Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Forward (+)

78714957 .. 78716483

Gene Structure 1527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG557600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTTGTCCAAGACCCTACCAGAGGCGGGGGTGACGTGGATTCAATTTTCACTCAAGCCAGACAGTTTGCACAAGGACCTCTGGAACCTTCGTCAAGCTCAAAAAGTTTTACTGGAACAGCTAGAACACTTACAGGAGAGACCGTTCCAACTGCTGCACCTCAGCCACCTGAGTCCATCAATCACACCATTACTTTCTGGAGGAATGGCTTTTCCATAGATGACGGTCCGCTGCGGAGGCTGGATGATCCTGCAAATGCAGCCTTCTTGGAAAGCATCAAGAAGTCTGAGTGCCCAAAAGAGCTTGAACCAGCTAGTAGGAGGACTACTGTTCATGTCAGTCTTATGAAGCGGGAGGAAGACTACCCTGAACCATTGAAGCAGCAGGGTCAGGTTGCTTTTCAGGGTGTTGGAAGAACATTAGGTGGCAGCAGCTCGGAGTCAGCTGCCTCTGAGTCAACTGCTGCTGCCAGTCCTCCTCTTACAACTGCTCCATTGCCATCAATGGGCTTAACTGTTGATCAGTCATTGCCGTCGACCTCTATTCAGCTAAGGTTGGCAGATGGTACCCGGATGGTGTCTCGCTTCAACAACCACCATACAATCAGAGAAATCCATGCTTTTATCGATGCATCAAGACCTGGTGGGGTAAGAAATTACCGATTGCAGACAATGGGTTTTCCTCCAAAACAGCTCACTGATCTGGACCAGACAATTGAGCAGGCCGGTGTCGCCAATTCTGTTATCATCCAAAAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

253

Amino Acids

27.3

Weight (kDa)

6.22

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	64 - 139	4.5e-27	SEP domain
UBX	PF00789	178 - 252	5.2e-17	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	536
AciI	CCGC	4 cut(s)	27, 230, 235, 352
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	3 cut(s)	23, 27, 506
AgsI	TTSAA	4 cut(s)	45, 308, 379, 589
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	640
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	8 cut(s)	99, 122, 304, 314, 435, 446, 550, 694
AluI	AGCT	8 cut(s)	99, 122, 304, 314, 435, 446, 550, 694
Alw26I	GTCTC	2 cut(s)	134, 585
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	723
ApeKI	GCWGC	9 cut(s)	155, 232, 260, 382, 429, 432, 446, 464, 467
Asp718I	GGTACC	1 cut(s)	566
AspS9I	GGNCC	3 cut(s)	77, 227, 706
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	3 cut(s)	77, 227, 706
BaeGI	GKGCMC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	9 cut(s)	142, 219, 272, 394, 433, 441, 444, 451, 454
BccI	CCATC	4 cut(s)	185, 508, 557, 568
BceAI	ACGGC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	642
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	134, 585
BfaI	CTAG	3 cut(s)	123, 315, 760
BisI	GCNGC	9 cut(s)	156, 233, 261, 383, 430, 433, 447, 465, 468
BlsI	GCNGC	9 cut(s)	157, 234, 262, 384, 431, 434, 448, 466, 469
Bme1390I	CCNGG	2 cut(s)	571, 642
Bme18I	GGWCC	3 cut(s)	77, 227, 706
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	77, 227, 706
BmiI	GGNNCC	2 cut(s)	87, 568
BmrFI	CCNGG	2 cut(s)	571, 642
BmsI	GCATC	3 cut(s)	285, 619, 641
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	2 cut(s)	162, 551
BpuEI	CTTGAG	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	571
Bsa29I	ATCGAT	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	134
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 475, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 27, 506
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	2 cut(s)	118, 471
Bse3DI	GCAATG	2 cut(s)	494, 527
BseBI	CCWGG	1 cut(s)	642
BseCI	ATCGAT	1 cut(s)	627
BseGI	GGATG	3 cut(s)	250, 579, 747
BseLI	CCNNNNNNNGG	3 cut(s)	23, 27, 506
BseMI	GCAATG	2 cut(s)	494, 527
BseMII	CTCAG	4 cut(s)	162, 176, 279, 444
BseNI	ACTGG	2 cut(s)	118, 471
BseRI	GAGGAG	1 cut(s)	468
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	9 cut(s)	142, 219, 272, 394, 433, 441, 444, 451, 454
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	725
BshNI	GGYRCC	1 cut(s)	566
BshVI	ATCGAT	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	571, 726
BslI	CCNNNNNNNGG	3 cut(s)	23, 27, 506
BsmAI	GTCTC	2 cut(s)	134, 585
BsnI	GGCC	1 cut(s)	725
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	247, 520, 700
BspACI	CCGC	4 cut(s)	27, 230, 235, 352
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	4 cut(s)	163, 175, 280, 445
BspDI	ATCGAT	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	87, 568
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	494, 527
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	2 cut(s)	118, 471
BssAI	RCCGGY	1 cut(s)	725
BssMI	GATC	3 cut(s)	247, 520, 700
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	5 cut(s)	66, 145, 227, 331, 517
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	5 cut(s)	162, 171, 288, 453, 551
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	250, 579, 747
BstKTI	GATC	3 cut(s)	250, 523, 703
BstMAI	GTCTC	2 cut(s)	134, 585
BstMBI	GATC	3 cut(s)	247, 520, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 260, 731
BstNI	CCWGG	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	569, 640
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	9 cut(s)	142, 219, 272, 394, 433, 441, 444, 451, 454
BstV2I	GAAGAC	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	725
BsuTUI	ATCGAT	1 cut(s)	627
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	3 cut(s)	250, 579, 747
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	723
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	3 cut(s)	77, 227, 706
ClaI	ATCGAT	1 cut(s)	627
CpoI	CGGWCCG	1 cut(s)	227
CsiI	ACCWGGT	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	567
CspI	CGGWCCG	1 cut(s)	227
CviAII	CATG	2 cut(s)	335, 617
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	5 cut(s)	162, 171, 288, 453, 551
DpnI	GATC	3 cut(s)	249, 522, 702
DpnII	GATC	3 cut(s)	247, 520, 700
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	3 cut(s)	77, 227, 706
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	640
EcoT22I	ATGCAT	1 cut(s)	634
FaeI	CATG	2 cut(s)	338, 620
FaiI	YATR	5 cut(s)	218, 336, 347, 600, 618
FatI	CATG	2 cut(s)	334, 616
FauI	CCCGC	2 cut(s)	20, 345
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	9 cut(s)	156, 233, 261, 383, 430, 433, 447, 465, 468
FokI	GGATG	3 cut(s)	257, 586, 734
Fsp4HI	GCNGC	9 cut(s)	156, 233, 261, 383, 430, 433, 447, 465, 468
FspBI	CTAG	3 cut(s)	123, 315, 760
GluI	GCNGC	9 cut(s)	156, 233, 261, 383, 430, 433, 447, 465, 468
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	2 cut(s)	571, 726
Hin1II	CATG	2 cut(s)	338, 620
HincII	GTYRAC	2 cut(s)	459, 537
HindII	GTYRAC	2 cut(s)	459, 537
HinfI	GANTC	4 cut(s)	41, 173, 440, 455
HpaII	CCGG	2 cut(s)	571, 726
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	459, 537
Hpy188I	TCNGA	4 cut(s)	289, 439, 454, 608
Hpy188III	TCNNGA	5 cut(s)	83, 199, 280, 636, 704
Hpy8I	GTNNAC	2 cut(s)	459, 537
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	2 cut(s)	99, 274
HpyCH4III	ACNGT	5 cut(s)	66, 145, 227, 331, 517
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	6 cut(s)	71, 158, 254, 260, 632, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 260, 731
HpyF3I	CTNAG	5 cut(s)	162, 171, 288, 453, 551
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	338, 620
KpnI	GGTACC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	247, 520, 700
LmnI	GCTCC	1 cut(s)	496
Lsp1109I	GCAGC	9 cut(s)	142, 219, 272, 394, 433, 441, 444, 451, 454
LweI	GCATC	3 cut(s)	285, 619, 641
MabI	ACCWGGT	1 cut(s)	640
MaeI	CTAG	3 cut(s)	123, 315, 760
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	3 cut(s)	249, 522, 702
MboI	GATC	3 cut(s)	247, 520, 700
MboII	GAAGA	2 cut(s)	371, 426
MfeI	CAATTG	1 cut(s)	714
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	4 cut(s)	45, 655, 714, 736
MlyI	GAGTC	3 cut(s)	182, 449, 464
MmeI	TCCRAC	2 cut(s)	173, 391
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	1 cut(s)	512
MspA1I	CMGCKG	2 cut(s)	232, 446
MspI	CCGG	2 cut(s)	571, 726
MspR9I	CCNGG	2 cut(s)	571, 642
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	238, 260, 731
NciI	CCSGG	1 cut(s)	571
NdeII	GATC	3 cut(s)	247, 520, 700
NlaIII	CATG	2 cut(s)	338, 620
NlaIV	GGNNCC	2 cut(s)	87, 568
NmuCI	GTSAC	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	9 cut(s)	157, 234, 262, 384, 431, 434, 448, 466, 469
PleI	GAGTC	3 cut(s)	181, 448, 463
PpsI	GAGTC	3 cut(s)	181, 448, 463
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	87, 568
PspPI	GGNCC	3 cut(s)	77, 227, 706
PspPPI	RGGWCCY	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
Rsr2I	CGGWCCG	1 cut(s)	227
RsrII	CGGWCCG	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	9 cut(s)	156, 233, 261, 383, 430, 433, 447, 465, 468
Sau3AI	GATC	3 cut(s)	247, 520, 700
Sau96I	GGNCC	3 cut(s)	77, 227, 706
SchI	GAGTC	3 cut(s)	182, 449, 464
ScrFI	CCNGG	2 cut(s)	571, 642
SduI	GDGCHC	1 cut(s)	296
SexAI	ACCWGGT	1 cut(s)	640
SfaNI	GCATC	3 cut(s)	285, 619, 641
SinI	GGWCC	3 cut(s)	77, 227, 706
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	4 cut(s)	45, 655, 714, 736
SsiI	CCGC	4 cut(s)	27, 230, 235, 352
SspMI	CTAG	3 cut(s)	123, 315, 760
StyD4I	CCNGG	2 cut(s)	569, 640
TaaI	ACNGT	5 cut(s)	66, 145, 227, 331, 517
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	536, 627
TasI	AATT	4 cut(s)	45, 655, 714, 736
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	9 cut(s)	155, 232, 260, 382, 429, 432, 446, 464, 467
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	323, 362
TspRI	CASTG	1 cut(s)	703
VpaK11BI	GGWCC	3 cut(s)	77, 227, 706
XagI	CCTNNNNNAGG	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	3 cut(s)	123, 315, 760
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.