Rmu_sc0006767.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006767.1
OG0014876
Physical Location & Seq
Forward (+)
11944 .. 12315
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006767.1_g000004.1.cds

Sequence Viewer

Length: 372 bp
atgattctcgagcctagccaggacgtgataactgtagagcaagctcaagctttggaagcaaatagagcaaccttagaggcaaataaggcaaaagccatcatcctaatgactcgtcatatggatgattcgctccagtacgagtatatgaatgaagaaaaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgactataactcggaagcacttcgcattaaatcacaaagcgcctcaatcaatggagttcgagcaaagagatgtatgttctcgatgtgcagtgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

123

Amino Acids

14.27

Weight (kDa)

5.7

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 250
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 265
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 2 cut(s) 44, 50
AluI AGCT 2 cut(s) 44, 50
Alw26I GTCTC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 369
Ama87I CYCGRG 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 8
BccI CCATC 2 cut(s) 104, 231
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 15, 227
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 8
BmgBI CACGTC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 99, 127
BseNI ACTGG 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 8
BspACI CCGC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 99, 127
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 86
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 2 cut(s) 99, 127
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 369
CfoI GCGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 7 cut(s) 13, 18, 44, 50, 95, 169, 246
CviKI_1 RGCY 7 cut(s) 13, 18, 44, 50, 95, 169, 246
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 18
FaiI YATR 7 cut(s) 117, 119, 144, 146, 243, 282, 350
FauNDI CATATG 1 cut(s) 117
FokI GGATG 2 cut(s) 86, 134
FspBI CTAG 2 cut(s) 15, 227
GlaI GCGC 1 cut(s) 316
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 318
HhaI GCGC 1 cut(s) 317
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 4 cut(s) 4, 109, 125, 209
Hpy188I TCNGA 2 cut(s) 289, 371
Hpy188III TCNNGA 4 cut(s) 8, 221, 275, 355
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 2 cut(s) 24, 201
HpyCH4V TGCA 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 86
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 2 cut(s) 24, 201
HspAI GCGC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 5 cut(s) 5, 32, 146, 175, 234
MaeI CTAG 2 cut(s) 15, 227
MaeII ACGT 2 cut(s) 24, 201
MaeIII GTNAC 1 cut(s) 206
MboII GAAGA 2 cut(s) 164, 197
MlyI GAGTC 2 cut(s) 103, 203
MnlI CCTC 3 cut(s) 70, 257, 328
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 104, 120
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 86
NdeI CATATG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 4, 125
PleI GAGTC 2 cut(s) 103, 203
PpsI GAGTC 2 cut(s) 103, 203
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 369
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 2 cut(s) 104, 120
SaqAI TTAA 1 cut(s) 303
SchI GAGTC 2 cut(s) 103, 203
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 27, 46, 52, 74, 204, 228
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 104, 120
SmlI CTYRAG 2 cut(s) 8, 45
SmoI CTYRAG 2 cut(s) 8, 45
SsiI CCGC 1 cut(s) 250
SspMI CTAG 2 cut(s) 15, 227
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 2 cut(s) 27, 204
TaqI TCGA 4 cut(s) 9, 183, 334, 356
TfiI GAWTC 2 cut(s) 4, 125
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 161, 165
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 370
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 15, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.