Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004345.1

Orthogroup ID

OG0014876

Physical Location & Seq

Genomic Coordinates Reverse (-)

66801 .. 68354

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004345.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgattctcgagcctagccaggatgtgataactgttgagcaagctcaagctttagaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgacttgtcatatggatgattcgctccagtacgagtatatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctaacctagaagtgagatggcaaagcctccgcttctgtgatttcaagttagttcttgactataactcggaagcacttcacattaaatccttaatggaattctgtggtaaagagatcacagatgcgaagttgattgagaagactctctctaccttccccgtctctgcattgatggttgctaagaactatcgaatcgatctgcctaaggcaccgcctccgtccaccaccagcctagggctggcgcagtccctatccatgatgccatggatggcgtccatcatgatgatggcaccccaggtgatgctgcaatcaccaacttgcttcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

182

Amino Acids

20.71

Weight (kDa)

5.11

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014876)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000293.1_g000027 Rmu_sc0000795.1_g000040 Rmu_sc0000946.1_g000036 Rmu_sc0001123.1_g000017 Rmu_sc0001266.1_g000008 Rmu_sc0001986.1_g000024 Rmu_sc0004345.1_g000021 Rmu_sc0004376.1_g000003 Rmu_sc0004988.1_g000028 Rmu_sc0006767.1_g000004 Rmu_sc0006782.1_g000012 Rmu_sc0007109.1_g000015 Rmu_sc0007892.1_g000003 Rmu_sc0009304.1_g000003 Rmu_sc0011631.1_g000003 Rmu_sc0037843.1_g000001 Rmu_ssc0000240.1_g000030

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0000293.1_g000027 Rmu_sc0000795.1_g000040 Rmu_sc0000946.1_g000036 Rmu_sc0001123.1_g000017 Rmu_sc0001266.1_g000008 Rmu_sc0001986.1_g000024 Rmu_sc0004345.1_g000021 Rmu_sc0004376.1_g000003 Rmu_sc0004988.1_g000028 Rmu_sc0006767.1_g000004 Rmu_sc0006782.1_g000012 Rmu_sc0007109.1_g000015 Rmu_sc0007892.1_g000003 Rmu_sc0009304.1_g000003 Rmu_sc0011631.1_g000003 Rmu_sc0037843.1_g000001 Rmu_ssc0000240.1_g000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	427, 508
AciI	CCGC	2 cut(s)	250, 431
AcsI	RAATTY	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	491
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	453, 457
AgsI	TTSAA	2 cut(s)	265, 544
AjnI	CCWGG	2 cut(s)	18, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	2 cut(s)	44, 50
AluI	AGCT	2 cut(s)	44, 50
Alw26I	GTCTC	2 cut(s)	181, 385
Ama87I	CYCGRG	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	68, 523
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	294
AspA2I	CCTAGG	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	522, 529
AvaI	CYCGRG	1 cut(s)	8
AvrII	CCTAGG	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	423
BanI	GGYRCC	2 cut(s)	427, 508
BbsI	GAAGAC	2 cut(s)	162, 365
BbvI	GCAGC	2 cut(s)	80, 510
BccI	CCATC	6 cut(s)	104, 231, 385, 481, 499, 503
BciT130I	CCWGG	2 cut(s)	20, 515
BcoDI	GTCTC	2 cut(s)	181, 385
BfaI	CTAG	3 cut(s)	15, 227, 452
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	69, 524
BlnI	CCTAGG	1 cut(s)	451
BlsI	GCNGC	2 cut(s)	70, 525
Bme1390I	CCNGG	2 cut(s)	20, 515
BmeT110I	CYCGRG	1 cut(s)	8
BmiI	GGNNCC	2 cut(s)	429, 510
BmrFI	CCNGG	2 cut(s)	20, 515
BmsI	GCATC	3 cut(s)	331, 468, 510
BpiI	GAAGAC	2 cut(s)	162, 365
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	451, 482, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 457
Bse1I	ACTGG	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	20, 515
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	3 cut(s)	451, 482, 513
BseGI	GGATG	4 cut(s)	28, 99, 127, 492
BseLI	CCNNNNNNNGG	2 cut(s)	453, 457
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	80, 510
BshNI	GGYRCC	2 cut(s)	427, 508
BshVI	ATCGAT	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	453, 457
BsmAI	GTCTC	2 cut(s)	181, 385
BsmBI	CGTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	451
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	333, 415
Bsp19I	CCATGG	1 cut(s)	482
BspACI	CCGC	2 cut(s)	250, 431
BspDI	ATCGAT	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	429, 510
BspT107I	GGYRCC	2 cut(s)	427, 508
BspTNI	GGTCTC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	451, 482, 513
BssMI	GATC	2 cut(s)	333, 415
BssNI	GRCGYC	1 cut(s)	491
BssT1I	CCWWGG	2 cut(s)	451, 482
Bst2UI	CCWGG	2 cut(s)	20, 515
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	42, 459
BstDEI	CTNAG	3 cut(s)	73, 399, 423
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	4 cut(s)	28, 99, 127, 492
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	2 cut(s)	336, 418
BstMAI	GTCTC	2 cut(s)	181, 385
BstMBI	GATC	2 cut(s)	333, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 65, 77, 86
BstNI	CCWGG	2 cut(s)	20, 515
BstSCI	CCNGG	2 cut(s)	18, 513
BstV1I	GCAGC	2 cut(s)	80, 510
BstV2I	GAAGAC	2 cut(s)	162, 365
Bsu15I	ATCGAT	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	482
BtsCI	GGATG	4 cut(s)	28, 99, 127, 492
Cac8I	GCNNGC	2 cut(s)	42, 459
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	3 cut(s)	475, 483, 499
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	3 cut(s)	73, 399, 423
DpnI	GATC	2 cut(s)	335, 417
DpnII	GATC	2 cut(s)	333, 415
Eco130I	CCWWGG	2 cut(s)	451, 482
Eco31I	GGTCTC	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	18, 513
EcoT14I	CCWWGG	2 cut(s)	451, 482
ErhI	CCWWGG	2 cut(s)	451, 482
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	3 cut(s)	478, 486, 502
FaiI	YATR	8 cut(s)	117, 119, 144, 146, 282, 476, 484, 500
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	3 cut(s)	474, 482, 498
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	69, 524
FokI	GGATG	4 cut(s)	35, 86, 134, 499
Fsp4HI	GCNGC	2 cut(s)	69, 524
FspBI	CTAG	3 cut(s)	15, 227, 452
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	2 cut(s)	69, 524
GsuI	CTGGAG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	478, 486, 502
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	5 cut(s)	4, 125, 209, 361, 411
HphI	GGTGA	2 cut(s)	522, 529
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	8, 275, 499
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	2 cut(s)	159, 382
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	386, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 65, 77, 86
HpyF3I	CTNAG	3 cut(s)	73, 399, 423
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	491
Hsp92II	CATG	3 cut(s)	478, 486, 502
HspAI	GCGC	1 cut(s)	461
Kzo9I	GATC	2 cut(s)	333, 415
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	8 cut(s)	5, 32, 146, 175, 443, 460, 500, 527
Lsp1109I	GCAGC	2 cut(s)	80, 510
LweI	GCATC	3 cut(s)	331, 468, 510
MaeI	CTAG	3 cut(s)	15, 227, 452
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	335, 417
MboI	GATC	2 cut(s)	333, 415
MboII	GAAGA	4 cut(s)	164, 167, 197, 370
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	2 cut(s)	203, 355
MnlI	CCTC	3 cut(s)	70, 257, 444
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	2 cut(s)	303, 311
MslI	CAYNNNNRTG	4 cut(s)	104, 120, 500, 503
MspR9I	CCNGG	2 cut(s)	20, 515
MvaI	CCWGG	2 cut(s)	20, 515
MwoI	GCNNNNNNNGC	4 cut(s)	56, 65, 77, 86
NcoI	CCATGG	1 cut(s)	482
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	2 cut(s)	333, 415
NlaIII	CATG	3 cut(s)	478, 486, 502
NlaIV	GGNNCC	2 cut(s)	429, 510
NmuCI	GTSAC	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	8
PagI	TCATGA	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	4, 125, 411
PkrI	GCNGC	2 cut(s)	70, 525
PleI	GAGTC	2 cut(s)	203, 355
PpsI	GAGTC	2 cut(s)	203, 355
Psp6I	CCWGG	2 cut(s)	18, 513
PspGI	CCWGG	2 cut(s)	18, 513
PspN4I	GGNNCC	2 cut(s)	429, 510
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	4 cut(s)	104, 120, 500, 503
SaqAI	TTAA	2 cut(s)	303, 311
SatI	GCNGC	2 cut(s)	69, 524
Sau3AI	GATC	2 cut(s)	333, 415
SchI	GAGTC	2 cut(s)	203, 355
ScrFI	CCNGG	2 cut(s)	20, 515
SetI	ASST	6 cut(s)	46, 52, 204, 228, 374, 519
SfaNI	GCATC	3 cut(s)	331, 468, 510
Sfr274I	CTCGAG	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	8
SmiMI	CAYNNNNRTG	4 cut(s)	104, 120, 500, 503
SmlI	CTYRAG	2 cut(s)	8, 45
SmoI	CTYRAG	2 cut(s)	8, 45
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	2 cut(s)	250, 431
SspMI	CTAG	3 cut(s)	15, 227, 452
StyD4I	CCNGG	2 cut(s)	18, 513
StyI	CCWWGG	2 cut(s)	451, 482
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	9, 183, 409, 414
TasI	AATT	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	4, 125, 411
Tru1I	TTAA	2 cut(s)	303, 311
Tru9I	TTAA	2 cut(s)	303, 311
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	68, 523
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	161, 165
TspGWI	ACGGA	2 cut(s)	194, 426
XapI	RAATTY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	2 cut(s)	454, 502
XhoI	CTCGAG	1 cut(s)	8
XmaJI	CCTAGG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	15, 227, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.