Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000469.1

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Forward (+)

72796 .. 74166

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000469.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atggaagccgaagctcaagaatcgagcccccaaaacgacgctgtcatcacctcattctgcgagatcacctccgcctccaaacaagaagccctcttcttcctcgaatcccacaattacgaccttgacgccgccgtttccactttcttggacaacgaaaacgccgccgctgacgatgacgccgccgctgtcaccgtcaccaacccggtccagccctcccactcgctctcgccgtctccgtcacactcgccctcccagtcgcccatgcgctctcgctccccggcgccagctctgtctcgccaggcctaccagctccggtccaaacgcgccgcctccgggaccagcaaggaggacaacaagccgccggctgcgcgtacacgtggcggcattagcacgctttctgatctgaatcggcttccggtgaagaatgggtctgacagtgactccgatgagcccaacgagtactacactggtggcgagaaaagtggtatgcttgtccaagaccctaccagaggcgggggtgacgtggattcaattttcactcaagccagacagtttgcacaaggacctctggaaccttcgtcaagctcaaaaagttttactggaacagctagaacacttacaggagagaccgttccaactgctgcacctcagccacctgagtccatcaatcacaccattactttctggaggaatggcttttccattacttccaagaaggctgcatttgcaggatcatccagcctccgcagcggaccgtcatctatggaaaagccattcctccagaaagtaatggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

265

Amino Acids

28.11

Weight (kDa)

5.29

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	2 cut(s)	324, 370
AclWI	GGATC	1 cut(s)	739
AcvI	CACGTG	1 cut(s)	377
AcyI	GRCGYC	3 cut(s)	126, 177, 281
AfaI	GTAC	2 cut(s)	373, 461
AfiI	CCNNNNNNNGG	3 cut(s)	333, 509, 513
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	531
AjiI	CACGTC	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	297
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
AluBI	AGCT	5 cut(s)	14, 287, 310, 585, 608
AluI	AGCT	5 cut(s)	14, 287, 310, 585, 608
Alw26I	GTCTC	3 cut(s)	237, 297, 620
AlwI	GGATC	1 cut(s)	739
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	4 cut(s)	365, 641, 719, 747
AspLEI	GCGC	4 cut(s)	267, 283, 326, 370
AspS9I	GGNCC	5 cut(s)	205, 315, 336, 563, 752
AsuC2I	CCSGG	3 cut(s)	203, 278, 334
AsuHPI	GGTGA	6 cut(s)	40, 58, 181, 187, 430, 530
AvaII	GGWCC	5 cut(s)	205, 315, 336, 563, 752
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	29, 453
BbrPI	CACGTG	1 cut(s)	377
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	4 cut(s)	352, 628, 706, 759
BccI	CCATC	1 cut(s)	671
BceAI	ACGGC	2 cut(s)	116, 214
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	3 cut(s)	203, 278, 334
BcoDI	GTCTC	3 cut(s)	237, 297, 620
BfaI	CTAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	284
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	4 cut(s)	203, 278, 299, 334
Bme18I	GGWCC	5 cut(s)	205, 315, 336, 563, 752
BmgBI	CACGTC	1 cut(s)	523
BmgT120I	GGNCC	5 cut(s)	205, 315, 336, 563, 752
BmiI	GGNNCC	3 cut(s)	282, 337, 573
BmrFI	CCNGG	4 cut(s)	203, 278, 299, 334
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	2 cut(s)	706, 764
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	3 cut(s)	203, 278, 334
BsaAI	YACGTR	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	3 cut(s)	126, 177, 281
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	312, 415
BsaXI	ACNNNNNCTCC	6 cut(s)	233, 263, 425, 455, 615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	333, 509, 513
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	3 cut(s)	253, 472, 604
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	734
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	333, 509, 513
BseMII	CTCAG	2 cut(s)	648, 662
BseNI	ACTGG	3 cut(s)	253, 472, 604
BseXI	GCAGC	4 cut(s)	352, 628, 706, 759
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	2 cut(s)	324, 370
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	280
BsiSI	CCGG	6 cut(s)	203, 278, 313, 333, 362, 416
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	3 cut(s)	333, 509, 513
BsmAI	GTCTC	3 cut(s)	237, 297, 620
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	29, 453
Bsp143I	GATC	3 cut(s)	63, 400, 731
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	649, 661
BspFNI	CGCG	2 cut(s)	324, 370
BspLI	GGNNCC	3 cut(s)	282, 337, 573
BspPI	GGATC	1 cut(s)	739
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	253, 472, 604
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	63, 400, 731
BssNI	GRCGYC	3 cut(s)	126, 177, 281
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	5 cut(s)	193, 437, 552, 631, 756
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	3 cut(s)	126, 177, 281
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	285, 363, 392
BstDEI	CTNAG	2 cut(s)	648, 657
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	734
BstFNI	CGCG	2 cut(s)	324, 370
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	4 cut(s)	267, 283, 326, 370
BstKTI	GATC	3 cut(s)	66, 403, 734
BstMAI	GTCTC	3 cut(s)	237, 297, 620
BstMBI	GATC	3 cut(s)	63, 400, 731
BstMWI	GCNNNNNNNGC	4 cut(s)	367, 387, 725, 747
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	4 cut(s)	201, 276, 297, 332
BstUI	CGCG	2 cut(s)	324, 370
BstV1I	GCAGC	4 cut(s)	352, 628, 706, 759
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	302
BtrI	CACGTC	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	734
BtsIMutI	CAGTG	2 cut(s)	442, 465
Cac8I	GCNNGC	3 cut(s)	285, 363, 392
CfoI	GCGC	4 cut(s)	267, 283, 326, 370
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	5 cut(s)	205, 315, 336, 563, 752
CpoI	CGGWCCG	1 cut(s)	752
CseI	GACGC	3 cut(s)	47, 134, 185
Csp6I	GTAC	2 cut(s)	372, 460
CspI	CGGWCCG	1 cut(s)	752
CviAII	CATG	1 cut(s)	262
CviQI	GTAC	2 cut(s)	372, 460
DdeI	CTNAG	2 cut(s)	648, 657
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	3 cut(s)	65, 402, 733
DpnII	GATC	3 cut(s)	63, 400, 731
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	2 cut(s)	29, 453
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	5 cut(s)	205, 315, 336, 563, 752
Eco72I	CACGTG	1 cut(s)	377
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	29, 453
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	1 cut(s)	265
FaiI	YATR	3 cut(s)	263, 488, 764
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	1 cut(s)	261
FauI	CCCGC	1 cut(s)	506
FokI	GGATG	1 cut(s)	721
FriOI	GRGCYC	2 cut(s)	29, 453
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	4 cut(s)	266, 282, 325, 369
GsuI	CTGGAG	2 cut(s)	706, 764
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	6 cut(s)	203, 278, 313, 333, 362, 416
HgaI	GACGC	3 cut(s)	47, 134, 185
HhaI	GCGC	4 cut(s)	267, 283, 326, 370
Hin1I	GRCGYC	3 cut(s)	126, 177, 281
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	4 cut(s)	265, 281, 324, 368
HinP1I	GCGC	4 cut(s)	265, 281, 324, 368
HinfI	GANTC	6 cut(s)	20, 104, 406, 440, 527, 659
HpaII	CCGG	6 cut(s)	203, 278, 313, 333, 362, 416
HphI	GGTGA	6 cut(s)	40, 58, 181, 187, 430, 530
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	4 cut(s)	400, 405, 433, 445
Hpy188III	TCNNGA	4 cut(s)	17, 569, 685, 781
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	585, 709
HpyCH4III	ACNGT	5 cut(s)	193, 437, 552, 631, 756
HpyCH4IV	ACGT	2 cut(s)	376, 522
HpyCH4V	TGCA	4 cut(s)	557, 644, 722, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	367, 387, 725, 747
HpyF3I	CTNAG	2 cut(s)	648, 657
HpySE526I	ACGT	2 cut(s)	376, 522
Hsp92I	GRCGYC	3 cut(s)	126, 177, 281
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	4 cut(s)	265, 281, 324, 368
KasI	GGCGCC	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	63, 400, 731
LmnI	GCTCC	2 cut(s)	278, 315
Lsp1109I	GCAGC	4 cut(s)	352, 628, 706, 759
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	2 cut(s)	376, 522
MaeIII	GTNAC	5 cut(s)	187, 193, 237, 437, 518
MalI	GATC	3 cut(s)	65, 402, 733
MboI	GATC	3 cut(s)	63, 400, 731
MboII	GAAGA	3 cut(s)	85, 88, 433
MhlI	GDGCHC	2 cut(s)	29, 453
MluCI	AATT	2 cut(s)	112, 531
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	434, 668
MmeI	TCCRAC	1 cut(s)	659
MroNI	GCCGGC	1 cut(s)	361
MspA1I	CMGCKG	3 cut(s)	167, 185, 750
MspI	CCGG	6 cut(s)	203, 278, 313, 333, 362, 416
MspR9I	CCNGG	4 cut(s)	203, 278, 299, 334
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	2 cut(s)	324, 370
MwoI	GCNNNNNNNGC	4 cut(s)	367, 387, 725, 747
NaeI	GCCGGC	1 cut(s)	363
NarI	GGCGCC	1 cut(s)	281
NciI	CCSGG	3 cut(s)	203, 278, 334
NdeII	GATC	3 cut(s)	63, 400, 731
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	3 cut(s)	282, 337, 573
NmuCI	GTSAC	5 cut(s)	187, 193, 237, 437, 518
PceI	AGGCCT	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	2 cut(s)	227, 233
PdiI	GCCGGC	1 cut(s)	363
PfeI	GAWTC	4 cut(s)	20, 104, 406, 527
PflFI	GACNNNGTC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	332
PleI	GAGTC	2 cut(s)	434, 667
PluTI	GGCGCC	1 cut(s)	284
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	2 cut(s)	434, 667
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	297
PspCI	CACGTG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	282, 337, 573
PspPI	GGNCC	5 cut(s)	205, 315, 336, 563, 752
PspPPI	RGGWCCY	1 cut(s)	563
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	373, 461
RsaNI	GTAC	2 cut(s)	372, 460
Rsr2I	CGGWCCG	1 cut(s)	752
RsrII	CGGWCCG	1 cut(s)	752
Sau3AI	GATC	3 cut(s)	63, 400, 731
Sau96I	GGNCC	5 cut(s)	205, 315, 336, 563, 752
ScaI	AGTACT	1 cut(s)	461
SchI	GAGTC	2 cut(s)	434, 668
ScrFI	CCNGG	4 cut(s)	203, 278, 299, 334
SduI	GDGCHC	2 cut(s)	29, 453
SfoI	GGCGCC	1 cut(s)	282
SinI	GGWCC	5 cut(s)	205, 315, 336, 563, 752
SmlI	CTYRAG	2 cut(s)	15, 540
SmoI	CTYRAG	2 cut(s)	15, 540
Sse9I	AATT	2 cut(s)	112, 531
SseBI	AGGCCT	1 cut(s)	302
SspDI	GGCGCC	1 cut(s)	280
SspMI	CTAG	1 cut(s)	609
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	4 cut(s)	201, 276, 297, 332
TaaI	ACNGT	5 cut(s)	193, 437, 552, 631, 756
TaiI	ACGT	2 cut(s)	379, 525
TaqI	TCGA	2 cut(s)	23, 102
TasI	AATT	2 cut(s)	112, 531
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	8 cut(s)	131, 164, 167, 182, 185, 329, 361, 384
TfiI	GAWTC	4 cut(s)	20, 104, 406, 527
TscAI	CASTG	2 cut(s)	442, 472
TseFI	GTSAC	5 cut(s)	187, 193, 237, 437, 518
TseI	GCWGC	4 cut(s)	365, 641, 719, 747
Tsp45I	GTSAC	5 cut(s)	187, 193, 237, 437, 518
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	442, 472
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	5 cut(s)	205, 315, 336, 563, 752
XagI	CCTNNNNNAGG	1 cut(s)	507
XspI	CTAG	1 cut(s)	609
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.