Rmu_sc0006782.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006782.1
OG0014876
Physical Location & Seq
Forward (+)
45967 .. 48967
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006782.1_g000012.1.cds

Sequence Viewer

Length: 897 bp
atgattctcgagcctaggcaggacgtgctaactgttgagcaagctcaagctttggaagaaaatagagcaaccttagaggcaaataaggcgaacgccatcatcctaatgactcgtcatatggatgattcgctccagtacgagtatatgaatgaagaagaccccaaaaggttgtgggtctcagtcgaagaaatatttggcaacgtccgtgattccttacttcctgacctagaagtgcgatggcatagcctctgcttctgtgatttcaagattgactacaactcggaagcacttcgcattaaatccttaatggacttcagtggaaaagatatcacaaatgcgatgttgattgagaggactctctctaccttccccttctttgcattgatggttgctaagaactatcgaatcgatgttactgcaggatggatcacaagcgagtttacattgaagactttctatggttattgtattgggactgatgttggacatcacatttccatgaacacacccaaatggtctcgcggaaatgtctacgatggtagtctggacattggtaatgcgcgccaatctccttatattcacttggggtggtgcaatatcgcatgcagctatgctaattcgtctacgacccaccgccactcaatctacctctgcattacagctagtgactgggtaaaagtatcgtacttacgcatctttgagtgtgccatttatgtgccaattgcgccaccacagcgctctatgatgggccatctccttatcgctagatttgagggttgtcactttgatgagacagttttcccgtcgttagggggagataagaacacggatgttcagcaggaacgactggaattgtcgtggcctgtccccactatgtctcatctcgatccctactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

298

Amino Acids

34.22

Weight (kDa)

5.26

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 531, 623
AccII CGCG 2 cut(s) 522, 562
AciI CCGC 2 cut(s) 522, 634
AclWI GGATC 2 cut(s) 434, 881
AcuI CTGAAG 1 cut(s) 298
AfaI GTAC 2 cut(s) 137, 686
AfeI AGCGCT 1 cut(s) 737
AfiI CCNNNNNNNGG 1 cut(s) 809
AgsI TTSAA 2 cut(s) 265, 448
AjiI CACGTC 1 cut(s) 25
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 4 cut(s) 44, 50, 609, 662
AluI AGCT 4 cut(s) 44, 50, 609, 662
Alw26I GTCTC 4 cut(s) 181, 522, 785, 882
AlwI GGATC 2 cut(s) 434, 881
Ama87I CYCGRG 1 cut(s) 8
Aor51HI AGCGCT 1 cut(s) 737
AoxI GGCC 2 cut(s) 748, 860
ApeKI GCWGC 1 cut(s) 606
Asp700I GAANNNNTTC 2 cut(s) 288, 452
AspA2I CCTAGG 1 cut(s) 14
AspLEI GCGC 4 cut(s) 562, 564, 727, 738
AspS9I GGNCC 1 cut(s) 748
AvaI CYCGRG 1 cut(s) 8
AvrII CCTAGG 1 cut(s) 14
BbsI GAAGAC 2 cut(s) 162, 455
BbvI GCAGC 1 cut(s) 618
BccI CCATC 7 cut(s) 104, 231, 379, 417, 530, 739, 759
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BcoDI GTCTC 4 cut(s) 181, 522, 785, 882
BfaI CTAG 4 cut(s) 15, 227, 663, 765
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 739
BisI GCNGC 1 cut(s) 607
BlnI CCTAGG 1 cut(s) 14
BlsI GCNGC 1 cut(s) 608
BmeT110I CYCGRG 1 cut(s) 8
BmgBI CACGTC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 748
BmrI ACTGGG 1 cut(s) 679
BmsI GCATC 1 cut(s) 702
BmuI ACTGGG 1 cut(s) 679
BpiI GAAGAC 2 cut(s) 162, 455
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 408
BsaI GGTCTC 2 cut(s) 181, 522
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 809
Bse1I ACTGG 3 cut(s) 133, 674, 852
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 4 cut(s) 99, 127, 428, 835
BseLI CCNNNNNNNGG 1 cut(s) 809
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 3 cut(s) 133, 674, 852
BsePI GCGCGC 1 cut(s) 560
BseXI GCAGC 1 cut(s) 618
Bsh1236I CGCG 2 cut(s) 522, 562
BshFI GGCC 2 cut(s) 750, 862
BshVI ATCGAT 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 487, 851
BslI CCNNNNNNNGG 1 cut(s) 809
BsmAI GTCTC 4 cut(s) 181, 522, 785, 882
BsmFI GGGAC 2 cut(s) 487, 851
BsnI GGCC 2 cut(s) 750, 862
Bso31I GGTCTC 2 cut(s) 181, 522
BsoBI CYCGRG 1 cut(s) 8
Bsp143I GATC 2 cut(s) 426, 886
BspACI CCGC 2 cut(s) 522, 634
BspANI GGCC 2 cut(s) 750, 862
BspCNI CTCAG 1 cut(s) 191
BspDI ATCGAT 1 cut(s) 408
BspFNI CGCG 2 cut(s) 522, 562
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 2 cut(s) 434, 881
BspTNI GGTCTC 2 cut(s) 181, 522
BsrI ACTGG 3 cut(s) 133, 674, 852
BssECI CCNNGG 1 cut(s) 14
BssHII GCGCGC 1 cut(s) 560
BssMI GATC 2 cut(s) 426, 886
BssT1I CCWWGG 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 34, 796
BstAPI GCANNNNNTGC 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 42, 562, 604
BstDEI CTNAG 3 cut(s) 73, 178, 393
BstF5I GGATG 4 cut(s) 99, 127, 428, 835
BstFNI CGCG 2 cut(s) 522, 562
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 4 cut(s) 562, 564, 727, 738
BstKTI GATC 2 cut(s) 429, 889
BstMAI GTCTC 4 cut(s) 181, 522, 785, 882
BstMBI GATC 2 cut(s) 426, 886
BstMWI GCNNNNNNNGC 4 cut(s) 25, 86, 724, 733
BstNSI RCATGY 1 cut(s) 606
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 2 cut(s) 522, 562
BstV1I GCAGC 1 cut(s) 618
BstV2I GAAGAC 2 cut(s) 162, 455
Bsu15I ATCGAT 1 cut(s) 408
BsuRI GGCC 2 cut(s) 750, 862
BsuTUI ATCGAT 1 cut(s) 408
BtgZI GCGATG 2 cut(s) 250, 353
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 4 cut(s) 99, 127, 428, 835
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 3 cut(s) 42, 562, 604
CfoI GCGC 4 cut(s) 562, 564, 727, 738
Cfr13I GGNCC 1 cut(s) 748
ClaI ATCGAT 1 cut(s) 408
Csp6I GTAC 2 cut(s) 136, 685
CviAII CATG 2 cut(s) 499, 603
CviJI RGCY 8 cut(s) 13, 44, 50, 246, 609, 662, 750, 862
CviKI_1 RGCY 8 cut(s) 13, 44, 50, 246, 609, 662, 750, 862
CviQI GTAC 2 cut(s) 136, 685
DdeI CTNAG 3 cut(s) 73, 178, 393
DpnI GATC 2 cut(s) 428, 888
DpnII GATC 2 cut(s) 426, 886
Eco130I CCWWGG 1 cut(s) 14
Eco31I GGTCTC 2 cut(s) 181, 522
Eco32I GATATC 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 737
Eco57I CTGAAG 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 8
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 502, 606
FaqI GGGAC 2 cut(s) 487, 851
FatI CATG 2 cut(s) 498, 602
FauNDI CATATG 1 cut(s) 117
FblI GTMKAC 2 cut(s) 531, 623
Fnu4HI GCNGC 1 cut(s) 607
FokI GGATG 4 cut(s) 86, 134, 435, 842
Fsp4HI GCNGC 1 cut(s) 607
FspBI CTAG 4 cut(s) 15, 227, 663, 765
GlaI GCGC 4 cut(s) 561, 563, 726, 737
GluI GCNGC 1 cut(s) 607
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 2 cut(s) 750, 862
HhaI GCGC 4 cut(s) 562, 564, 727, 738
Hin1II CATG 2 cut(s) 502, 606
Hin6I GCGC 4 cut(s) 560, 562, 725, 736
HinP1I GCGC 4 cut(s) 560, 562, 725, 736
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 6 cut(s) 4, 109, 125, 209, 355, 405
Hpy166II GTNNAC 3 cut(s) 441, 532, 624
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 5 cut(s) 8, 221, 265, 545, 884
Hpy8I GTNNAC 3 cut(s) 441, 532, 624
Hpy99I CGWCG 1 cut(s) 808
HpyAV CCTTC 2 cut(s) 376, 382
HpyCH4III ACNGT 2 cut(s) 34, 796
HpyCH4IV ACGT 2 cut(s) 24, 201
HpyCH4V TGCA 5 cut(s) 380, 419, 594, 606, 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 86, 724, 733
HpyF3I CTNAG 3 cut(s) 73, 178, 393
HpySE526I ACGT 2 cut(s) 24, 201
Hsp92II CATG 2 cut(s) 502, 606
HspAI GCGC 4 cut(s) 560, 562, 725, 736
Kzo9I GATC 2 cut(s) 426, 886
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 9 cut(s) 5, 146, 234, 405, 530, 655, 824, 833, 876
Lsp1109I GCAGC 1 cut(s) 618
LweI GCATC 1 cut(s) 702
MaeI CTAG 4 cut(s) 15, 227, 663, 765
MaeII ACGT 2 cut(s) 24, 201
MaeIII GTNAC 3 cut(s) 412, 665, 779
MalI GATC 2 cut(s) 428, 888
MboI GATC 2 cut(s) 426, 886
MboII GAAGA 5 cut(s) 68, 164, 167, 197, 460
MfeI CAATTG 1 cut(s) 720
MluCI AATT 3 cut(s) 616, 720, 851
MlyI GAGTC 2 cut(s) 103, 349
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 5 cut(s) 70, 257, 345, 659, 766
MroXI GAANNNNTTC 2 cut(s) 288, 452
MseI TTAA 2 cut(s) 297, 305
MslI CAYNNNNRTG 6 cut(s) 104, 120, 497, 511, 713, 786
MunI CAATTG 1 cut(s) 720
MvnI CGCG 2 cut(s) 522, 562
MwoI GCNNNNNNNGC 4 cut(s) 25, 86, 724, 733
NdeI CATATG 1 cut(s) 117
NdeII GATC 2 cut(s) 426, 886
NlaIII CATG 2 cut(s) 502, 606
NmuCI GTSAC 2 cut(s) 665, 779
NspI RCATGY 1 cut(s) 606
PaeI GCATGC 1 cut(s) 606
PaeR7I CTCGAG 1 cut(s) 8
PauI GCGCGC 1 cut(s) 560
PdmI GAANNNNTTC 2 cut(s) 288, 452
PfeI GAWTC 4 cut(s) 4, 125, 209, 405
PkrI GCNGC 1 cut(s) 608
PleI GAGTC 2 cut(s) 103, 349
PpsI GAGTC 2 cut(s) 103, 349
PspPI GGNCC 1 cut(s) 748
PstI CTGCAG 1 cut(s) 421
PteI GCGCGC 1 cut(s) 560
RsaI GTAC 2 cut(s) 137, 686
RsaNI GTAC 2 cut(s) 136, 685
RseI CAYNNNNRTG 6 cut(s) 104, 120, 497, 511, 713, 786
SaqAI TTAA 2 cut(s) 297, 305
SatI GCNGC 1 cut(s) 607
Sau3AI GATC 2 cut(s) 426, 886
Sau96I GGNCC 1 cut(s) 748
SchI GAGTC 2 cut(s) 103, 349
SfaNI GCATC 1 cut(s) 702
SfcI CTRYAG 1 cut(s) 417
Sfr274I CTCGAG 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 6 cut(s) 104, 120, 497, 511, 713, 786
SmlI CTYRAG 2 cut(s) 8, 45
SmoI CTYRAG 2 cut(s) 8, 45
SphI GCATGC 1 cut(s) 606
Sse9I AATT 3 cut(s) 616, 720, 851
SsiI CCGC 2 cut(s) 522, 634
SspI AATATT 1 cut(s) 192
SspMI CTAG 4 cut(s) 15, 227, 663, 765
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 34, 796
TaiI ACGT 2 cut(s) 27, 204
TaqI TCGA 5 cut(s) 9, 183, 403, 408, 885
TasI AATT 3 cut(s) 616, 720, 851
TfiI GAWTC 4 cut(s) 4, 125, 209, 405
Tru1I TTAA 2 cut(s) 297, 305
Tru9I TTAA 2 cut(s) 297, 305
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 2 cut(s) 665, 779
TseI GCWGC 1 cut(s) 606
Tsp45I GTSAC 2 cut(s) 665, 779
TspDTI ATGAA 3 cut(s) 161, 165, 515
TspGWI ACGGA 2 cut(s) 194, 842
TspRI CASTG 1 cut(s) 322
XceI RCATGY 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 8
XmaJI CCTAGG 1 cut(s) 14
XmiI GTMKAC 2 cut(s) 531, 623
XmnI GAANNNNTTC 2 cut(s) 288, 452
XspI CTAG 4 cut(s) 15, 227, 663, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.