Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Reverse (-)

18561196 .. 18561621

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCGAAGCTCAAGAATCCGATCAAAAGAGTGAAGAAGAAGAAGAAGAGGTACACTATAGAAGCCGAAGCTTAAGAATCGAGCCCCAAAACGACGCCGTCATCACCTCCTTCGCGAGATCACCTCCGCCTCCAAACAAGAAGCCCTCTTCTTCCTCGAATTCCACAATTACGACCTCGACGCCGCCGTTTCCACTTTCTTGGACAACAAAAACGCCGCCGCCGACGACGACGCCGCCGCAGCCACCGTCACCAACCCGGTCCAGCCCGCCCACTCGCTCTCGCCGTCTCCGTCACACTCGCCCTCCCACTCGCCCACGCGCTCTCGCAAACCAAGCTAAACTCAACCACGACGACATCGCCAATGCTATTAAGAGTCTCACCGGTCACGTATACGTTGACTCTCGTGTACTTCAACTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

141

Amino Acids

15.66

Weight (kDa)

9.97

Isoelectric Point (pI)

101.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	2 cut(s)	116, 321
AciI	CCGC	7 cut(s)	128, 185, 218, 221, 236, 239, 269
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	160
AcyI	GRCGYC	3 cut(s)	96, 182, 233
AfaI	GTAC	2 cut(s)	54, 411
AflII	CTTAAG	1 cut(s)	73
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	416
AluBI	AGCT	3 cut(s)	11, 72, 338
AluI	AGCT	3 cut(s)	11, 72, 338
Alw26I	GTCTC	2 cut(s)	293, 383
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	160
AsiGI	ACCGGT	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	4 cut(s)	97, 114, 243, 373
AvaII	GGWCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	3 cut(s)	36, 68, 402
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	253
BceAI	ACGGC	3 cut(s)	83, 172, 270
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	293, 383
BfmI	CTRYAG	1 cut(s)	58
BfrI	CTTAAG	1 cut(s)	73
BisI	GCNGC	6 cut(s)	185, 218, 221, 236, 239, 242
BlsI	GCNGC	6 cut(s)	186, 219, 222, 237, 240, 243
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	259
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpuMI	CCSGG	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	391
BsaHI	GRCGYC	3 cut(s)	96, 182, 233
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bse118I	RCCGGY	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	116, 321
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	259, 384
BsmAI	GTCTC	2 cut(s)	293, 383
BsmBI	CGTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	22, 119
Bsp68I	TCGCGA	1 cut(s)	116
BspACI	CCGC	7 cut(s)	128, 185, 218, 221, 236, 239, 269
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	116, 321
BspTI	CTTAAG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssMI	GATC	2 cut(s)	22, 119
BssNAI	GTATAC	1 cut(s)	394
BssNI	GRCGYC	3 cut(s)	96, 182, 233
BssSI	CACGAG	1 cut(s)	405
Bst1107I	GTATAC	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	2 cut(s)	42, 154
BstACI	GRCGYC	3 cut(s)	96, 182, 233
BstAFI	CTTAAG	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	269
BstFNI	CGCG	2 cut(s)	116, 321
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	25, 122
BstMAI	GTCTC	2 cut(s)	293, 383
BstMBI	GATC	2 cut(s)	22, 119
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 335
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	2 cut(s)	116, 321
BstV1I	GCAGC	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	201
BstZ17I	GTATAC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	343
BtuMI	TCGCGA	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	3 cut(s)	104, 190, 241
Csp6I	GTAC	2 cut(s)	53, 410
CspAI	ACCGGT	1 cut(s)	383
CviJI	RGCY	9 cut(s)	5, 11, 66, 72, 85, 145, 244, 267, 338
CviKI_1	RGCY	9 cut(s)	5, 11, 66, 72, 85, 145, 244, 267, 338
CviQI	GTAC	2 cut(s)	53, 410
DpnI	GATC	2 cut(s)	24, 121
DpnII	GATC	2 cut(s)	22, 119
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	42, 154
EarI	CTCTTC	2 cut(s)	42, 154
EciI	GGCGGA	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	293
FaiI	YATR	2 cut(s)	60, 394
FauI	CCCGC	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	6 cut(s)	185, 218, 221, 236, 239, 242
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	6 cut(s)	185, 218, 221, 236, 239, 242
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	6 cut(s)	185, 218, 221, 236, 239, 242
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	259, 384
HgaI	GACGC	3 cut(s)	104, 190, 241
HhaI	GCGC	1 cut(s)	323
Hin1I	GRCGYC	3 cut(s)	96, 182, 233
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	4 cut(s)	17, 78, 376, 401
HpaII	CCGG	2 cut(s)	259, 384
HphI	GGTGA	4 cut(s)	97, 114, 243, 373
Hpy166II	GTNNAC	4 cut(s)	55, 394, 400, 410
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	14, 115
Hpy8I	GTNNAC	4 cut(s)	55, 394, 400, 410
Hpy99I	CGWCG	6 cut(s)	98, 184, 229, 232, 235, 356
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4IV	ACGT	2 cut(s)	390, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 335
HpySE526I	ACGT	2 cut(s)	390, 396
Hsp92I	GRCGYC	3 cut(s)	96, 182, 233
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	22, 119
LpnPI	CCDG	3 cut(s)	272, 277, 397
Lsp1109I	GCAGC	1 cut(s)	253
MaeII	ACGT	2 cut(s)	390, 396
MaeIII	GTNAC	3 cut(s)	249, 293, 386
MalI	GATC	2 cut(s)	24, 121
MboI	GATC	2 cut(s)	22, 119
MboII	GAAGA	7 cut(s)	47, 50, 53, 56, 59, 141, 144
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	160, 168
MlyI	GAGTC	2 cut(s)	385, 395
MnlI	CCTC	8 cut(s)	43, 118, 135, 141, 157, 166, 187, 315
MseI	TTAA	2 cut(s)	74, 372
MspCI	CTTAAG	1 cut(s)	73
MspI	CCGG	2 cut(s)	259, 384
MspR9I	CCNGG	1 cut(s)	259
MvnI	CGCG	2 cut(s)	116, 321
MwoI	GCNNNNNNNGC	2 cut(s)	241, 335
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	22, 119
NmuCI	GTSAC	3 cut(s)	249, 293, 386
NruI	TCGCGA	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	4 cut(s)	185, 221, 283, 289
PfeI	GAWTC	2 cut(s)	17, 78
PflFI	GACNNNGTC	1 cut(s)	98
PinAI	ACCGGT	1 cut(s)	383
PkrI	GCNGC	6 cut(s)	186, 219, 222, 237, 240, 243
PleI	GAGTC	2 cut(s)	384, 395
PpsI	GAGTC	2 cut(s)	384, 395
Ppu21I	YACGTR	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	98
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	2 cut(s)	54, 411
RsaNI	GTAC	2 cut(s)	53, 410
SaqAI	TTAA	2 cut(s)	74, 372
SatI	GCNGC	6 cut(s)	185, 218, 221, 236, 239, 242
Sau3AI	GATC	2 cut(s)	22, 119
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	2 cut(s)	385, 395
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	13, 54, 74, 110, 127, 179, 340, 393, 399
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	12, 73
SmoI	CTYRAG	2 cut(s)	12, 73
Sse9I	AATT	2 cut(s)	160, 168
SsiI	CCGC	7 cut(s)	128, 185, 218, 221, 236, 239, 269
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	249
TaiI	ACGT	2 cut(s)	393, 399
TaqI	TCGA	3 cut(s)	81, 158, 179
TasI	AATT	2 cut(s)	160, 168
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	5 cut(s)	187, 220, 223, 238, 241
TfiI	GAWTC	2 cut(s)	17, 78
Tru1I	TTAA	2 cut(s)	74, 372
Tru9I	TTAA	2 cut(s)	74, 372
TseFI	GTSAC	3 cut(s)	249, 293, 386
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	3 cut(s)	249, 293, 386
TspGWI	ACGGA	1 cut(s)	281
Tth111I	GACNNNGTC	1 cut(s)	98
Vha464I	CTTAAG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.