Rroxscaffold_2G00131060

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004014
Physical Location & Seq
Reverse (-)
67590263 .. 67590888
626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131060.1

Sequence Viewer

Length: 543 bp
ATGGCCGAAGCTCAAGAATCCGATCAAAAGAGTGAAGAAGAAGAAGAAGAGGAACACTATGGAAGCCGAAGCTCAAGAATCGAGCCCCCAAAACGACGCCGTCATCACCTCCTTCGCGAGATCACCTCCGCCTCCAAACAAGAAGCCCTCTTCTTCCTCGAATCCCACAATTACGACCTCGACGCCGCCGTTTCCACTTTCTTGGACAACGAAAACGCCGCCGCCGTCACCGTCACCAACCCGGTCCGGTCCTCCCACTCGCTCTCGCCGTCTCGTCACACTTGCCCGAACCAAACTCCTCCACTCAATTTGGCCTGCGAATTTCTCAATCAAGAAAACACACGAACCCGAAATGGCGACCCTTCCATCCACCCATTCTGCCGTACTTACTCCTCCTCATCATCGGCGTCGTATTCTTTCCGTACACGAAGCCTCCGAGAGGGTGGCCGTTTCTCCGAGTCCGCAATGTTTCGTCTCGCCAAGGTTTCTCTGCAGTCTCAATCCGTTTCGCAGCAAAATGTTGTCGGCATGCAAGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377
KEGG Pathways
Metabolic & Signaling
ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165
Pfam Domains
Protein Families
B56

Protein Analysis

180

Amino Acids

20.24

Weight (kDa)

5.98

Isoelectric Point (pI)

89.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 40 - 72 1.7e-09 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 5 cut(s) 129, 186, 219, 222, 462
AcoI YGGCCR 2 cut(s) 3, 445
AcsI RAATTY 1 cut(s) 320
AcyI GRCGYC 3 cut(s) 97, 183, 407
AfaI GTAC 2 cut(s) 385, 424
AfiI CCNNNNNNNGG 1 cut(s) 439
AluBI AGCT 2 cut(s) 11, 72
AluI AGCT 2 cut(s) 11, 72
Alw26I GTCTC 3 cut(s) 276, 479, 501
AoxI GGCC 3 cut(s) 3, 312, 445
ApeKI GCWGC 1 cut(s) 511
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 244, 249
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 4 cut(s) 98, 115, 220, 226
AvaII GGWCC 2 cut(s) 244, 249
BanII GRGCYC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 523
BccI CCATC 2 cut(s) 374, 530
BceAI ACGGC 6 cut(s) 84, 173, 209, 253, 366, 432
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 3 cut(s) 276, 479, 501
BfmI CTRYAG 1 cut(s) 491
BisI GCNGC 4 cut(s) 186, 219, 222, 512
BlsI GCNGC 4 cut(s) 187, 220, 223, 513
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 2 cut(s) 244, 249
BmgT120I GGNCC 2 cut(s) 244, 249
BmrFI CCNGG 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 3 cut(s) 97, 183, 407
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMI GCAATG 1 cut(s) 471
BseRI GAGGAG 3 cut(s) 288, 382, 385
BseXI GCAGC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 5, 314, 447
BsiSI CCGG 2 cut(s) 242, 247
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 3 cut(s) 276, 479, 501
BsmBI CGTCTC 2 cut(s) 276, 479
BsnI GGCC 3 cut(s) 5, 314, 447
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 22, 120
Bsp68I TCGCGA 1 cut(s) 117
BspACI CCGC 5 cut(s) 129, 186, 219, 222, 462
BspANI GGCC 3 cut(s) 5, 314, 447
BspFNI CGCG 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 471
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 2 cut(s) 22, 120
BssNI GRCGYC 3 cut(s) 97, 183, 407
BssT1I CCWWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 42, 155
BstACI GRCGYC 3 cut(s) 97, 183, 407
BstC8I GCNNGC 2 cut(s) 316, 530
BstENI CCTNNNNNAGG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 2 cut(s) 25, 123
BstMAI GTCTC 3 cut(s) 276, 479, 501
BstMBI GATC 2 cut(s) 22, 120
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 491
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 523
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 3 cut(s) 5, 314, 447
BtsCI GGATG 1 cut(s) 366
BtuMI TCGCGA 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 316, 530
Cfr13I GGNCC 2 cut(s) 244, 249
CpoI CGGWCCG 1 cut(s) 244
CseI GACGC 3 cut(s) 105, 191, 396
Csp6I GTAC 2 cut(s) 384, 423
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CspI CGGWCCG 1 cut(s) 244
CviAII CATG 1 cut(s) 529
CviJI RGCY 9 cut(s) 5, 11, 66, 72, 85, 146, 314, 432, 447
CviKI_1 RGCY 9 cut(s) 5, 11, 66, 72, 85, 146, 314, 432, 447
CviQI GTAC 2 cut(s) 384, 423
DpnI GATC 2 cut(s) 24, 122
DpnII GATC 2 cut(s) 22, 120
EaeI YGGCCR 2 cut(s) 3, 445
Eam1104I CTCTTC 2 cut(s) 42, 155
EarI CTCTTC 2 cut(s) 42, 155
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 244, 249
EcoNI CCTNNNNNAGG 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 2 cut(s) 276, 479
FaeI CATG 1 cut(s) 532
FaiI YATR 2 cut(s) 60, 530
FatI CATG 1 cut(s) 528
Fnu4HI GCNGC 4 cut(s) 186, 219, 222, 512
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 186, 219, 222, 512
GluI GCNGC 4 cut(s) 186, 219, 222, 512
HaeIII GGCC 3 cut(s) 5, 314, 447
HapII CCGG 2 cut(s) 242, 247
HgaI GACGC 3 cut(s) 105, 191, 396
Hin1I GRCGYC 3 cut(s) 97, 183, 407
Hin1II CATG 1 cut(s) 532
HinfI GANTC 4 cut(s) 17, 78, 161, 458
HpaII CCGG 2 cut(s) 242, 247
HphI GGTGA 4 cut(s) 98, 115, 220, 226
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 3 cut(s) 22, 437, 457
Hpy188III TCNNGA 4 cut(s) 14, 75, 116, 332
Hpy8I GTNNAC 1 cut(s) 425
Hpy99I CGWCG 3 cut(s) 99, 185, 412
HpyAV CCTTC 2 cut(s) 122, 372
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 493, 532
Hsp92I GRCGYC 3 cut(s) 97, 183, 407
Hsp92II CATG 1 cut(s) 532
Kzo9I GATC 2 cut(s) 22, 120
LpnPI CCDG 3 cut(s) 255, 260, 328
Lsp1109I GCAGC 1 cut(s) 523
MaeIII GTNAC 3 cut(s) 226, 232, 275
MalI GATC 2 cut(s) 24, 122
MboI GATC 2 cut(s) 22, 120
MboII GAAGA 7 cut(s) 47, 50, 53, 56, 59, 142, 145
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 3 cut(s) 169, 307, 320
MlyI GAGTC 1 cut(s) 467
MspI CCGG 2 cut(s) 242, 247
MspR9I CCNGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 117
NciI CCSGG 1 cut(s) 242
NdeII GATC 2 cut(s) 22, 120
NlaIII CATG 1 cut(s) 532
NmuCI GTSAC 3 cut(s) 226, 232, 275
NruI TCGCGA 1 cut(s) 117
NspI RCATGY 1 cut(s) 532
PaeI GCATGC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 4 cut(s) 186, 222, 266, 433
PfeI GAWTC 3 cut(s) 17, 78, 161
PflFI GACNNNGTC 1 cut(s) 99
PkrI GCNGC 4 cut(s) 187, 220, 223, 513
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PspPI GGNCC 2 cut(s) 244, 249
PstI CTGCAG 1 cut(s) 495
PsyI GACNNNGTC 1 cut(s) 99
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 2 cut(s) 385, 424
RsaNI GTAC 2 cut(s) 384, 423
Rsr2I CGGWCCG 1 cut(s) 244
RsrII CGGWCCG 1 cut(s) 244
SatI GCNGC 4 cut(s) 186, 219, 222, 512
Sau3AI GATC 2 cut(s) 22, 120
Sau96I GGNCC 2 cut(s) 244, 249
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 87
SetI ASST 6 cut(s) 13, 74, 111, 128, 180, 486
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 2 cut(s) 244, 249
SmlI CTYRAG 2 cut(s) 12, 73
SmoI CTYRAG 2 cut(s) 12, 73
SphI GCATGC 1 cut(s) 532
Sse9I AATT 3 cut(s) 169, 307, 320
SsiI CCGC 5 cut(s) 129, 186, 219, 222, 462
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 81, 159, 180
TasI AATT 3 cut(s) 169, 307, 320
TauI GCSGC 3 cut(s) 188, 221, 224
TfiI GAWTC 3 cut(s) 17, 78, 161
TseFI GTSAC 3 cut(s) 226, 232, 275
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 3 cut(s) 226, 232, 275
TspGWI ACGGA 2 cut(s) 410, 493
Tth111I GACNNNGTC 1 cut(s) 99
VpaK11BI GGWCC 2 cut(s) 244, 249
XagI CCTNNNNNAGG 1 cut(s) 437
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.