Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Forward (+)

47235014 .. 47236092

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG349700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAGCCGAAGCTCAAGAATCGAGCCCCCAAAACGACGCCGTCATCACCTCCTTCTGCGAGATCACCTCCACCTCCAAACAAGAAGCCCTCTTCTTCCTCGAATCCCACAATTACGACCTCGACGCCGCCGTTTCCACTTTCTTGGACAACGAAAACGCCGCCGCCGTCACCAACCCGGTCCAGCCCTCCCACTCGCTCTCGCCGTCTCTGCCACACTCGCCCGAGTACTGGCCCTCCCAGTCGCCCACGCGCTCTCGCTCCCCGTCGCCGGCTCCGTCTCGCCCGGCCTACCAGCTCCGGTCCAAACGCGCCGCCTCCGGGACCAGCAAGGAGGACAACAAGCCGCCGGCTGCGCGTACACGTGGCGGTATTCGCACGCTTTCCGATCTGAATCGGCGTCCGGTGAAGGATGGGTCTGACAGTGACTCCGATGAGCCCAACGAGTACTACACTGGTGGCGAGAAAAGGTTCGTGCACTTCAGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

163

Amino Acids

17.8

Weight (kDa)

5.36

Isoelectric Point (pI)

84.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_4	PF14555	13 - 53	3.1e-12	UBA-like domain
UBA_8	PF22566	15 - 54	7.4e-06	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	253, 312, 358
AciI	CCGC	7 cut(s)	129, 162, 165, 315, 347, 369, 486
AcuI	CTGAAG	1 cut(s)	466
AcvI	CACGTG	1 cut(s)	365
AcyI	GRCGYC	3 cut(s)	39, 126, 400
AfaI	GTAC	3 cut(s)	230, 361, 449
AfiI	CCNNNNNNNGG	3 cut(s)	231, 271, 321
AflIII	ACRYGT	1 cut(s)	362
AluBI	AGCT	2 cut(s)	14, 298
AluI	AGCT	2 cut(s)	14, 298
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	2 cut(s)	213, 285
Alw44I	GTGCAC	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	233, 288
ApaLI	GTGCAC	1 cut(s)	476
ApeKI	GCWGC	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	470
AspLEI	GCGC	3 cut(s)	255, 314, 358
AspS9I	GGNCC	4 cut(s)	181, 234, 303, 324
AsuC2I	CCSGG	3 cut(s)	179, 287, 322
AsuHPI	GGTGA	4 cut(s)	40, 58, 163, 418
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	3 cut(s)	181, 303, 324
BaeGI	GKGCMC	1 cut(s)	480
BanII	GRGCYC	2 cut(s)	29, 441
BbrPI	CACGTG	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	4 cut(s)	26, 116, 152, 190
BcnI	CCSGG	3 cut(s)	179, 287, 322
BcoDI	GTCTC	2 cut(s)	213, 285
BisI	GCNGC	6 cut(s)	129, 162, 165, 315, 347, 354
BlsI	GCNGC	6 cut(s)	130, 163, 166, 316, 348, 355
BmcAI	AGTACT	2 cut(s)	230, 449
Bme1390I	CCNGG	3 cut(s)	179, 287, 322
Bme18I	GGWCC	3 cut(s)	181, 303, 324
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	181, 234, 303, 324
BmiI	GGNNCC	2 cut(s)	276, 325
BmrFI	CCNGG	3 cut(s)	179, 287, 322
BmrI	ACTGGG	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpuMI	CCSGG	3 cut(s)	179, 287, 322
BsaAI	YACGTR	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	3 cut(s)	39, 126, 400
BsaWI	WCCGGW	2 cut(s)	300, 403
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 413, 443
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 271, 321
Bse118I	RCCGGY	2 cut(s)	271, 349
Bse1I	ACTGG	3 cut(s)	236, 241, 460
Bse8I	GATNNNNATC	1 cut(s)	393
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	231, 271, 321
BseNI	ACTGG	3 cut(s)	236, 241, 460
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	3 cut(s)	253, 312, 358
BshFI	GGCC	2 cut(s)	235, 290
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	7 cut(s)	179, 272, 287, 301, 321, 350, 404
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	3 cut(s)	231, 271, 321
BsmAI	GTCTC	2 cut(s)	213, 285
BsmBI	CGTCTC	2 cut(s)	213, 285
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	235, 290
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	29, 441, 480
Bsp143I	GATC	2 cut(s)	63, 388
BspACI	CCGC	7 cut(s)	129, 162, 165, 315, 347, 369, 486
BspANI	GGCC	2 cut(s)	235, 290
BspFNI	CGCG	3 cut(s)	253, 312, 358
BspLI	GGNNCC	2 cut(s)	276, 325
BsrFI	RCCGGY	2 cut(s)	271, 349
BsrI	ACTGG	3 cut(s)	236, 241, 460
BssAI	RCCGGY	2 cut(s)	271, 349
BssMI	GATC	2 cut(s)	63, 388
BssNI	GRCGYC	3 cut(s)	39, 126, 400
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	3 cut(s)	39, 126, 400
BstBAI	YACGTR	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	273, 351, 380
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	3 cut(s)	253, 312, 358
BstHHI	GCGC	3 cut(s)	255, 314, 358
BstKTI	GATC	2 cut(s)	66, 391
BstMAI	GTCTC	2 cut(s)	213, 285
BstMBI	GATC	2 cut(s)	63, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 220, 355, 375
BstSCI	CCNGG	3 cut(s)	177, 285, 320
BstSLI	GKGCMC	1 cut(s)	480
BstUI	CGCG	3 cut(s)	253, 312, 358
BstV1I	GCAGC	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	235, 290
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	430, 453
Cac8I	GCNNGC	3 cut(s)	273, 351, 380
CfoI	GCGC	3 cut(s)	255, 314, 358
Cfr10I	RCCGGY	2 cut(s)	271, 349
Cfr13I	GGNCC	4 cut(s)	181, 234, 303, 324
CseI	GACGC	3 cut(s)	47, 134, 389
Csp6I	GTAC	3 cut(s)	229, 360, 448
CviQI	GTAC	3 cut(s)	229, 360, 448
DpnI	GATC	2 cut(s)	65, 390
DpnII	GATC	2 cut(s)	63, 388
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco24I	GRGCYC	2 cut(s)	29, 441
Eco47I	GGWCC	3 cut(s)	181, 303, 324
Eco57I	CTGAAG	1 cut(s)	466
Eco72I	CACGTG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	224
EcoT38I	GRGCYC	2 cut(s)	29, 441
Esp3I	CGTCTC	2 cut(s)	213, 285
FaqI	GGGAC	1 cut(s)	337
Fnu4HI	GCNGC	6 cut(s)	129, 162, 165, 315, 347, 354
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	2 cut(s)	29, 441
Fsp4HI	GCNGC	6 cut(s)	129, 162, 165, 315, 347, 354
GlaI	GCGC	3 cut(s)	254, 313, 357
GluI	GCNGC	6 cut(s)	129, 162, 165, 315, 347, 354
HaeIII	GGCC	2 cut(s)	235, 290
HapII	CCGG	7 cut(s)	179, 272, 287, 301, 321, 350, 404
HgaI	GACGC	3 cut(s)	47, 134, 389
HhaI	GCGC	3 cut(s)	255, 314, 358
Hin1I	GRCGYC	3 cut(s)	39, 126, 400
Hin6I	GCGC	3 cut(s)	253, 312, 356
HinP1I	GCGC	3 cut(s)	253, 312, 356
HinfI	GANTC	4 cut(s)	20, 104, 394, 428
HpaII	CCGG	7 cut(s)	179, 272, 287, 301, 321, 350, 404
HphI	GGTGA	4 cut(s)	40, 58, 163, 418
Hpy166II	GTNNAC	2 cut(s)	362, 478
Hpy188I	TCNGA	4 cut(s)	388, 393, 421, 433
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	2 cut(s)	362, 478
Hpy99I	CGWCG	3 cut(s)	41, 128, 271
HpyAV	CCTTC	2 cut(s)	64, 403
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 220, 355, 375
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	3 cut(s)	39, 126, 400
HspAI	GCGC	3 cut(s)	253, 312, 356
KroI	GCCGGC	2 cut(s)	271, 349
KroNI	GCCGGC	2 cut(s)	273, 351
Kzo9I	GATC	2 cut(s)	63, 388
LmnI	GCTCC	3 cut(s)	266, 280, 303
Lsp1109I	GCAGC	1 cut(s)	340
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	169, 425
MalI	GATC	2 cut(s)	65, 390
MboI	GATC	2 cut(s)	63, 388
MboII	GAAGA	2 cut(s)	85, 88
MhlI	GDGCHC	3 cut(s)	29, 441, 480
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	422
MroNI	GCCGGC	2 cut(s)	271, 349
MroXI	GAANNNNTTC	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	7 cut(s)	179, 272, 287, 301, 321, 350, 404
MspR9I	CCNGG	3 cut(s)	179, 287, 322
MvnI	CGCG	3 cut(s)	253, 312, 358
MwoI	GCNNNNNNNGC	4 cut(s)	211, 220, 355, 375
NaeI	GCCGGC	2 cut(s)	273, 351
NciI	CCSGG	3 cut(s)	179, 287, 322
NdeII	GATC	2 cut(s)	63, 388
NgoMIV	GCCGGC	2 cut(s)	271, 349
NlaIV	GGNNCC	2 cut(s)	276, 325
NmuCI	GTSAC	2 cut(s)	169, 425
PcsI	WCGNNNNNNNCGW	4 cut(s)	129, 165, 203, 275
PdiI	GCCGGC	2 cut(s)	273, 351
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	3 cut(s)	20, 104, 394
PflFI	GACNNNGTC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	320
PkrI	GCNGC	6 cut(s)	130, 163, 166, 316, 348, 355
PleI	GAGTC	1 cut(s)	422
PmaCI	CACGTG	1 cut(s)	365
PmlI	CACGTG	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	365
PspCI	CACGTG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	276, 325
PspPI	GGNCC	4 cut(s)	181, 234, 303, 324
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	3 cut(s)	230, 361, 449
RsaNI	GTAC	3 cut(s)	229, 360, 448
SatI	GCNGC	6 cut(s)	129, 162, 165, 315, 347, 354
Sau3AI	GATC	2 cut(s)	63, 388
Sau96I	GGNCC	4 cut(s)	181, 234, 303, 324
ScaI	AGTACT	2 cut(s)	230, 449
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	3 cut(s)	179, 287, 322
SduI	GDGCHC	3 cut(s)	29, 441, 480
SetI	ASST	8 cut(s)	16, 53, 71, 77, 123, 300, 367, 473
SinI	GGWCC	3 cut(s)	181, 303, 324
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	7 cut(s)	129, 162, 165, 315, 347, 369, 486
StyD4I	CCNGG	3 cut(s)	177, 285, 320
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	3 cut(s)	23, 102, 123
TasI	AATT	1 cut(s)	112
TatI	WGTACW	2 cut(s)	228, 447
TauI	GCSGC	5 cut(s)	131, 164, 167, 317, 349
TfiI	GAWTC	3 cut(s)	20, 104, 394
TscAI	CASTG	2 cut(s)	430, 460
TseFI	GTSAC	2 cut(s)	169, 425
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	169, 425
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	430, 460
Tth111I	GACNNNGTC	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	476
VpaK11BI	GGWCC	3 cut(s)	181, 303, 324
XmnI	GAANNNNTTC	1 cut(s)	470
ZrmI	AGTACT	2 cut(s)	230, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.