Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004988.1

Orthogroup ID

OG0014876

Physical Location & Seq

Genomic Coordinates Reverse (-)

102664 .. 104485

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004988.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggttggccataacatcatcgggcagatgatgctgggaaaatattctagtgcttcgttggcggaagagacaagtgttggtggtctgggaggcggccaagattttcagcgaggatttcggaagagaaccaagaccatacataagaagttcgatgaattggtggagaaggtgatcgctgaacatgaagagttgaggaagatgcagaagaaaggcaacactatagaaaaaaaggatgtcaagagctttcttgatatttttcttgatattttggaggtcgaagatctcaagaaaacaatccagaccctcgccgccaacgtcctcccggtcatcctcaactgcctctacgatgccttcggcgaccccaaacccgcagtcaagaaacagtctttgagtctacaccgatttgacatccacccatctcaccaaaggctcaaggacgccgactccggcgtgggggagggtgtcgctacgccattgggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

160

Amino Acids

17.73

Weight (kDa)

8.59

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014876)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000293.1_g000027 Rmu_sc0000795.1_g000040 Rmu_sc0000946.1_g000036 Rmu_sc0001123.1_g000017 Rmu_sc0001266.1_g000008 Rmu_sc0001986.1_g000024 Rmu_sc0004345.1_g000021 Rmu_sc0004376.1_g000003 Rmu_sc0004988.1_g000028 Rmu_sc0006767.1_g000004 Rmu_sc0006782.1_g000012 Rmu_sc0007109.1_g000015 Rmu_sc0007892.1_g000003 Rmu_sc0009304.1_g000003 Rmu_sc0011631.1_g000003 Rmu_sc0037843.1_g000001 Rmu_ssc0000240.1_g000030

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0000293.1_g000027 Rmu_sc0000795.1_g000040 Rmu_sc0000946.1_g000036 Rmu_sc0001123.1_g000017 Rmu_sc0001266.1_g000008 Rmu_sc0001986.1_g000024 Rmu_sc0004345.1_g000021 Rmu_sc0004376.1_g000003 Rmu_sc0004988.1_g000028 Rmu_sc0006767.1_g000004 Rmu_sc0006782.1_g000012 Rmu_sc0007109.1_g000015 Rmu_sc0007892.1_g000003 Rmu_sc0009304.1_g000003 Rmu_sc0011631.1_g000003 Rmu_sc0037843.1_g000001 Rmu_ssc0000240.1_g000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	394
AciI	CCGC	4 cut(s)	62, 93, 309, 369
AcoI	YGGCCR	2 cut(s)	7, 94
AcyI	GRCGYC	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	453
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	62
AoxI	GGCC	2 cut(s)	7, 94
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
Asp700I	GAANNNNTTC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	181, 413
BalI	TGGCCA	1 cut(s)	9
BccI	CCATC	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	2 cut(s)	94, 309
BlsI	GCNGC	2 cut(s)	95, 310
Bme1390I	CCNGG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	3 cut(s)	21, 189, 337
BpuEI	CTTGAG	2 cut(s)	269, 416
BpuMI	CCSGG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
BseGI	GGATG	3 cut(s)	238, 327, 408
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseYI	CCCAGC	1 cut(s)	34
BshFI	GGCC	2 cut(s)	9, 96
BsiSI	CCGG	2 cut(s)	323, 447
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	9, 96
Bsp143I	GATC	2 cut(s)	171, 280
BspACI	CCGC	4 cut(s)	62, 93, 309, 369
BspANI	GGCC	2 cut(s)	9, 96
BssMI	GATC	2 cut(s)	171, 280
BssNI	GRCGYC	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	384
Bst6I	CTCTTC	3 cut(s)	60, 116, 180
BstACI	GRCGYC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstF5I	GGATG	3 cut(s)	238, 327, 408
BstKTI	GATC	2 cut(s)	174, 283
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	171, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 59
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	9, 96
BtsCI	GGATG	3 cut(s)	238, 327, 408
CseI	GACGC	1 cut(s)	446
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	4 cut(s)	9, 96, 243, 430
CviKI_1	RGCY	4 cut(s)	9, 96, 243, 430
DpnI	GATC	2 cut(s)	173, 282
DpnII	GATC	2 cut(s)	171, 280
EaeI	YGGCCR	2 cut(s)	7, 94
Eam1104I	CTCTTC	3 cut(s)	60, 116, 180
EarI	CTCTTC	3 cut(s)	60, 116, 180
EciI	GGCGGA	1 cut(s)	77
FaeI	CATG	1 cut(s)	185
FaiI	YATR	5 cut(s)	12, 137, 141, 183, 221
FatI	CATG	1 cut(s)	181
FauI	CCCGC	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	94, 309
FokI	GGATG	3 cut(s)	245, 314, 395
Fsp4HI	GCNGC	2 cut(s)	94, 309
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	2 cut(s)	94, 309
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	9, 96
HapII	CCGG	2 cut(s)	323, 447
HgaI	GACGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	2 cut(s)	391, 443
HpaII	CCGG	2 cut(s)	323, 447
HphI	GGTGA	2 cut(s)	181, 413
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	6 cut(s)	238, 248, 260, 286, 298, 376
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	160, 361
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 59
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	171, 280
LpnPI	CCDG	5 cut(s)	20, 71, 311, 336, 460
LweI	GCATC	3 cut(s)	21, 189, 337
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	315
MalI	GATC	2 cut(s)	173, 282
MboI	GATC	2 cut(s)	171, 280
MboII	GAAGA	6 cut(s)	77, 133, 197, 208, 217, 290
MflI	RGATCY	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	400, 437
MnlI	CCTC	9 cut(s)	83, 104, 186, 265, 314, 329, 341, 350, 451
Mox20I	TGGCCA	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	9
MspI	CCGG	2 cut(s)	323, 447
MspR9I	CCNGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	31, 59
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	2 cut(s)	171, 280
NlaIII	CATG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	95, 310
PleI	GAGTC	2 cut(s)	399, 437
PpsI	GAGTC	2 cut(s)	399, 437
PspFI	CCCAGC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	280
SatI	GCNGC	2 cut(s)	94, 309
Sau3AI	GATC	2 cut(s)	171, 280
SchI	GAGTC	2 cut(s)	400, 437
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	4 cut(s)	171, 245, 276, 318
SfaNI	GCATC	3 cut(s)	21, 189, 337
SfcI	CTRYAG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	284, 431
SmoI	CTYRAG	2 cut(s)	284, 431
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	4 cut(s)	62, 93, 309, 369
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	384
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	150, 276
TasI	AATT	1 cut(s)	155
TauI	GCSGC	2 cut(s)	96, 311
TspDTI	ATGAA	2 cut(s)	168, 198
XmiI	GTMKAC	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.