Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018496.1

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 290

Gene Structure 290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018496.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 290 bp

aacaagaagccctcttcttcctcgaatcccacaattacgacctcgacgccgccgtttccactttcttggacaacgaaaacgtcgccgctgatgacgacgctgctgcagtcaccgtcaccaaccaggtccagccctcccactcgctctcgccgtctccgtcacactcgcccgagtactcgccctcccagtcgcccatgcgctctcgagccatgaattccgaccaccttggacaacccataccagccggtgaccgtgtcactcgacctcaatttgctggacagagttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

95

Amino Acids

10.2

Weight (kDa)

4.49

Isoelectric Point (pI)

73.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 86
AcsI	RAATTY	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	158
Ama87I	CYCGRG	2 cut(s)	169, 203
ApeKI	GCWGC	2 cut(s)	100, 103
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	3 cut(s)	102, 108, 259
AvaI	CYCGRG	2 cut(s)	169, 203
AvaII	GGWCC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	87, 90
BceAI	ACGGC	2 cut(s)	37, 135
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	104
BisI	GCNGC	4 cut(s)	50, 86, 101, 104
BlsI	GCNGC	4 cut(s)	51, 87, 102, 105
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	2 cut(s)	169, 203
BmgT120I	GGNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	87, 90
BsiHKCI	CYCGRG	2 cut(s)	169, 203
BsiSI	CCGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsoBI	CYCGRG	2 cut(s)	169, 203
BspACI	CCGC	2 cut(s)	50, 86
BspMAI	CTGCAG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	114, 253
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	200
BstMAI	GTCTC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	124
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	87, 90
BstXI	CCANNNNNNTGG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	126
CseI	GACGC	2 cut(s)	55, 106
CsiI	ACCWGGT	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	2 cut(s)	195, 210
CviJI	RGCY	4 cut(s)	10, 132, 208, 244
CviKI_1	RGCY	4 cut(s)	10, 132, 208, 244
CviQI	GTAC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	169, 203
Eco91I	GGTNACC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	198, 213
FaiI	YATR	3 cut(s)	196, 211, 238
FatI	CATG	2 cut(s)	194, 209
Fnu4HI	GCNGC	4 cut(s)	50, 86, 101, 104
Fsp4HI	GCNGC	4 cut(s)	50, 86, 101, 104
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	4 cut(s)	50, 86, 101, 104
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	2 cut(s)	55, 106
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	198, 213
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	3 cut(s)	102, 108, 259
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	1 cut(s)	203
Hpy99I	CGWCG	3 cut(s)	49, 85, 100
HpyCH4III	ACNGT	2 cut(s)	114, 253
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	198, 213
HspAI	GCGC	1 cut(s)	198
LpnPI	CCDG	7 cut(s)	109, 136, 142, 199, 254, 258, 260
Lsp1109I	GCAGC	2 cut(s)	87, 90
MabI	ACCWGGT	1 cut(s)	122
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	5 cut(s)	108, 114, 158, 247, 255
MboII	GAAGA	2 cut(s)	6, 9
MluCI	AATT	3 cut(s)	33, 213, 268
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	22, 31, 52, 144, 192, 275
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
NlaIII	CATG	2 cut(s)	198, 213
NmuCI	GTSAC	5 cut(s)	108, 114, 158, 247, 255
PaeR7I	CTCGAG	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	3 cut(s)	50, 148, 154
PfeI	GAWTC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	51, 87, 102, 105
Psp6I	CCWGG	1 cut(s)	122
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	108
PsyI	GACNNNGTC	1 cut(s)	253
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SatI	GCNGC	4 cut(s)	50, 86, 101, 104
Sau96I	GGNCC	1 cut(s)	126
ScaI	AGTACT	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	5 cut(s)	44, 83, 128, 227, 267
SexAI	ACCWGGT	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	104
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	126
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	33, 213, 268
SsiI	CCGC	2 cut(s)	50, 86
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	114, 253
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	4 cut(s)	23, 44, 204, 261
TasI	AATT	3 cut(s)	33, 213, 268
TatI	WGTACW	1 cut(s)	173
TauI	GCSGC	2 cut(s)	52, 88
TfiI	GAWTC	1 cut(s)	25
TseFI	GTSAC	5 cut(s)	108, 114, 158, 247, 255
TseI	GCWGC	2 cut(s)	100, 103
Tsp45I	GTSAC	5 cut(s)	108, 114, 158, 247, 255
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	213
XhoI	CTCGAG	1 cut(s)	203
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.