Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Reverse (-)

32388110 .. 32391630

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAAGCCGAAGCTCAAGAATCGAGCCCCCAAAACGATGCCGTCATCACCTCCTTCTGCGAGATCACCTCCACCTCCAAACAAGAAGCCCTCTTCTTCCTCGAATTCCACAATTACGACCTCGACGCCGCCGTTTCCACTTTCTTGGACAACGAAAACGCCACCGCTGACGACGACGCCGCCGCCGTCACCGTCACCAACCCGGTCCAGCCCTCCCACTCGCTCTCGCCGTCTCCGTCACACTCGCTCTCGCCGTCTCCGTCACACTCGCCCTCCCAGTCGCCCAAGTGCTCTCGCTCCCCCAAGGAGGACAACAAGCCGCCGGCTGCGCGTACACGTGGCGGCATTCGCACGCTTTCCGATCTGAATCGGCGTCCGGTGAAGGATGGGTCTGACAGTGACTCCGATGAGCCCAACGAGTACTACACTGGTGGCGAGAAAAGTGGTATGCTTGTCCAAGACCCCACCAGAGGCGGGGGTGACGTGGATTCAATTTTCACTCAAGCCAGACAGTTTGCACAAGGACCTCTGGAACCTTCGTCAAGCTCAAAAAGTTTTACTGGAACAGCTAGAACACTTACAGGAGAGACCGTTCCAACTGCTGCACCTCAGCCACCTGAGTCCATCAATCACACCATTACTTTCTGGAGGAATGGCTTTTCCATAGATGACGGTCCGCTGCGGAGGCTGGATGATCCTGCAAATGCAGCCTTCTTGGAAACTAACTGCTTATTGGAATGTCAGAAACCCTTGTGTGGTAGGAATCAAACTGGTATATTGTTAAGTGGGGCAGCTCCCAATGGTCTATTAGGGCTTGGTATGGATGATGTATCCATTCCTAGCATGTTAGCAAAACAGGGACTTGCTTCAAATTCTTTTTCCAAGTGTTTTGGAATTAACGGAAGTGGTAGGATCAGATTTGGTGATAATGGAAGTGACCAACCAGAAACACCATTCTATGTCAGAGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

324

Amino Acids

34.53

Weight (kDa)

4.73

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_4	PF14555	13 - 53	4.3e-10	UBA-like domain
SEP	PF08059	213 - 240	3.9e-11	SEP domain
TAXi_N	PF14543	252 - 309	8.2e-07	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	331
AciI	CCGC	9 cut(s)	129, 165, 180, 183, 320, 342, 474, 677, 682
AclWI	GGATC	2 cut(s)	689, 920
AcsI	RAATTY	2 cut(s)	104, 871
AcvI	CACGTG	1 cut(s)	338
AcyI	GRCGYC	3 cut(s)	126, 177, 373
AfaI	GTAC	2 cut(s)	334, 422
AfiI	CCNNNNNNNGG	4 cut(s)	307, 470, 474, 755
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	492, 870
AjiI	CACGTC	1 cut(s)	484
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	4 cut(s)	14, 546, 569, 794
AluI	AGCT	4 cut(s)	14, 546, 569, 794
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	3 cut(s)	237, 261, 581
AlwI	GGATC	2 cut(s)	689, 920
ApeKI	GCWGC	5 cut(s)	326, 602, 679, 707, 791
ApoI	RAATTY	2 cut(s)	104, 871
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	205, 524, 674
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	7 cut(s)	40, 58, 181, 187, 391, 491, 935
AvaII	GGWCC	3 cut(s)	205, 524, 674
BanII	GRGCYC	2 cut(s)	29, 414
BbrPI	CACGTG	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	5 cut(s)	313, 589, 666, 719, 803
BccI	CCATC	2 cut(s)	380, 632
BceAI	ACGGC	5 cut(s)	26, 116, 170, 214, 238
BciVI	GTATCC	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	3 cut(s)	237, 261, 581
BfaI	CTAG	2 cut(s)	570, 840
BfuI	GTATCC	1 cut(s)	841
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	3 cut(s)	205, 524, 674
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	3 cut(s)	205, 524, 674
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	667
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	3 cut(s)	126, 177, 373
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	6 cut(s)	257, 287, 386, 416, 576, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 470, 474, 755
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	4 cut(s)	277, 433, 565, 775
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	3 cut(s)	391, 697, 829
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	4 cut(s)	307, 470, 474, 755
BseMII	CTCAG	2 cut(s)	609, 623
BseNI	ACTGG	4 cut(s)	277, 433, 565, 775
BseXI	GCAGC	5 cut(s)	313, 589, 666, 719, 803
BsgI	GTGCAG	1 cut(s)	588
Bsh1236I	CGCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	203, 323, 377
BslFI	GGGAC	1 cut(s)	873
BslI	CCNNNNNNNGG	4 cut(s)	307, 470, 474, 755
BsmAI	GTCTC	3 cut(s)	237, 261, 581
BsmBI	CGTCTC	2 cut(s)	237, 261
BsmFI	GGGAC	1 cut(s)	873
BsmI	GAATGC	1 cut(s)	345
Bso31I	GGTCTC	1 cut(s)	581
Bsp1286I	GDGCHC	3 cut(s)	29, 293, 414
Bsp143I	GATC	4 cut(s)	63, 361, 694, 912
BspACI	CCGC	9 cut(s)	129, 165, 180, 183, 320, 342, 474, 677, 682
BspCNI	CTCAG	2 cut(s)	610, 622
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	689, 920
BspTNI	GGTCTC	1 cut(s)	581
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	4 cut(s)	277, 433, 565, 775
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	63, 361, 694, 912
BssNI	GRCGYC	3 cut(s)	126, 177, 373
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	5 cut(s)	193, 398, 513, 592, 674
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	3 cut(s)	126, 177, 373
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	324, 353
BstDEI	CTNAG	2 cut(s)	609, 618
BstF5I	GGATG	3 cut(s)	391, 697, 829
BstFNI	CGCG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	4 cut(s)	66, 364, 697, 915
BstMAI	GTCTC	3 cut(s)	237, 261, 581
BstMBI	GATC	4 cut(s)	63, 361, 694, 912
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 348, 685, 707
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	5 cut(s)	313, 589, 666, 719, 803
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	841
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	391, 697, 829
BtsIMutI	CAGTG	2 cut(s)	403, 426
Cac8I	GCNNGC	2 cut(s)	324, 353
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	3 cut(s)	205, 524, 674
CpoI	CGGWCCG	1 cut(s)	674
CseI	GACGC	3 cut(s)	134, 185, 362
Csp6I	GTAC	2 cut(s)	333, 421
CspI	CGGWCCG	1 cut(s)	674
CviAII	CATG	1 cut(s)	844
CviQI	GTAC	2 cut(s)	333, 421
DdeI	CTNAG	2 cut(s)	609, 618
DpnI	GATC	4 cut(s)	65, 363, 696, 914
DpnII	GATC	4 cut(s)	63, 361, 694, 912
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	29, 414
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	3 cut(s)	205, 524, 674
Eco72I	CACGTG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	29, 414
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	2 cut(s)	237, 261
FaeI	CATG	1 cut(s)	847
FaiI	YATR	6 cut(s)	449, 665, 776, 821, 845, 960
FaqI	GGGAC	1 cut(s)	873
FatI	CATG	1 cut(s)	843
FauI	CCCGC	1 cut(s)	467
FokI	GGATG	3 cut(s)	398, 704, 836
FriOI	GRGCYC	2 cut(s)	29, 414
FspBI	CTAG	2 cut(s)	570, 840
GlaI	GCGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	667
HapII	CCGG	3 cut(s)	203, 323, 377
HgaI	GACGC	3 cut(s)	134, 185, 362
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	3 cut(s)	126, 177, 373
Hin1II	CATG	1 cut(s)	847
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	6 cut(s)	20, 367, 401, 488, 620, 763
HpaII	CCGG	3 cut(s)	203, 323, 377
HphI	GGTGA	7 cut(s)	40, 58, 181, 187, 391, 491, 935
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	7 cut(s)	361, 366, 394, 406, 744, 917, 965
Hpy188III	TCNNGA	3 cut(s)	17, 530, 646
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	3 cut(s)	128, 176, 179
HpyAV	CCTTC	4 cut(s)	64, 376, 546, 721
HpyCH4III	ACNGT	5 cut(s)	193, 398, 513, 592, 674
HpyCH4IV	ACGT	2 cut(s)	337, 483
HpyCH4V	TGCA	4 cut(s)	518, 605, 701, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 348, 685, 707
HpyF3I	CTNAG	2 cut(s)	609, 618
HpySE526I	ACGT	2 cut(s)	337, 483
Hsp92I	GRCGYC	3 cut(s)	126, 177, 373
Hsp92II	CATG	1 cut(s)	847
HspAI	GCGC	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	63, 361, 694, 912
LmnI	GCTCC	2 cut(s)	302, 799
Lsp1109I	GCAGC	5 cut(s)	313, 589, 666, 719, 803
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	570, 840
MaeII	ACGT	2 cut(s)	337, 483
MaeIII	GTNAC	7 cut(s)	187, 193, 237, 261, 398, 479, 935
MalI	GATC	4 cut(s)	65, 363, 696, 914
MboI	GATC	4 cut(s)	63, 361, 694, 912
MboII	GAAGA	2 cut(s)	85, 88
MhlI	GDGCHC	3 cut(s)	29, 293, 414
MluCI	AATT	5 cut(s)	104, 112, 492, 871, 894
MlyI	GAGTC	2 cut(s)	395, 629
MmeI	TCCRAC	1 cut(s)	620
MroNI	GCCGGC	1 cut(s)	322
MseI	TTAA	2 cut(s)	782, 897
MspA1I	CMGCKG	2 cut(s)	167, 679
MspI	CCGG	3 cut(s)	203, 323, 377
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	345
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	4 cut(s)	328, 348, 685, 707
NaeI	GCCGGC	1 cut(s)	324
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	4 cut(s)	63, 361, 694, 912
NgoMIV	GCCGGC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	847
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	7 cut(s)	187, 193, 237, 261, 398, 479, 935
NspI	RCATGY	1 cut(s)	847
PcsI	WCGNNNNNNNCGW	6 cut(s)	129, 183, 227, 233, 251, 257
PctI	GAATGC	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	324
PfeI	GAWTC	4 cut(s)	20, 367, 488, 763
PleI	GAGTC	2 cut(s)	395, 628
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	2 cut(s)	395, 628
Ppu21I	YACGTR	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	524
PspCI	CACGTG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	3 cut(s)	205, 524, 674
PspPPI	RGGWCCY	1 cut(s)	524
RsaI	GTAC	2 cut(s)	334, 422
RsaNI	GTAC	2 cut(s)	333, 421
Rsr2I	CGGWCCG	1 cut(s)	674
RsrII	CGGWCCG	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	782, 897
Sau3AI	GATC	4 cut(s)	63, 361, 694, 912
Sau96I	GGNCC	3 cut(s)	205, 524, 674
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	2 cut(s)	395, 629
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	3 cut(s)	29, 293, 414
SfaNI	GCATC	1 cut(s)	28
SinI	GGWCC	3 cut(s)	205, 524, 674
SmlI	CTYRAG	2 cut(s)	15, 501
SmoI	CTYRAG	2 cut(s)	15, 501
Sse9I	AATT	5 cut(s)	104, 112, 492, 871, 894
SsiI	CCGC	9 cut(s)	129, 165, 180, 183, 320, 342, 474, 677, 682
SspMI	CTAG	2 cut(s)	570, 840
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	5 cut(s)	193, 398, 513, 592, 674
TaiI	ACGT	2 cut(s)	340, 486
TaqI	TCGA	3 cut(s)	23, 102, 123
TasI	AATT	5 cut(s)	104, 112, 492, 871, 894
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	5 cut(s)	131, 182, 185, 322, 345
TfiI	GAWTC	4 cut(s)	20, 367, 488, 763
Tru1I	TTAA	2 cut(s)	782, 897
Tru9I	TTAA	2 cut(s)	782, 897
TscAI	CASTG	2 cut(s)	403, 433
TseFI	GTSAC	7 cut(s)	187, 193, 237, 261, 398, 479, 935
TseI	GCWGC	5 cut(s)	326, 602, 679, 707, 791
Tsp45I	GTSAC	7 cut(s)	187, 193, 237, 261, 398, 479, 935
TspGWI	ACGGA	3 cut(s)	225, 249, 915
TspRI	CASTG	2 cut(s)	403, 433
VpaK11BI	GGWCC	3 cut(s)	205, 524, 674
XapI	RAATTY	2 cut(s)	104, 871
XceI	RCATGY	1 cut(s)	847
XspI	CTAG	2 cut(s)	570, 840
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.