Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Forward (+)

40117217 .. 40117866

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG316000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAAGCCGAAGCTCAAGAATCGAGCCCCCAAAACGACGCCGTCATCACCTCCTTCTGCGAGATCACCTCCACCTCCAAACAAGAAGCCCTCTTCTTCCTCGAATTCCACAATTACGACCCCGACGCCGCCGTTTCCACTTTCTTGGACAACGAAAACGCCGCCACCGCCGTCACCGTCACCAACTCGGTCCAGCCCTCCCACTCGCTCTCGCCGTCTCCGTCACACTCGCCCAAGTACTCGCCCTCCCAGTCGCCCACGCGCTCTCGCAAACCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

93

Amino Acids

10.06

Weight (kDa)

4.73

Isoelectric Point (pI)

80.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_4	PF14555	13 - 53	5.3e-09	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	262
AciI	CCGC	3 cut(s)	129, 162, 168
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	2 cut(s)	39, 126
AfaI	GTAC	1 cut(s)	239
AluBI	AGCT	2 cut(s)	14, 279
AluI	AGCT	2 cut(s)	14, 279
Alw26I	GTCTC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	4 cut(s)	40, 58, 166, 172
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	29
BceAI	ACGGC	4 cut(s)	26, 116, 155, 199
BcoDI	GTCTC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	129, 162
BlsI	GCNGC	2 cut(s)	130, 163
BmcAI	AGTACT	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BsaHI	GRCGYC	2 cut(s)	39, 126
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bse1I	ACTGG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	222
BsmBI	CGTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	3 cut(s)	129, 162, 168
BspFNI	CGCG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	2 cut(s)	39, 126
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	2 cut(s)	39, 126
BstFNI	CGCG	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 276
BstUI	CGCG	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	2 cut(s)	47, 134
Csp6I	GTAC	1 cut(s)	238
CviJI	RGCY	6 cut(s)	8, 14, 27, 89, 196, 279
CviKI_1	RGCY	6 cut(s)	8, 14, 27, 89, 196, 279
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	129, 162
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	129, 162
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	2 cut(s)	129, 162
HgaI	GACGC	2 cut(s)	47, 134
HhaI	GCGC	1 cut(s)	264
Hin1I	GRCGYC	2 cut(s)	39, 126
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	4 cut(s)	40, 58, 166, 172
Hpy188III	TCNNGA	1 cut(s)	17
Hpy99I	CGWCG	2 cut(s)	41, 128
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 276
Hsp92I	GRCGYC	2 cut(s)	39, 126
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	2 cut(s)	206, 263
MaeIII	GTNAC	3 cut(s)	172, 178, 222
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	85, 88
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	104, 112
MnlI	CCTC	7 cut(s)	61, 79, 85, 101, 110, 208, 256
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	167, 276
NdeII	GATC	1 cut(s)	63
NmuCI	GTSAC	3 cut(s)	172, 178, 222
PcsI	WCGNNNNNNNCGW	2 cut(s)	212, 218
PfeI	GAWTC	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	130, 163
PspPI	GGNCC	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SatI	GCNGC	2 cut(s)	129, 162
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	5 cut(s)	16, 53, 71, 77, 281
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	104, 112
SsiI	CCGC	3 cut(s)	129, 162, 168
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	23, 102
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	104, 112
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	131, 164
TfiI	GAWTC	1 cut(s)	20
TseFI	GTSAC	3 cut(s)	172, 178, 222
Tsp45I	GTSAC	3 cut(s)	172, 178, 222
TspGWI	ACGGA	1 cut(s)	210
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	104
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.