Rmu_sc0000795.1_g000040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000795.1
OG0014876
Physical Location & Seq
Forward (+)
183814 .. 186077
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000795.1_g000040.1.cds

Sequence Viewer

Length: 621 bp
atggatcatgaagtactgatgcaaagaactaagtttgatcaccttttggctggaaattacaaggaaagtccacggaaatcattgtgtaaaacagttgctgcaaagcagaaaactacagttcagaatcagcattctgggaacagttttgatgaccgattcttgcattcttccaactgcaggttttcagaaaaggctatcgatcctttaatatatgatgttattctcggacaagagccaaagaactgccaggacgtgctaactgttgaacaagctcaagctttggaagtaaagagagcagccttagaaccaaataaggtgaaagccatcatcctaatgactcgtcatatggatgatttgctccagtatgagtgtatgaaagaagaagaccccataaggctgtcggtctcactcaaagaaagatttggcaacgtctgtgactccctacttcctgacctagaagtgagatggcatagcctccgcttctgcgattttaagtcaattcttgaccacaactcagaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgctatgttgattgagaagactctctctctaccttccccgtctctgcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

206

Amino Acids

23.66

Weight (kDa)

6.25

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AciI CCGC 1 cut(s) 478
AclWI GGATC 2 cut(s) 12, 194
AcsI RAATTY 1 cut(s) 545
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 1 cut(s) 266
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 2 cut(s) 272, 278
AluI AGCT 2 cut(s) 272, 278
Alw26I GTCTC 2 cut(s) 409, 615
AlwI GGATC 2 cut(s) 12, 194
AlwNI CAGNNNCTG 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 98, 296
ApoI RAATTY 1 cut(s) 545
Asp700I GAANNNNTTC 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 32, 328
BbsI GAAGAC 2 cut(s) 390, 593
BbvI GCAGC 2 cut(s) 85, 308
BccI CCATC 2 cut(s) 332, 459
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 409, 615
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 2 cut(s) 114, 175
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 2 cut(s) 99, 297
BlsI GCNGC 2 cut(s) 100, 298
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 248
BmgBI CACGTC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 9, 559
BpiI GAAGAC 2 cut(s) 390, 593
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 258
Bsa29I ATCGAT 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 248
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 2 cut(s) 327, 355
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 361
BseXI GCAGC 2 cut(s) 85, 308
BshVI ATCGAT 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 409, 615
BsmBI CGTCTC 1 cut(s) 615
BsmI GAATGC 2 cut(s) 130, 163
Bso31I GGTCTC 1 cut(s) 409
Bsp143I GATC 4 cut(s) 4, 37, 199, 561
BspACI CCGC 1 cut(s) 478
BspCNI CTCAG 1 cut(s) 527
BspDI ATCGAT 1 cut(s) 198
BspHI TCATGA 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 2 cut(s) 12, 194
BspTNI GGTCTC 1 cut(s) 409
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 4 cut(s) 4, 37, 199, 561
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 4 cut(s) 94, 118, 143, 262
BstDEI CTNAG 3 cut(s) 30, 301, 514
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 327, 355
BstKTI GATC 4 cut(s) 7, 40, 202, 564
BstMAI GTCTC 2 cut(s) 409, 615
BstMBI GATC 4 cut(s) 4, 37, 199, 561
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 2 cut(s) 114, 175
BstV1I GCAGC 2 cut(s) 85, 308
BstV2I GAAGAC 2 cut(s) 390, 593
Bsu15I ATCGAT 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 71
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 327, 355
BveI ACCTGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 198
Csp6I GTAC 1 cut(s) 14
CviAII CATG 1 cut(s) 8
CviJI RGCY 9 cut(s) 50, 194, 235, 272, 278, 299, 323, 397, 474
CviKI_1 RGCY 9 cut(s) 50, 194, 235, 272, 278, 299, 323, 397, 474
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 3 cut(s) 30, 301, 514
DpnI GATC 4 cut(s) 6, 39, 201, 563
DpnII GATC 4 cut(s) 4, 37, 199, 561
Eco31I GGTCTC 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 1 cut(s) 11
FatI CATG 1 cut(s) 7
FauNDI CATATG 1 cut(s) 345
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 99, 297
FokI GGATG 2 cut(s) 314, 362
Fsp4HI GCNGC 2 cut(s) 99, 297
FspBI CTAG 1 cut(s) 455
GluI GCNGC 2 cut(s) 99, 297
GsuI CTGGAG 1 cut(s) 344
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 5 cut(s) 124, 156, 337, 437, 589
HphI GGTGA 2 cut(s) 32, 328
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 4 cut(s) 123, 187, 227, 517
Hpy188III TCNNGA 3 cut(s) 8, 449, 503
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 612
HpyCH4III ACNGT 4 cut(s) 94, 118, 143, 262
HpyCH4IV ACGT 2 cut(s) 252, 429
HpyCH4V TGCA 5 cut(s) 22, 101, 163, 177, 616
HpyF3I CTNAG 3 cut(s) 30, 301, 514
HpySE526I ACGT 2 cut(s) 252, 429
Hsp92II CATG 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 4 cut(s) 4, 37, 199, 561
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 7 cut(s) 36, 120, 163, 233, 260, 374, 462
Lsp1109I GCAGC 2 cut(s) 85, 308
LweI GCATC 2 cut(s) 9, 559
MaeI CTAG 1 cut(s) 455
MaeII ACGT 2 cut(s) 252, 429
MaeIII GTNAC 1 cut(s) 434
MalI GATC 4 cut(s) 6, 39, 201, 563
MboI GATC 4 cut(s) 4, 37, 199, 561
MboII GAAGA 4 cut(s) 159, 392, 395, 598
MluCI AATT 3 cut(s) 55, 498, 545
MlyI GAGTC 3 cut(s) 331, 431, 583
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 4 cut(s) 206, 492, 531, 539
MslI CAYNNNNRTG 2 cut(s) 332, 348
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 2 cut(s) 130, 163
MvaI CCWGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 345
NdeII GATC 4 cut(s) 4, 37, 199, 561
NlaIII CATG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 434
PagI TCATGA 1 cut(s) 7
PctI GAATGC 2 cut(s) 130, 163
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 124, 156
PkrI GCNGC 2 cut(s) 100, 298
PleI GAGTC 3 cut(s) 331, 431, 583
PpsI GAGTC 3 cut(s) 331, 431, 583
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PstI CTGCAG 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 332, 348
SaqAI TTAA 4 cut(s) 206, 492, 531, 539
SatI GCNGC 2 cut(s) 99, 297
Sau3AI GATC 4 cut(s) 4, 37, 199, 561
ScaI AGTACT 1 cut(s) 15
SchI GAGTC 3 cut(s) 331, 431, 583
ScrFI CCNGG 1 cut(s) 248
SetI ASST 9 cut(s) 45, 182, 255, 274, 280, 318, 432, 456, 604
SfaNI GCATC 2 cut(s) 9, 559
SfcI CTRYAG 2 cut(s) 114, 175
SmiMI CAYNNNNRTG 2 cut(s) 332, 348
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 55, 498, 545
SsiI CCGC 1 cut(s) 478
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 4 cut(s) 94, 118, 143, 262
TaiI ACGT 2 cut(s) 255, 432
TaqI TCGA 1 cut(s) 198
TaqII GACCGA 2 cut(s) 168, 391
TasI AATT 3 cut(s) 55, 498, 545
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 2 cut(s) 124, 156
Tru1I TTAA 4 cut(s) 206, 492, 531, 539
Tru9I TTAA 4 cut(s) 206, 492, 531, 539
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 2 cut(s) 98, 296
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 24, 389
TspGWI ACGGA 1 cut(s) 88
XapI RAATTY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 1 cut(s) 455
ZrmI AGTACT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.