Rw6G019090

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
38064698 .. 38068455
3758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019090.1

Sequence Viewer

Length: 981 bp
ATGGAAGCCGAAGCTCAAGAATCGAGCCCCCAAAACGACGCCGTCAGCACCTCCTTCTGCGAGATCACCTCCGCCTCCAAACAAGAAGCCCTCTTCTTCCTCGAATCCCACAATTACAACCTCGACGCCGCCGTTTCCACTTTCTTGGACAACGAAAACGCCGCCACTGACGATGACGCCGCCGCTGTCACCGTCACCAACCCGGTCCAGCCCTCCCACTCGCTCTCGCCGTCTCCCTCACACTCGCCCGAGTACTCGCCCTCCCAGTCGCCCACGCACTCTCGGTCCCCGTCGCCGGCTCCGTCTCGCCTGGCCTACCAGCTCCGGTCCAAACGCGCCGCCTCCGGGACCAGCAAGGAGGACAACAAGCCGCCGGCTGCGCGTACACGTGGCGGCATTCGCACGCTTTCCGATCTGAATCGGCCTCCGGTGAAGGATGGGTCTGACAGTGACTCCGATGAGCCCAACGAGTACTACACTGGTGGCGAGAAAAGTGGTATGCTTGTCCAAGACCCCACCAGAGGCGGGGGTGACGTGGATTCAATTTTCACTCAAGCCAGATACTCAAAAAGTTTTACTGGAACAGCTAGAACACTTACAGGAGAGACCGTTCCAACTGCTGCACCTCAGCCACCTGAGTCCATCAATCACACCATTACTTTCTGGAGGAATGGCTTTTCCATAAATGACGGTCCGCTGCGGAGGCTGGATGATCCTGCAAATGCAGCCTTCTTGGAACTTGGTAATTACAGACATGCTCCTACTGATGCTGAGGAAGCAATTAGGCTCAGAAACACTAATGTCAAGGTAGCACTAATTCTTGAACATGTTCTTGTTCTTAGTCTTTGGGTGAGCAGAACTGGAGTCAATACTAGAGCTTCTACAAGGTCCTTGTCCATCATGTGTAGGATCGATGACGTAAAAGATCGAGAGGCTACTTATCATCTTTTCCTACAAGAGAGCTTCGGCAAGAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

326

Amino Acids

35.46

Weight (kDa)

5.43

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 18 - 53 3.9e-11 UBA-like domain
SEP PF08059 219 - 271 4e-12 SEP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 336, 382
AclWI GGATC 2 cut(s) 707, 917
AcvI CACGTG 1 cut(s) 389
AcyI GRCGYC 3 cut(s) 39, 126, 177
AfaI GTAC 3 cut(s) 254, 385, 473
AfiI CCNNNNNNNGG 4 cut(s) 295, 345, 521, 525
AflIII ACRYGT 2 cut(s) 386, 826
AgsI TTSAA 2 cut(s) 543, 824
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 1 cut(s) 309
AloI GAACNNNNNNTCC 2 cut(s) 594, 626
AluBI AGCT 5 cut(s) 14, 322, 587, 878, 963
AluI AGCT 5 cut(s) 14, 322, 587, 878, 963
Alw26I GTCTC 3 cut(s) 237, 309, 599
AlwI GGATC 2 cut(s) 707, 917
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 2 cut(s) 312, 422
ApeKI GCWGC 4 cut(s) 377, 620, 697, 725
Asp700I GAANNNNTTC 1 cut(s) 828
AspLEI GCGC 2 cut(s) 338, 382
AspS9I GGNCC 6 cut(s) 205, 285, 327, 348, 692, 888
AsuC2I CCSGG 2 cut(s) 203, 346
AsuHPI GGTGA 6 cut(s) 58, 181, 187, 442, 542, 862
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 6 cut(s) 205, 285, 327, 348, 692, 888
BanII GRGCYC 2 cut(s) 29, 465
BbrPI CACGTG 1 cut(s) 389
BbvCI CCTCAGC 2 cut(s) 627, 771
BbvI GCAGC 4 cut(s) 364, 607, 684, 737
BccI CCATC 3 cut(s) 431, 650, 905
BceAI ACGGC 3 cut(s) 26, 116, 214
BciT130I CCWGG 1 cut(s) 311
BcnI CCSGG 2 cut(s) 203, 346
BcoDI GTCTC 3 cut(s) 237, 309, 599
BfaI CTAG 2 cut(s) 588, 873
BmcAI AGTACT 2 cut(s) 254, 473
Bme1390I CCNGG 3 cut(s) 203, 311, 346
Bme18I GGWCC 6 cut(s) 205, 285, 327, 348, 692, 888
BmeT110I CYCGRG 1 cut(s) 248
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 6 cut(s) 205, 285, 327, 348, 692, 888
BmiI GGNNCC 3 cut(s) 287, 300, 349
BmrFI CCNGG 3 cut(s) 203, 311, 346
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 757
BmuI ACTGGG 1 cut(s) 259
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 2 cut(s) 685, 882
Bpu10I CCTNAGC 2 cut(s) 627, 771
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 2 cut(s) 203, 346
Bsa29I ATCGAT 1 cut(s) 912
BsaAI YACGTR 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 3 cut(s) 39, 126, 177
BsaI GGTCTC 1 cut(s) 599
BsaWI WCCGGW 2 cut(s) 324, 427
BsaXI ACNNNNNCTCC 6 cut(s) 245, 275, 437, 467, 594, 624
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 345, 521, 525
Bse118I RCCGGY 2 cut(s) 295, 373
Bse1I ACTGG 4 cut(s) 265, 484, 583, 865
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 311
BseCI ATCGAT 1 cut(s) 912
BseGI GGATG 2 cut(s) 442, 715
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 4 cut(s) 295, 345, 521, 525
BseMII CTCAG 4 cut(s) 627, 641, 762, 802
BseNI ACTGG 4 cut(s) 265, 484, 583, 865
BseXI GCAGC 4 cut(s) 364, 607, 684, 737
BsgI GTGCAG 1 cut(s) 606
Bsh1236I CGCG 2 cut(s) 336, 382
BshFI GGCC 2 cut(s) 314, 424
BshVI ATCGAT 1 cut(s) 912
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 6 cut(s) 203, 296, 325, 345, 374, 428
BslFI GGGAC 2 cut(s) 271, 361
BslI CCNNNNNNNGG 4 cut(s) 295, 345, 521, 525
BsmAI GTCTC 3 cut(s) 237, 309, 599
BsmBI CGTCTC 2 cut(s) 237, 309
BsmFI GGGAC 2 cut(s) 271, 361
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 2 cut(s) 314, 424
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 29, 465
Bsp143I GATC 5 cut(s) 63, 412, 712, 909, 925
BspANI GGCC 2 cut(s) 314, 424
BspCNI CTCAG 4 cut(s) 628, 640, 763, 801
BspDI ATCGAT 1 cut(s) 912
BspFNI CGCG 2 cut(s) 336, 382
BspLI GGNNCC 3 cut(s) 287, 300, 349
BspPI GGATC 2 cut(s) 707, 917
BspTNI GGTCTC 1 cut(s) 599
BsrFI RCCGGY 2 cut(s) 295, 373
BsrI ACTGG 4 cut(s) 265, 484, 583, 865
BssAI RCCGGY 2 cut(s) 295, 373
BssMI GATC 5 cut(s) 63, 412, 712, 909, 925
BssNI GRCGYC 3 cut(s) 39, 126, 177
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 4 cut(s) 193, 449, 610, 692
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 3 cut(s) 39, 126, 177
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 297, 375, 404
BstDEI CTNAG 5 cut(s) 627, 636, 771, 788, 839
BstF5I GGATG 2 cut(s) 442, 715
BstFNI CGCG 2 cut(s) 336, 382
BstHHI GCGC 2 cut(s) 338, 382
BstKTI GATC 5 cut(s) 66, 415, 715, 912, 928
BstMAI GTCTC 3 cut(s) 237, 309, 599
BstMBI GATC 5 cut(s) 63, 412, 712, 909, 925
BstMWI GCNNNNNNNGC 5 cut(s) 379, 399, 703, 725, 776
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 2 cut(s) 758, 830
BstSCI CCNGG 3 cut(s) 201, 309, 344
BstUI CGCG 2 cut(s) 336, 382
BstV1I GCAGC 4 cut(s) 364, 607, 684, 737
BstXI CCANNNNNNTGG 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 912
BsuRI GGCC 2 cut(s) 314, 424
BsuTUI ATCGAT 1 cut(s) 912
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 2 cut(s) 442, 715
BtsIMutI CAGTG 3 cut(s) 165, 454, 477
Cac8I GCNNGC 3 cut(s) 297, 375, 404
CfoI GCGC 2 cut(s) 338, 382
Cfr10I RCCGGY 2 cut(s) 295, 373
Cfr13I GGNCC 6 cut(s) 205, 285, 327, 348, 692, 888
ClaI ATCGAT 1 cut(s) 912
CpoI CGGWCCG 1 cut(s) 692
CseI GACGC 3 cut(s) 47, 134, 185
Csp6I GTAC 3 cut(s) 253, 384, 472
CspI CGGWCCG 1 cut(s) 692
CviAII CATG 3 cut(s) 755, 827, 901
CviQI GTAC 3 cut(s) 253, 384, 472
DdeI CTNAG 5 cut(s) 627, 636, 771, 788, 839
DpnI GATC 5 cut(s) 65, 414, 714, 911, 927
DpnII GATC 5 cut(s) 63, 412, 712, 909, 925
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 29, 465
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 6 cut(s) 205, 285, 327, 348, 692, 888
Eco72I CACGTG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 888
EcoRII CCWGG 1 cut(s) 309
EcoT38I GRGCYC 2 cut(s) 29, 465
Esp3I CGTCTC 2 cut(s) 237, 309
FaeI CATG 3 cut(s) 758, 830, 904
FaiI YATR 5 cut(s) 500, 683, 756, 828, 902
FaqI GGGAC 2 cut(s) 271, 361
FatI CATG 3 cut(s) 754, 826, 900
FauI CCCGC 1 cut(s) 518
FokI GGATG 2 cut(s) 449, 722
FriOI GRGCYC 2 cut(s) 29, 465
FspBI CTAG 2 cut(s) 588, 873
GlaI GCGC 2 cut(s) 337, 381
GsuI CTGGAG 2 cut(s) 685, 882
HaeIII GGCC 2 cut(s) 314, 424
HapII CCGG 6 cut(s) 203, 296, 325, 345, 374, 428
HgaI GACGC 3 cut(s) 47, 134, 185
HhaI GCGC 2 cut(s) 338, 382
Hin1I GRCGYC 3 cut(s) 39, 126, 177
Hin1II CATG 3 cut(s) 758, 830, 904
Hin6I GCGC 2 cut(s) 336, 380
HinP1I GCGC 2 cut(s) 336, 380
HinfI GANTC 7 cut(s) 20, 104, 418, 452, 539, 638, 864
HpaII CCGG 6 cut(s) 203, 296, 325, 345, 374, 428
HphI GGTGA 6 cut(s) 58, 181, 187, 442, 542, 862
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 5 cut(s) 412, 417, 445, 457, 791
Hpy188III TCNNGA 4 cut(s) 17, 664, 821, 929
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 3 cut(s) 41, 128, 295
HpyAV CCTTC 3 cut(s) 64, 427, 739
HpyCH4III ACNGT 4 cut(s) 193, 449, 610, 692
HpyCH4IV ACGT 3 cut(s) 388, 534, 918
HpyCH4V TGCA 3 cut(s) 623, 719, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 379, 399, 703, 725, 776
HpyF3I CTNAG 5 cut(s) 627, 636, 771, 788, 839
HpySE526I ACGT 3 cut(s) 388, 534, 918
Hsp92I GRCGYC 3 cut(s) 39, 126, 177
Hsp92II CATG 3 cut(s) 758, 830, 904
HspAI GCGC 2 cut(s) 336, 380
KroI GCCGGC 2 cut(s) 295, 373
KroNI GCCGGC 2 cut(s) 297, 375
Kzo9I GATC 5 cut(s) 63, 412, 712, 909, 925
LmnI GCTCC 3 cut(s) 304, 327, 763
Lsp1109I GCAGC 4 cut(s) 364, 607, 684, 737
LweI GCATC 1 cut(s) 757
MaeI CTAG 2 cut(s) 588, 873
MaeII ACGT 3 cut(s) 388, 534, 918
MaeIII GTNAC 4 cut(s) 187, 193, 449, 530
MalI GATC 5 cut(s) 65, 414, 714, 911, 927
MboI GATC 5 cut(s) 63, 412, 712, 909, 925
MboII GAAGA 2 cut(s) 85, 88
MhlI GDGCHC 2 cut(s) 29, 465
MluCI AATT 5 cut(s) 112, 543, 745, 780, 816
MlyI GAGTC 3 cut(s) 446, 647, 873
MmeI TCCRAC 1 cut(s) 638
MroNI GCCGGC 2 cut(s) 295, 373
MroXI GAANNNNTTC 1 cut(s) 828
MspA1I CMGCKG 2 cut(s) 185, 697
MspI CCGG 6 cut(s) 203, 296, 325, 345, 374, 428
MspR9I CCNGG 3 cut(s) 203, 311, 346
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 2 cut(s) 336, 382
MwoI GCNNNNNNNGC 5 cut(s) 379, 399, 703, 725, 776
NaeI GCCGGC 2 cut(s) 297, 375
NciI CCSGG 2 cut(s) 203, 346
NdeII GATC 5 cut(s) 63, 412, 712, 909, 925
NgoMIV GCCGGC 2 cut(s) 295, 373
NlaIII CATG 3 cut(s) 758, 830, 904
NlaIV GGNNCC 3 cut(s) 287, 300, 349
NmuCI GTSAC 4 cut(s) 187, 193, 449, 530
NspI RCATGY 2 cut(s) 758, 830
PciI ACATGT 1 cut(s) 826
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 227, 299
PctI GAATGC 1 cut(s) 396
PdiI GCCGGC 2 cut(s) 297, 375
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 4 cut(s) 20, 104, 418, 539
PflFI GACNNNGTC 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 344
PleI GAGTC 3 cut(s) 446, 646, 872
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
PpsI GAGTC 3 cut(s) 446, 646, 872
Ppu21I YACGTR 1 cut(s) 389
PpuMI RGGWCCY 1 cut(s) 888
PscI ACATGT 1 cut(s) 826
Psp5II RGGWCCY 1 cut(s) 888
Psp6I CCWGG 1 cut(s) 309
PspCI CACGTG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 287, 300, 349
PspPI GGNCC 6 cut(s) 205, 285, 327, 348, 692, 888
PspPPI RGGWCCY 1 cut(s) 888
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 3 cut(s) 254, 385, 473
RsaNI GTAC 3 cut(s) 253, 384, 472
Rsr2I CGGWCCG 1 cut(s) 692
RsrII CGGWCCG 1 cut(s) 692
Sau3AI GATC 5 cut(s) 63, 412, 712, 909, 925
Sau96I GGNCC 6 cut(s) 205, 285, 327, 348, 692, 888
ScaI AGTACT 2 cut(s) 254, 473
SchI GAGTC 3 cut(s) 446, 647, 873
ScrFI CCNGG 3 cut(s) 203, 311, 346
SduI GDGCHC 2 cut(s) 29, 465
SfaNI GCATC 1 cut(s) 757
SinI GGWCC 6 cut(s) 205, 285, 327, 348, 692, 888
SmlI CTYRAG 2 cut(s) 15, 552
SmoI CTYRAG 2 cut(s) 15, 552
Sse9I AATT 5 cut(s) 112, 543, 745, 780, 816
SspMI CTAG 2 cut(s) 588, 873
StyD4I CCNGG 3 cut(s) 201, 309, 344
TaaI ACNGT 4 cut(s) 193, 449, 610, 692
TaiI ACGT 3 cut(s) 391, 537, 921
TaqI TCGA 5 cut(s) 23, 102, 123, 912, 928
TaqII GACCGA 1 cut(s) 273
TasI AATT 5 cut(s) 112, 543, 745, 780, 816
TatI WGTACW 2 cut(s) 252, 471
TauI GCSGC 7 cut(s) 131, 164, 182, 185, 341, 373, 396
TfiI GAWTC 4 cut(s) 20, 104, 418, 539
TscAI CASTG 3 cut(s) 172, 454, 484
TseFI GTSAC 4 cut(s) 187, 193, 449, 530
TseI GCWGC 4 cut(s) 377, 620, 697, 725
Tsp45I GTSAC 4 cut(s) 187, 193, 449, 530
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 3 cut(s) 172, 454, 484
Tth111I GACNNNGTC 1 cut(s) 41
VpaK11BI GGWCC 6 cut(s) 205, 285, 327, 348, 692, 888
XceI RCATGY 2 cut(s) 758, 830
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 2 cut(s) 588, 873
ZrmI AGTACT 2 cut(s) 254, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.