Rmu_ssc0000240.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000240.1
OG0014876
Physical Location & Seq
Reverse (-)
123958 .. 124317
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000240.1_g000030.1.cds

Sequence Viewer

Length: 360 bp
atgattcccgagcctagccaggacgtgctaactgttgagcaaactcaagctttgaaggcaaatagagcagccttagaggcaaataaggcggaggccatcatcctaatggctcgtcatatggatgattcgctccagtacaagtgtatgaatgaagaagaccccagaaggctgtgggtctcactcgatgatagatttggcaacgttcgtgactccctgcttcctgacctagaactgagatggcatagcctccgcttctgtgatttcaagttagttcttgactacaactcggaagcacttcgcattaaatcctcaatggaattctgtggtaaagagttcacaaatgcgatgttgattgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

119

Amino Acids

13.85

Weight (kDa)

4.95

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 89, 250
AclI AACGTT 1 cut(s) 201
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 2 cut(s) 55, 265
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 104, 231
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 15, 227
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 8
BmgBI CACGTC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 99, 127
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 8
BspACI CCGC 2 cut(s) 89, 250
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 73, 233
BstF5I GGATG 2 cut(s) 99, 127
BstMAI GTCTC 1 cut(s) 181
BstMWI GCNNNNNNNGC 4 cut(s) 56, 65, 77, 86
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 95
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 2 cut(s) 99, 127
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 8 cut(s) 13, 18, 50, 71, 95, 110, 169, 246
CviKI_1 RGCY 8 cut(s) 13, 18, 50, 71, 95, 110, 169, 246
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 73, 233
EciI GGCGGA 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 18
FaiI YATR 4 cut(s) 117, 119, 146, 243
FauNDI CATATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 86, 134
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 15, 227
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 3 cut(s) 4, 125, 209
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 4 cut(s) 8, 206, 221, 275
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 2 cut(s) 49, 159
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 2 cut(s) 24, 201
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 65, 77, 86
HpyF3I CTNAG 2 cut(s) 73, 233
HpySE526I ACGT 2 cut(s) 24, 201
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 6 cut(s) 5, 32, 146, 175, 227, 234
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 2 cut(s) 15, 227
MaeII ACGT 2 cut(s) 24, 201
MaeIII GTNAC 1 cut(s) 206
MboII GAAGA 2 cut(s) 164, 167
MluCI AATT 1 cut(s) 317
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 4 cut(s) 70, 85, 257, 319
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 104, 120
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 56, 65, 77, 86
NdeI CATATG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 4, 125
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp1406I AACGTT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 2 cut(s) 104, 120
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 69
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 20
SetI ASST 4 cut(s) 27, 52, 204, 228
SmiMI CAYNNNNRTG 2 cut(s) 104, 120
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 1 cut(s) 317
SsiI CCGC 2 cut(s) 89, 250
SspMI CTAG 2 cut(s) 15, 227
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 2 cut(s) 27, 204
TaqI TCGA 1 cut(s) 183
TasI AATT 1 cut(s) 317
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 2 cut(s) 4, 125
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 161, 165
XapI RAATTY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 15, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.