Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00246

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Forward (+)

42703 .. 43867

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAAGACGAAGCTCAAGAATCGAGCCCCCAATACGATGCCGTCATCACCTCCTTTTGCGAGATCACCTCCGCCTCCCAACAAGAAGCCCTCTTCTTCCTCGAATCCCACTATTACGACCTCGACCCTGCCGTTTCCACTTTCTTGGACAACACCAACCCGTCGCCCATGCGCTCTCGCTCCCCGTCGCAGGCTCTGTCTTGCCCGGCCTACCAGCTCCGGTCCAAACGAGCCTCCTCCGGGACCAGCAAGGAGGACAACAAGCCGCGGGCTGAGTGTACACGTGGCGGCATTCGCACGCTTTCCGATCTGAATCGGTATCCGGTGAAGGATGGGTCTGACAGTGACTCCGATGAGCCCAACGAGTACTACACTGGTGGCGAGAAAAGTGGTATGCTTGTCCAAGACCCCACCCACGTGGATTCAATTTTCACTCAAGCCAGACAATTTGCACAAGGACCTCTGGAACCTTCATCAAGCTCAAAAAGTTTTACTGGAACAGCTAGAACACTTACAGGAGAGACCGTTCCAACTGCTGCACCTCAGCCACCCGAGTCCATCAATCACACCATTACTTTATGGAGGAATGGCTTTTCTATAGATGACGGTCCGCTGCGGAGGCTGGATGATCCTGCAAATGCAGCCTTCTTGGAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

218

Amino Acids

23.87

Weight (kDa)

4.63

Isoelectric Point (pI)

67.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_4	PF14555	13 - 52	3.1e-10	UBA-like domain
SEP	PF08059	191 - 218	6.9e-11	SEP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	268
AciI	CCGC	6 cut(s)	72, 266, 268, 288, 611, 616
AclWI	GGATC	1 cut(s)	623
AcvI	CACGTG	2 cut(s)	284, 418
AfaI	GTAC	2 cut(s)	280, 368
AfiI	CCNNNNNNNGG	2 cut(s)	190, 240
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	426
AleI	CACNNNNGTG	1 cut(s)	416
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	4 cut(s)	14, 217, 480, 503
AluI	AGCT	4 cut(s)	14, 217, 480, 503
Alw26I	GTCTC	1 cut(s)	515
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	536, 613, 641
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	4 cut(s)	222, 243, 458, 608
AsuC2I	CCSGG	2 cut(s)	206, 241
AsuHPI	GGTGA	3 cut(s)	40, 58, 337
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	4 cut(s)	222, 243, 458, 608
BanII	GRGCYC	2 cut(s)	29, 360
BbrPI	CACGTG	2 cut(s)	284, 418
BbsI	GAAGAC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	2 cut(s)	523, 600
BccI	CCATC	2 cut(s)	326, 566
BceAI	ACGGC	2 cut(s)	26, 116
BciVI	GTATCC	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	206, 241
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	330
BisI	GCNGC	5 cut(s)	266, 289, 537, 614, 642
BlsI	GCNGC	5 cut(s)	267, 290, 538, 615, 643
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	206, 241
Bme18I	GGWCC	4 cut(s)	222, 243, 458, 608
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	4 cut(s)	222, 243, 458, 608
BmiI	GGNNCC	2 cut(s)	244, 468
BmrFI	CCNGG	2 cut(s)	206, 241
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	2 cut(s)	206, 241
BsaAI	YACGTR	2 cut(s)	284, 418
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	2 cut(s)	219, 322
BsaXI	ACNNNNNCTCC	4 cut(s)	332, 362, 510, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 240
Bse1I	ACTGG	2 cut(s)	379, 499
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	337, 631
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	190, 240
BseMII	CTCAG	2 cut(s)	264, 557
BseNI	ACTGG	2 cut(s)	379, 499
BseRI	GAGGAG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	523, 600
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	4 cut(s)	206, 220, 240, 323
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	190, 240
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	29, 360
Bsp1407I	TGTACA	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	63, 307, 628
BspACI	CCGC	6 cut(s)	72, 266, 268, 288, 611, 616
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	265, 556
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	244, 468
BspPI	GGATC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	515
BsrGI	TGTACA	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	379, 499
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	3 cut(s)	63, 307, 628
Bst4CI	ACNGT	3 cut(s)	344, 526, 608
Bst6I	CTCTTC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	278
BstBAI	YACGTR	2 cut(s)	284, 418
BstC8I	GCNNGC	3 cut(s)	192, 270, 299
BstDEI	CTNAG	2 cut(s)	273, 543
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	337, 631
BstFNI	CGCG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	66, 310, 631
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	3 cut(s)	63, 307, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	294, 619, 641
BstSCI	CCNGG	2 cut(s)	204, 239
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	523, 600
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	2 cut(s)	145, 418
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	337, 631
BtsIMutI	CAGTG	2 cut(s)	349, 372
Cac8I	GCNNGC	3 cut(s)	192, 270, 299
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	4 cut(s)	222, 243, 458, 608
Cfr42I	CCGCGG	1 cut(s)	269
CpoI	CGGWCCG	1 cut(s)	608
Csp6I	GTAC	2 cut(s)	279, 367
CspI	CGGWCCG	1 cut(s)	608
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	2 cut(s)	279, 367
DdeI	CTNAG	2 cut(s)	273, 543
DpnI	GATC	3 cut(s)	65, 309, 630
DpnII	GATC	3 cut(s)	63, 307, 628
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	29, 360
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	4 cut(s)	222, 243, 458, 608
Eco72I	CACGTG	2 cut(s)	284, 418
Eco88I	CYCGRG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	458
EcoT38I	GRGCYC	2 cut(s)	29, 360
FaeI	CATG	1 cut(s)	172
FaiI	YATR	4 cut(s)	170, 395, 580, 599
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	5 cut(s)	266, 289, 537, 614, 642
FokI	GGATG	2 cut(s)	344, 638
FriOI	GRGCYC	2 cut(s)	29, 360
Fsp4HI	GCNGC	5 cut(s)	266, 289, 537, 614, 642
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	5 cut(s)	266, 289, 537, 614, 642
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	4 cut(s)	206, 220, 240, 323
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	6 cut(s)	20, 104, 313, 347, 422, 554
HpaII	CCGG	4 cut(s)	206, 220, 240, 323
HphI	GGTGA	3 cut(s)	40, 58, 337
Hpy166II	GTNNAC	2 cut(s)	279, 281
Hpy188I	TCNGA	4 cut(s)	307, 312, 340, 352
Hpy188III	TCNNGA	2 cut(s)	17, 464
Hpy8I	GTNNAC	2 cut(s)	279, 281
Hpy99I	CGWCG	2 cut(s)	166, 190
HpyAV	CCTTC	2 cut(s)	322, 480
HpyCH4III	ACNGT	3 cut(s)	344, 526, 608
HpyCH4IV	ACGT	2 cut(s)	283, 417
HpyCH4V	TGCA	4 cut(s)	452, 539, 635, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	294, 619, 641
HpyF3I	CTNAG	2 cut(s)	273, 543
HpySE526I	ACGT	2 cut(s)	283, 417
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	172
KspI	CCGCGG	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	63, 307, 628
LmnI	GCTCC	2 cut(s)	185, 222
Lsp1109I	GCAGC	2 cut(s)	523, 600
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	283, 417
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	3 cut(s)	65, 309, 630
MboI	GATC	3 cut(s)	63, 307, 628
MboII	GAAGA	3 cut(s)	17, 85, 88
MhlI	GDGCHC	2 cut(s)	29, 360
MluCI	AATT	2 cut(s)	426, 446
MlyI	GAGTC	2 cut(s)	341, 563
MmeI	TCCRAC	1 cut(s)	554
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	268, 613
MspI	CCGG	4 cut(s)	206, 220, 240, 323
MspR9I	CCNGG	2 cut(s)	206, 241
Mva1269I	GAATGC	1 cut(s)	291
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	294, 619, 641
NciI	CCSGG	2 cut(s)	206, 241
NdeII	GATC	3 cut(s)	63, 307, 628
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	244, 468
NmuCI	GTSAC	1 cut(s)	344
OliI	CACNNNNGTG	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	20, 104, 313, 422
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	267, 290, 538, 615, 643
PleI	GAGTC	2 cut(s)	341, 562
PmaCI	CACGTG	2 cut(s)	284, 418
PmlI	CACGTG	2 cut(s)	284, 418
PpsI	GAGTC	2 cut(s)	341, 562
Ppu21I	YACGTR	2 cut(s)	284, 418
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
PspCI	CACGTG	2 cut(s)	284, 418
PspN4I	GGNNCC	2 cut(s)	244, 468
PspPI	GGNCC	4 cut(s)	222, 243, 458, 608
PspPPI	RGGWCCY	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	280, 368
RsaNI	GTAC	2 cut(s)	279, 367
RseI	CAYNNNNRTG	1 cut(s)	416
Rsr2I	CGGWCCG	1 cut(s)	608
RsrII	CGGWCCG	1 cut(s)	608
SacII	CCGCGG	1 cut(s)	269
SatI	GCNGC	5 cut(s)	266, 289, 537, 614, 642
Sau3AI	GATC	3 cut(s)	63, 307, 628
Sau96I	GGNCC	4 cut(s)	222, 243, 458, 608
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	2 cut(s)	341, 563
ScrFI	CCNGG	2 cut(s)	206, 241
SduI	GDGCHC	2 cut(s)	29, 360
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	597
Sfr303I	CCGCGG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	269
SinI	GGWCC	4 cut(s)	222, 243, 458, 608
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	15, 435
SmoI	CTYRAG	2 cut(s)	15, 435
Sse9I	AATT	2 cut(s)	426, 446
SsiI	CCGC	6 cut(s)	72, 266, 268, 288, 611, 616
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	204, 239
TaaI	ACNGT	3 cut(s)	344, 526, 608
TaiI	ACGT	2 cut(s)	286, 420
TaqI	TCGA	3 cut(s)	23, 102, 123
TasI	AATT	2 cut(s)	426, 446
TatI	WGTACW	2 cut(s)	278, 366
TauI	GCSGC	2 cut(s)	268, 291
TfiI	GAWTC	4 cut(s)	20, 104, 313, 422
TscAI	CASTG	2 cut(s)	349, 379
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	3 cut(s)	536, 613, 641
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	349, 379
VpaK11BI	GGWCC	4 cut(s)	222, 243, 458, 608
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.