Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001266.1

Orthogroup ID

OG0014876

Physical Location & Seq

Genomic Coordinates Forward (+)

67061 .. 68520

Gene Structure 1460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001266.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ctgttgtctgaagacagtgcctcaactgctgagcagctgcgcttggcatctgccgagctatcacacaacagttataacacatacctattgtctgtgtgtttatcacacaactatgttccaccgttgtctgatttttcatcagacaacggctcactctacaacggtgggacccataatccccgttctgctacgacttccaatagcttaactgaagtcattaaatggcacccgccgcctgaaaacttcgtcaagctcaactttgatgggtcaattgaatcttcaacggttcctttggctgaatgtacagctctaaaggatggcatgttagctgctaagcgattcaacctggaccataatttagtggagggtgactcgtccctaatcatcaactgtgtcaatctcaagtgtgaagctccctggatgctcgtcacctggagtttggttgcagtgtctccctgttttggaactccctgccctgctcaatctttggaagcaaatatagcaaccttagaggcaaataaggtgaaagccatcatcctaatgactcgtcatatggatgattcgctcaagtatgagtgtatgaataaagaagaccccagaaggttgtgggtctcactcgaagaaagatttggcaacgcccgtgactccctgcttcctgacctagaagtgagatggcataacctccgcttctgtgatttcaagtcagttcttgactacaactcggaagcacttcacattaaatcctcaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

250

Amino Acids

27.87

Weight (kDa)

5.24

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014876)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000293.1_g000027 Rmu_sc0000795.1_g000040 Rmu_sc0000946.1_g000036 Rmu_sc0001123.1_g000017 Rmu_sc0001266.1_g000008 Rmu_sc0001986.1_g000024 Rmu_sc0004345.1_g000021 Rmu_sc0004376.1_g000003 Rmu_sc0004988.1_g000028 Rmu_sc0006767.1_g000004 Rmu_sc0006782.1_g000012 Rmu_sc0007109.1_g000015 Rmu_sc0007892.1_g000003 Rmu_sc0009304.1_g000003 Rmu_sc0011631.1_g000003 Rmu_sc0037843.1_g000001 Rmu_ssc0000240.1_g000030

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0000293.1_g000027 Rmu_sc0000795.1_g000040 Rmu_sc0000946.1_g000036 Rmu_sc0001123.1_g000017 Rmu_sc0001266.1_g000008 Rmu_sc0001986.1_g000024 Rmu_sc0004345.1_g000021 Rmu_sc0004376.1_g000003 Rmu_sc0004988.1_g000028 Rmu_sc0006767.1_g000004 Rmu_sc0006782.1_g000012 Rmu_sc0007109.1_g000015 Rmu_sc0007892.1_g000003 Rmu_sc0009304.1_g000003 Rmu_sc0011631.1_g000003 Rmu_sc0037843.1_g000001 Rmu_ssc0000240.1_g000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	225
AciI	CCGC	3 cut(s)	230, 233, 685
AcuI	CTGAAG	2 cut(s)	30, 231
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	4 cut(s)	275, 282, 343, 700
AjnI	CCWGG	3 cut(s)	345, 416, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	7 cut(s)	37, 58, 204, 253, 308, 329, 413
AluI	AGCT	7 cut(s)	37, 58, 204, 253, 308, 329, 413
Alw26I	GTCTC	2 cut(s)	456, 616
ApeKI	GCWGC	3 cut(s)	34, 37, 329
Asp700I	GAANNNNTTC	1 cut(s)	729
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	168, 349
AsuHPI	GGTGA	3 cut(s)	380, 421, 535
AvaII	GGWCC	2 cut(s)	168, 349
BanI	GGYRCC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	18, 597
BbvI	GCAGC	3 cut(s)	24, 46, 316
BccI	CCATC	4 cut(s)	257, 311, 539, 666
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	3 cut(s)	347, 418, 433
BcoDI	GTCTC	2 cut(s)	456, 616
BfaI	CTAG	1 cut(s)	662
BisI	GCNGC	4 cut(s)	35, 38, 233, 330
BlpI	GCTNAGC	2 cut(s)	30, 333
BlsI	GCNGC	4 cut(s)	36, 39, 234, 331
Bme1390I	CCNGG	3 cut(s)	347, 418, 433
Bme18I	GGWCC	2 cut(s)	168, 349
BmgT120I	GGNCC	2 cut(s)	168, 349
BmiI	GGNNCC	4 cut(s)	169, 170, 227, 288
BmrFI	CCNGG	3 cut(s)	347, 418, 433
BmsI	GCATC	2 cut(s)	56, 411
BpiI	GAAGAC	2 cut(s)	18, 597
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	1 cut(s)	454
Bpu1102I	GCTNAGC	2 cut(s)	30, 333
BpuEI	CTTGAG	2 cut(s)	386, 551
BsaI	GGTCTC	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
BseBI	CCWGG	3 cut(s)	347, 418, 433
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	4 cut(s)	322, 426, 534, 562
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	24, 46, 316
BshNI	GGYRCC	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	181, 361
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	2 cut(s)	456, 616
BsmFI	GGGAC	2 cut(s)	181, 361
Bso31I	GGTCTC	1 cut(s)	616
Bsp1407I	TGTACA	1 cut(s)	302
Bsp1720I	GCTNAGC	2 cut(s)	30, 333
BspACI	CCGC	3 cut(s)	230, 233, 685
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	4 cut(s)	169, 170, 227, 288
BspT107I	GGYRCC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	616
BsrGI	TGTACA	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	347, 418, 433
Bst4CI	ACNGT	6 cut(s)	17, 71, 123, 164, 286, 392
BstAUI	TGTACA	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	30, 333, 508
BstF5I	GGATG	4 cut(s)	322, 426, 534, 562
BstHHI	GCGC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	456, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 232, 500
BstNI	CCWGG	3 cut(s)	347, 418, 433
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	3 cut(s)	345, 416, 431
BstV1I	GCAGC	3 cut(s)	24, 46, 316
BstV2I	GAAGAC	2 cut(s)	18, 597
BtsCI	GGATG	4 cut(s)	322, 426, 534, 562
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	22, 453
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	168, 349
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	1 cut(s)	322
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	3 cut(s)	30, 333, 508
Eco31I	GGTCTC	1 cut(s)	616
Eco47I	GGWCC	2 cut(s)	168, 349
Eco57I	CTGAAG	2 cut(s)	30, 231
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	3 cut(s)	345, 416, 431
FaeI	CATG	1 cut(s)	325
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	2 cut(s)	181, 361
FatI	CATG	1 cut(s)	321
FauI	CCCGC	1 cut(s)	237
FauNDI	CATATG	1 cut(s)	552
Fnu4HI	GCNGC	4 cut(s)	35, 38, 233, 330
FokI	GGATG	4 cut(s)	329, 433, 521, 569
Fsp4HI	GCNGC	4 cut(s)	35, 38, 233, 330
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	4 cut(s)	35, 38, 233, 330
GsuI	CTGGAG	1 cut(s)	454
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	6 cut(s)	275, 339, 371, 544, 560, 644
HphI	GGTGA	3 cut(s)	380, 421, 535
Hpy188I	TCNGA	4 cut(s)	10, 130, 142, 724
Hpy188III	TCNNGA	2 cut(s)	656, 710
HpyAV	CCTTC	1 cut(s)	594
HpyCH4III	ACNGT	6 cut(s)	17, 71, 123, 164, 286, 392
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 232, 500
HpyF3I	CTNAG	3 cut(s)	30, 333, 508
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	1 cut(s)	40
KflI	GGGWCCC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	3 cut(s)	24, 46, 316
LweI	GCATC	2 cut(s)	56, 411
MaeI	CTAG	1 cut(s)	662
MaeIII	GTNAC	3 cut(s)	368, 427, 641
MboII	GAAGA	4 cut(s)	23, 270, 602, 632
MfeI	CAATTG	1 cut(s)	270
MluCI	AATT	2 cut(s)	270, 355
MlyI	GAGTC	3 cut(s)	365, 538, 638
MnlI	CCTC	4 cut(s)	31, 358, 505, 692
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	3 cut(s)	206, 219, 738
MslI	CAYNNNNRTG	3 cut(s)	111, 539, 555
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	3 cut(s)	347, 418, 433
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	3 cut(s)	347, 418, 433
MwoI	GCNNNNNNNGC	3 cut(s)	26, 232, 500
NdeI	CATATG	1 cut(s)	552
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	4 cut(s)	169, 170, 227, 288
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	3 cut(s)	368, 427, 641
NspI	RCATGY	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	3 cut(s)	275, 339, 560
PkrI	GCNGC	4 cut(s)	36, 39, 234, 331
PleI	GAGTC	3 cut(s)	365, 538, 638
PpsI	GAGTC	3 cut(s)	365, 538, 638
PpuMI	RGGWCCY	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	345, 416, 431
PspGI	CCWGG	3 cut(s)	345, 416, 431
PspN4I	GGNNCC	4 cut(s)	169, 170, 227, 288
PspPI	GGNCC	2 cut(s)	168, 349
PspPPI	RGGWCCY	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	3 cut(s)	111, 539, 555
SaqAI	TTAA	3 cut(s)	206, 219, 738
SatI	GCNGC	4 cut(s)	35, 38, 233, 330
Sau96I	GGNCC	2 cut(s)	168, 349
SchI	GAGTC	3 cut(s)	365, 538, 638
ScrFI	CCNGG	3 cut(s)	347, 418, 433
SfaNI	GCATC	2 cut(s)	56, 411
SinI	GGWCC	2 cut(s)	168, 349
SmiMI	CAYNNNNRTG	3 cut(s)	111, 539, 555
SmlI	CTYRAG	2 cut(s)	401, 566
SmoI	CTYRAG	2 cut(s)	401, 566
Sse9I	AATT	2 cut(s)	270, 355
SsiI	CCGC	3 cut(s)	230, 233, 685
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	3 cut(s)	345, 416, 431
TaaI	ACNGT	6 cut(s)	17, 71, 123, 164, 286, 392
TaqI	TCGA	1 cut(s)	618
TasI	AATT	2 cut(s)	270, 355
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	3 cut(s)	275, 339, 560
Tru1I	TTAA	3 cut(s)	206, 219, 738
Tru9I	TTAA	3 cut(s)	206, 219, 738
TscAI	CASTG	2 cut(s)	22, 453
TseFI	GTSAC	3 cut(s)	368, 427, 641
TseI	GCWGC	3 cut(s)	34, 37, 329
Tsp45I	GTSAC	3 cut(s)	368, 427, 641
TspDTI	ATGAA	2 cut(s)	126, 596
TspRI	CASTG	2 cut(s)	22, 453
VpaK11BI	GGWCC	2 cut(s)	168, 349
XceI	RCATGY	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.