Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004269.1

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Reverse (-)

760 .. 1044

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004269.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atggaagccgaagctcaagaatcgtgcccccaaaacgacgctgtcatcacctccttctgcgagatcacctacgcctccaaacaagaagccctcttcttcctcgaatcccacaattacgacctcgacgccgccgtttccactttcttgtacaacgaaaacgccgccgccgtcaccgtcaccaacccggtccagccctcccactcgctctcgccgtctccatcacacttgcccgagtactcgccctcccagtcgacccctcgatgtttcccaagtcctccttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

94

Amino Acids

10.3

Weight (kDa)

4.28

Isoelectric Point (pI)

82.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	251
AciI	CCGC	3 cut(s)	129, 162, 165
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	149, 236
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	40, 58, 163, 169
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	29
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	3 cut(s)	116, 152, 196
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	129, 162, 165
BlsI	GCNGC	3 cut(s)	130, 163, 166
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	3 cut(s)	129, 162, 165
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	147
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	2 cut(s)	47, 134
Csp6I	GTAC	2 cut(s)	148, 235
CviJI	RGCY	4 cut(s)	8, 14, 89, 193
CviKI_1	RGCY	4 cut(s)	8, 14, 89, 193
CviQI	GTAC	2 cut(s)	148, 235
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	219
FalI	AAGNNNNNCTT	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	3 cut(s)	129, 162, 165
Fsp4HI	GCNGC	3 cut(s)	129, 162, 165
GluI	GCNGC	3 cut(s)	129, 162, 165
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	2 cut(s)	47, 134
Hin1I	GRCGYC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	2 cut(s)	20, 104
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	4 cut(s)	40, 58, 163, 169
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	41, 128
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	3 cut(s)	198, 203, 260
MaeIII	GTNAC	2 cut(s)	169, 175
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	85, 88
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	9 cut(s)	61, 85, 101, 110, 131, 205, 253, 267, 285
MseI	TTAA	1 cut(s)	283
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	169, 175
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 165, 209
PfeI	GAWTC	2 cut(s)	20, 104
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	130, 163, 166
PspPI	GGNCC	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	149, 236
RsaNI	GTAC	2 cut(s)	148, 235
SalI	GTCGAC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	283
SatI	GCNGC	3 cut(s)	129, 162, 165
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	187
ScaI	AGTACT	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	4 cut(s)	16, 53, 71, 123
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	3 cut(s)	129, 162, 165
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	4 cut(s)	102, 123, 251, 259
TasI	AATT	1 cut(s)	112
TatI	WGTACW	2 cut(s)	147, 234
TauI	GCSGC	3 cut(s)	131, 164, 167
TfiI	GAWTC	2 cut(s)	20, 104
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	169, 175
Tsp45I	GTSAC	2 cut(s)	169, 175
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.