc0009304.1_g000003 Rmu_sc0011631.1_g000003 Rmu_sc0037843.1_g000001 Rmu_ssc0000240.1_g000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	5 cut(s)	44, 50, 169, 450, 460
AluI	AGCT	5 cut(s)	44, 50, 169, 450, 460
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	2 cut(s)	181, 385
AlwI	GGATC	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	452
BbsI	GAAGAC	2 cut(s)	162, 365
Bbv12I	GWGCWC	1 cut(s)	452
BccI	CCATC	2 cut(s)	104, 231
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	2 cut(s)	181, 385
BfaI	CTAG	3 cut(s)	15, 63, 227
Bme1390I	CCNGG	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	162, 365
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	99, 127
BseNI	ACTGG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	8
BsmAI	GTCTC	2 cut(s)	181, 385
BsmBI	CGTCTC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	432
BspACI	CCGC	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	444
BspPI	GGATC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	99, 127
BstKTI	GATC	1 cut(s)	435
BstMAI	GTCTC	2 cut(s)	181, 385
BstMBI	GATC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 65
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstV2I	GAAGAC	2 cut(s)	162, 365
BtgZI	GCGATG	1 cut(s)	359
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	99, 127
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	1 cut(s)	445
CviJI	RGCY	9 cut(s)	13, 18, 44, 50, 95, 169, 246, 450, 460
CviKI_1	RGCY	9 cut(s)	13, 18, 44, 50, 95, 169, 246, 450, 460
CviQI	GTAC	1 cut(s)	136
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	1 cut(s)	448
FaiI	YATR	6 cut(s)	117, 119, 146, 243, 446, 463
FatI	CATG	1 cut(s)	444
FauNDI	CATATG	1 cut(s)	117
FokI	GGATG	2 cut(s)	86, 134
FriOI	GRGCYC	1 cut(s)	452
FspBI	CTAG	3 cut(s)	15, 63, 227
GsuI	CTGGAG	1 cut(s)	116
Hin1II	CATG	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	6 cut(s)	4, 109, 125, 209, 361, 411
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	4 cut(s)	8, 221, 275, 445
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	24, 201
HpyCH4V	TGCA	2 cut(s)	386, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 65
HpySE526I	ACGT	2 cut(s)	24, 201
Hsp92II	CATG	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	432
LmnI	GCTCC	2 cut(s)	135, 457
LpnPI	CCDG	5 cut(s)	5, 32, 146, 175, 234
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	15, 63, 227
MaeII	ACGT	2 cut(s)	24, 201
MaeIII	GTNAC	2 cut(s)	206, 418
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MboII	GAAGA	4 cut(s)	164, 167, 197, 370
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	3 cut(s)	103, 203, 355
MnlI	CCTC	3 cut(s)	70, 257, 409
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	2 cut(s)	303, 311
MslI	CAYNNNNRTG	2 cut(s)	104, 120
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	56, 65
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	8
PagI	TCATGA	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	4, 125, 411
PleI	GAGTC	3 cut(s)	103, 203, 355
PpsI	GAGTC	3 cut(s)	103, 203, 355
Psp124BI	GAGCTC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	104, 120
SacI	GAGCTC	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	303, 311
Sau3AI	GATC	1 cut(s)	432
SchI	GAGTC	3 cut(s)	103, 203, 355
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	1 cut(s)	331
Sfr274I	CTCGAG	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	8
SmiMI	CAYNNNNRTG	2 cut(s)	104, 120
SmlI	CTYRAG	2 cut(s)	8, 45
SmoI	CTYRAG	2 cut(s)	8, 45
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	3 cut(s)	15, 63, 227
SstI	GAGCTC	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	2 cut(s)	27, 204
TaqI	TCGA	4 cut(s)	9, 183, 409, 414
TasI	AATT	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	4, 125, 411
Tru1I	TTAA	2 cut(s)	303, 311
Tru9I	TTAA	2 cut(s)	303, 311
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	161, 165, 433
TspGWI	ACGGA	2 cut(s)	194, 445
XapI	RAATTY	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	15, 63, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.