Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Reverse (-)

12577302 .. 12577949

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG066900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACGCCGTCATCACCTCCTTCGGCGAGATCACCTCCTCCTCCAAACAAGAAGCCCTCTTCTTCCTCGAATCCCACAATTACGACCTCGACGCCGCCGTTTCCACTTTCTTGGACAACTAAAACGCCGCTGCCGCCGTCACCGTCACCGTCACCAACCCGGTCCAGCCCTCCCACTCTCTCTCGTCGTCTCCATCACACTCGCCCGAGTACTCGCCCTCCCAGTCGCCCACGTGCTCTCACTCCCCGTCGCCGGCTCCGACTCGCCCGGCCTACCAGCAAGGAGGACAACAAGCCGCCGGCTACGTGTACACGTGGCGGCATTCACAAGCTTTCCGATCTGAATCGGCGTCCGGTGAAGGATGGGTCTGACAGTGACTCTGATGAGCCCAACGAGTATTACACTGGTGGAGAGAAAAGGTTACTGAGAAAAGTGAAGGGTTTGCAGGACAAACCATCTAAACTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

156

Amino Acids

17.15

Weight (kDa)

11.25

Isoelectric Point (pI)

103.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	95, 128, 134, 296, 318
AcvI	CACGTG	2 cut(s)	233, 314
AcyI	GRCGYC	3 cut(s)	5, 92, 349
AfaI	GTAC	2 cut(s)	211, 310
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflIII	ACRYGT	2 cut(s)	305, 311
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	2 cut(s)	160, 268
AsuHPI	GGTGA	6 cut(s)	6, 24, 132, 138, 144, 367
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	390
BbrPI	CACGTG	2 cut(s)	233, 314
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	3 cut(s)	201, 356, 463
BceAI	ACGGC	2 cut(s)	82, 121
BcnI	CCSGG	2 cut(s)	160, 268
BcoDI	GTCTC	1 cut(s)	194
BisI	GCNGC	6 cut(s)	95, 128, 131, 134, 296, 319
BlsI	GCNGC	6 cut(s)	96, 129, 132, 135, 297, 320
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	160, 268
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	2 cut(s)	160, 268
BmrI	ACTGGG	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuMI	CCSGG	2 cut(s)	160, 268
BsaAI	YACGTR	3 cut(s)	233, 306, 314
BsaBI	GATNNNNATC	1 cut(s)	342
BsaHI	GRCGYC	3 cut(s)	5, 92, 349
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	2 cut(s)	252, 298
Bse1I	ACTGG	2 cut(s)	222, 409
Bse8I	GATNNNNATC	1 cut(s)	342
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	222, 409
BseRI	GAGGAG	2 cut(s)	27, 30
BseXI	GCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	205
BsiSI	CCGG	5 cut(s)	160, 253, 268, 299, 353
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	238, 390
Bsp1407I	TGTACA	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	29, 337
BspACI	CCGC	5 cut(s)	95, 128, 134, 296, 318
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	257
BsrFI	RCCGGY	2 cut(s)	252, 298
BsrGI	TGTACA	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	222, 409
BssAI	RCCGGY	2 cut(s)	252, 298
BssMI	GATC	2 cut(s)	29, 337
BssNI	GRCGYC	3 cut(s)	5, 92, 349
Bst4CI	ACNGT	3 cut(s)	144, 150, 374
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	3 cut(s)	5, 92, 349
BstAUI	TGTACA	1 cut(s)	308
BstBAI	YACGTR	3 cut(s)	233, 306, 314
BstC8I	GCNNGC	2 cut(s)	254, 300
BstDEI	CTNAG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	2 cut(s)	32, 340
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	29, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	158, 266
BstV1I	GCAGC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	379, 402
Cac8I	GCNNGC	2 cut(s)	254, 300
Cfr10I	RCCGGY	2 cut(s)	252, 298
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	3 cut(s)	13, 100, 338
Csp6I	GTAC	2 cut(s)	210, 309
CviJI	RGCY	8 cut(s)	55, 168, 256, 271, 295, 302, 331, 388
CviKI_1	RGCY	8 cut(s)	55, 168, 256, 271, 295, 302, 331, 388
CviQI	GTAC	2 cut(s)	210, 309
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	2 cut(s)	31, 339
DpnII	GATC	2 cut(s)	29, 337
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	162
Eco72I	CACGTG	2 cut(s)	233, 314
Eco88I	CYCGRG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	194
Fnu4HI	GCNGC	6 cut(s)	95, 128, 131, 134, 296, 319
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	6 cut(s)	95, 128, 131, 134, 296, 319
GluI	GCNGC	6 cut(s)	95, 128, 131, 134, 296, 319
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	5 cut(s)	160, 253, 268, 299, 353
HgaI	GACGC	3 cut(s)	13, 100, 338
Hin1I	GRCGYC	3 cut(s)	5, 92, 349
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	70, 261, 343, 377
HpaII	CCGG	5 cut(s)	160, 253, 268, 299, 353
HphI	GGTGA	6 cut(s)	6, 24, 132, 138, 144, 367
Hpy166II	GTNNAC	2 cut(s)	309, 311
Hpy188I	TCNGA	5 cut(s)	260, 337, 342, 370, 382
Hpy8I	GTNNAC	2 cut(s)	309, 311
Hpy99I	CGWCG	3 cut(s)	94, 189, 252
HpyAV	CCTTC	3 cut(s)	30, 352, 430
HpyCH4III	ACNGT	3 cut(s)	144, 150, 374
HpyCH4IV	ACGT	3 cut(s)	232, 305, 313
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	3 cut(s)	232, 305, 313
Hsp92I	GRCGYC	3 cut(s)	5, 92, 349
KroI	GCCGGC	2 cut(s)	252, 298
KroNI	GCCGGC	2 cut(s)	254, 300
Kzo9I	GATC	2 cut(s)	29, 337
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	1 cut(s)	117
MaeII	ACGT	3 cut(s)	232, 305, 313
MaeIII	GTNAC	5 cut(s)	138, 144, 150, 374, 420
MalI	GATC	2 cut(s)	31, 339
MboI	GATC	2 cut(s)	29, 337
MboII	GAAGA	2 cut(s)	51, 54
MhlI	GDGCHC	2 cut(s)	238, 390
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	255, 371
MmeI	TCCRAC	1 cut(s)	283
MroNI	GCCGGC	2 cut(s)	252, 298
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	5 cut(s)	160, 253, 268, 299, 353
MspR9I	CCNGG	2 cut(s)	160, 268
Mva1269I	GAATGC	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	133
NaeI	GCCGGC	2 cut(s)	254, 300
NciI	CCSGG	2 cut(s)	160, 268
NdeII	GATC	2 cut(s)	29, 337
NgoMIV	GCCGGC	2 cut(s)	252, 298
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	4 cut(s)	138, 144, 150, 374
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 256
PctI	GAATGC	1 cut(s)	321
PdiI	GCCGGC	2 cut(s)	254, 300
PfeI	GAWTC	2 cut(s)	70, 343
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	6 cut(s)	96, 129, 132, 135, 297, 320
PleI	GAGTC	2 cut(s)	255, 371
PmaCI	CACGTG	2 cut(s)	233, 314
PmlI	CACGTG	2 cut(s)	233, 314
PpsI	GAGTC	2 cut(s)	255, 371
Ppu21I	YACGTR	3 cut(s)	233, 306, 314
PspCI	CACGTG	2 cut(s)	233, 314
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	211, 310
RsaNI	GTAC	2 cut(s)	210, 309
SatI	GCNGC	6 cut(s)	95, 128, 131, 134, 296, 319
Sau3AI	GATC	2 cut(s)	29, 337
Sau96I	GGNCC	1 cut(s)	162
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	2 cut(s)	255, 371
ScrFI	CCNGG	2 cut(s)	160, 268
SduI	GDGCHC	2 cut(s)	238, 390
SetI	ASST	8 cut(s)	19, 37, 89, 235, 308, 316, 333, 422
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	5 cut(s)	95, 128, 134, 296, 318
StyD4I	CCNGG	2 cut(s)	158, 266
TaaI	ACNGT	3 cut(s)	144, 150, 374
TaiI	ACGT	3 cut(s)	235, 308, 316
TaqI	TCGA	3 cut(s)	68, 89, 465
TasI	AATT	1 cut(s)	78
TatI	WGTACW	2 cut(s)	209, 308
TauI	GCSGC	5 cut(s)	97, 130, 136, 298, 321
TfiI	GAWTC	2 cut(s)	70, 343
TscAI	CASTG	2 cut(s)	379, 409
TseFI	GTSAC	4 cut(s)	138, 144, 150, 374
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	4 cut(s)	138, 144, 150, 374
TspRI	CASTG	2 cut(s)	379, 409
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.