Rmu_sc0007892.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007892.1
OG0014876
Physical Location & Seq
Reverse (-)
4037 .. 6368
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007892.1_g000003.1.cds

Sequence Viewer

Length: 801 bp
atgcaaacaccgccacagaaccccaccacgacctatcgctccatgattctacgccgccgccgaagtcgaaaccgccacgacccagcgctcctcaacatctgcaacgccgtcgatctgcaaatcgagacccaccataactgcaccgcacgcatcccagagaaattcgctcgcgctagcctcgccgtcgctgcagccttacctccccttgcgttcgtcacagaccctctagcgagtagcccacagcgcctacccagcgcgcacctgcccgtagcagcccatcacgcagttaacctcgccaccgacagagccctcgcctttgtcagccagtgcctgcaactaggattaattgcagtctgcaatcctataacaaggattgaaaccacgctgcaatcctacaaatcgcctagccaggacgtgataactgttgagcaagctcaagctttggaagcaaatagagtagtcttagaggcaaataaggcgaaagccatcatcctaatgactcgccatatggatgattcgctccagtacgagtatatgaatgaagaataccccagaaggctgtgggtctcactcaaagaaagatttggcaacgtccgtgactccttgcttcgtgacctagaagtgagatcgcatagcctccgcttctgtgatttcaagtcagttcttgactataactcggaagcacttcgcattaaatccttaatggaattatgtggtaaagagatcacagatgcgatgttgattgagaagactctctctaactcccccgtctcttcattgatggttgctaagaactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

266

Amino Acids

29.98

Weight (kDa)

8.92

Isoelectric Point (pI)

67.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 270
AccII CGCG 2 cut(s) 171, 257
AciI CCGC 6 cut(s) 11, 55, 58, 73, 144, 640
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 1 cut(s) 527
AfeI AGCGCT 1 cut(s) 87
AgsI TTSAA 2 cut(s) 377, 655
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 2 cut(s) 434, 440
AluI AGCT 2 cut(s) 434, 440
Alw26I GTCTC 3 cut(s) 119, 571, 775
AlwNI CAGNNNCTG 1 cut(s) 331
Aor51HI AGCGCT 1 cut(s) 87
ApeKI GCWGC 4 cut(s) 188, 191, 272, 385
ApoI RAATTY 1 cut(s) 161
AseI ATTAAT 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 684
AspLEI GCGC 5 cut(s) 88, 173, 246, 257, 259
AsuNHI GCTAGC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 755
BbvI GCAGC 4 cut(s) 175, 203, 284, 372
BccI CCATC 3 cut(s) 285, 494, 775
BceAI ACGGC 2 cut(s) 92, 167
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 1 cut(s) 410
BcoDI GTCTC 3 cut(s) 119, 571, 775
BfaI CTAG 5 cut(s) 174, 227, 338, 405, 617
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 2 cut(s) 89, 247
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 6 cut(s) 55, 58, 189, 192, 273, 386
BlsI GCNGC 6 cut(s) 56, 59, 190, 193, 274, 387
Bme1390I CCNGG 1 cut(s) 410
BmgBI CACGTC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 159, 721
BmtI GCTAGC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 755
BpmI CTGGAG 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 420
BsaI GGTCTC 2 cut(s) 119, 571
Bse1I ACTGG 2 cut(s) 325, 523
BseBI CCWGG 1 cut(s) 410
BseGI GGATG 3 cut(s) 150, 489, 517
BseNI ACTGG 2 cut(s) 325, 523
BsePI GCGCGC 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 4 cut(s) 175, 203, 284, 372
BseYI CCCAGC 2 cut(s) 82, 251
BsgI GTGCAG 1 cut(s) 124
Bsh1236I CGCG 2 cut(s) 171, 257
BsmAI GTCTC 3 cut(s) 119, 571, 775
BsmBI CGTCTC 1 cut(s) 775
Bso31I GGTCTC 2 cut(s) 119, 571
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 3 cut(s) 112, 626, 723
BspACI CCGC 6 cut(s) 11, 55, 58, 73, 144, 640
BspFNI CGCG 2 cut(s) 171, 257
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 177
BspTNI GGTCTC 2 cut(s) 119, 571
BsrI ACTGG 2 cut(s) 325, 523
BssHII GCGCGC 1 cut(s) 255
BssMI GATC 3 cut(s) 112, 626, 723
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 778
BstC8I GCNNGC 6 cut(s) 148, 169, 175, 257, 332, 432
BstDEI CTNAG 2 cut(s) 463, 789
BstF5I GGATG 3 cut(s) 150, 489, 517
BstFNI CGCG 2 cut(s) 171, 257
BstH2I RGCGCY 2 cut(s) 89, 247
BstHHI GCGC 5 cut(s) 88, 173, 246, 257, 259
BstKTI GATC 3 cut(s) 115, 629, 726
BstMAI GTCTC 3 cut(s) 119, 571, 775
BstMBI GATC 3 cut(s) 112, 626, 723
BstMWI GCNNNNNNNGC 9 cut(s) 10, 147, 179, 188, 243, 252, 281, 446, 476
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 2 cut(s) 171, 257
BstV1I GCAGC 4 cut(s) 175, 203, 284, 372
BstV2I GAAGAC 1 cut(s) 755
BtgZI GCGATG 1 cut(s) 749
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 3 cut(s) 150, 489, 517
BtsIMutI CAGTG 1 cut(s) 332
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 6 cut(s) 148, 169, 175, 257, 332, 432
CaiI CAGNNNCTG 1 cut(s) 331
CfoI GCGC 5 cut(s) 88, 173, 246, 257, 259
Csp6I GTAC 1 cut(s) 526
CviAII CATG 1 cut(s) 43
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 2 cut(s) 463, 789
DpnI GATC 3 cut(s) 114, 628, 725
DpnII GATC 3 cut(s) 112, 626, 723
Eam1104I CTCTTC 1 cut(s) 778
EarI CTCTTC 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 2 cut(s) 119, 571
Eco47III AGCGCT 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 775
FaeI CATG 1 cut(s) 46
FatI CATG 1 cut(s) 42
FauNDI CATATG 1 cut(s) 507
Fnu4HI GCNGC 6 cut(s) 55, 58, 189, 192, 273, 386
FokI GGATG 3 cut(s) 137, 476, 524
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 6 cut(s) 55, 58, 189, 192, 273, 386
FspBI CTAG 5 cut(s) 174, 227, 338, 405, 617
GlaI GCGC 5 cut(s) 87, 172, 245, 256, 258
GluI GCNGC 6 cut(s) 55, 58, 189, 192, 273, 386
GsaI CCCAGC 2 cut(s) 86, 255
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 2 cut(s) 89, 247
HhaI GCGC 5 cut(s) 88, 173, 246, 257, 259
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 5 cut(s) 86, 171, 244, 255, 257
HinP1I GCGC 5 cut(s) 86, 171, 244, 255, 257
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 5 cut(s) 46, 499, 515, 599, 751
HpaI GTTAAC 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 1 cut(s) 679
Hpy188III TCNNGA 3 cut(s) 124, 611, 665
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 2 cut(s) 113, 188
HpyAV CCTTC 1 cut(s) 549
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 2 cut(s) 414, 591
HpyCH4V TGCA 9 cut(s) 4, 102, 118, 141, 191, 334, 350, 357, 388
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 147, 179, 188, 243, 252, 281, 446, 476
HpyF3I CTNAG 2 cut(s) 463, 789
HpySE526I ACGT 2 cut(s) 414, 591
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 5 cut(s) 86, 171, 244, 255, 257
KspAI GTTAAC 1 cut(s) 289
Kzo9I GATC 3 cut(s) 112, 626, 723
LmnI GCTCC 3 cut(s) 44, 93, 525
Lsp1109I GCAGC 4 cut(s) 175, 203, 284, 372
LweI GCATC 2 cut(s) 159, 721
MaeI CTAG 5 cut(s) 174, 227, 338, 405, 617
MaeII ACGT 2 cut(s) 414, 591
MaeIII GTNAC 3 cut(s) 214, 596, 611
MalI GATC 3 cut(s) 114, 628, 725
MboI GATC 3 cut(s) 112, 626, 723
MboII GAAGA 3 cut(s) 554, 760, 765
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 3 cut(s) 161, 345, 707
MlyI GAGTC 3 cut(s) 493, 593, 745
MnlI CCTC 8 cut(s) 101, 188, 210, 234, 302, 320, 460, 647
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 4 cut(s) 288, 344, 693, 701
MslI CAYNNNNRTG 2 cut(s) 494, 510
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 2 cut(s) 171, 257
MwoI GCNNNNNNNGC 9 cut(s) 10, 147, 179, 188, 243, 252, 281, 446, 476
NdeI CATATG 1 cut(s) 507
NdeII GATC 3 cut(s) 112, 626, 723
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 214, 596, 611
PaqCI CACCTGC 1 cut(s) 270
PauI GCGCGC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 2 cut(s) 46, 515
PkrI GCNGC 6 cut(s) 56, 59, 190, 193, 274, 387
PleI GAGTC 3 cut(s) 493, 593, 745
PpsI GAGTC 3 cut(s) 493, 593, 745
PshBI ATTAAT 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 2 cut(s) 82, 251
PspGI CCWGG 1 cut(s) 408
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 331
PteI GCGCGC 1 cut(s) 255
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 2 cut(s) 494, 510
SaqAI TTAA 4 cut(s) 288, 344, 693, 701
SatI GCNGC 6 cut(s) 55, 58, 189, 192, 273, 386
Sau3AI GATC 3 cut(s) 112, 626, 723
SchI GAGTC 3 cut(s) 493, 593, 745
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 1 cut(s) 310
SetI ASST 9 cut(s) 35, 202, 264, 294, 417, 436, 442, 594, 618
SfaNI GCATC 2 cut(s) 159, 721
SfcI CTRYAG 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 494, 510
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 3 cut(s) 161, 345, 707
SsiI CCGC 6 cut(s) 11, 55, 58, 73, 144, 640
SspMI CTAG 5 cut(s) 174, 227, 338, 405, 617
StyD4I CCNGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 2 cut(s) 417, 594
TaqI TCGA 3 cut(s) 67, 111, 123
TasI AATT 3 cut(s) 161, 345, 707
TauI GCSGC 2 cut(s) 57, 60
TfiI GAWTC 2 cut(s) 46, 515
Tru1I TTAA 4 cut(s) 288, 344, 693, 701
Tru9I TTAA 4 cut(s) 288, 344, 693, 701
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 3 cut(s) 214, 596, 611
TseI GCWGC 4 cut(s) 188, 191, 272, 385
Tsp45I GTSAC 3 cut(s) 214, 596, 611
TspDTI ATGAA 3 cut(s) 551, 555, 765
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 1 cut(s) 332
VspI ATTAAT 1 cut(s) 344
XapI RAATTY 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 5 cut(s) 174, 227, 338, 405, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.