Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008144.1

Orthogroup ID

OG0004014

Physical Location & Seq

Genomic Coordinates Reverse (-)

53983 .. 54267

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008144.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atggaagccgaagctcaagaatcgagcctccaaaacgacgccgtcatcacctccttctgcgagatcacctccgcctccaaacaagaagccctcttcttcctcgaatcccataattacgacctcgacgccgccgtttccactttcttggacaacgaaaacgccgccgcagtcaccgtcaccaacccggtccagccctcccactcgctctcgccgtctccgtcacacttgctcgagtactcgccctcccagtcgacccctcgatgtttcccaagtcctccttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

94

Amino Acids

10.19

Weight (kDa)

4.19

Isoelectric Point (pI)

73.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05040 AT1G05040
fragaria_vesca	FvH4_6g42560
malus_domestica	MD09G1112600.v1.1 MD17G1102700.v1.1
prunus_persica	Prupe.3G212000_v2.0.a1
pyrus_communis	pycom09g03700 pycom17g09710
rosa_chinensis	RchiOBHm_Chr2g0158411
rosa_multiflora	Rmu_sc0000469.1_g000016 Rmu_sc0000469.1_g000017 Rmu_sc0004269.1_g000002 Rmu_sc0004855.1_g000011 Rmu_sc0008144.1_g000009 Rmu_sc0018496.1_g000001 Rmu_ssc0000482.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091410 Rroxscaffold_2G00131060 Rroxscaffold_3G00232820 Rroxscaffold_5G00387420
rosa_rugosa	Rorug02G0468400
rosa_samantha	Rh2AG534600 Rh2BG548000 Rh2CG316000 Rh2CG349700 Rh2CG518400 Rh2DG557600 Rh4BG060900 Rh4CG066900
rosa_wichuraiana	Rw0G006730 Rw1G014520 Rw2G044270 Rw6G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	251
AciI	CCGC	4 cut(s)	72, 129, 162, 165
AcyI	GRCGYC	2 cut(s)	39, 126
AfaI	GTAC	1 cut(s)	236
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	40, 58, 163, 169
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	187
BceAI	ACGGC	3 cut(s)	26, 116, 196
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	129, 162, 165
BlsI	GCNGC	3 cut(s)	130, 163, 166
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpuMI	CCSGG	1 cut(s)	185
BsaHI	GRCGYC	2 cut(s)	39, 126
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	4 cut(s)	72, 129, 162, 165
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	2 cut(s)	39, 126
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	2 cut(s)	39, 126
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	2 cut(s)	47, 134
Csp6I	GTAC	1 cut(s)	235
CviJI	RGCY	5 cut(s)	8, 14, 27, 89, 193
CviKI_1	RGCY	5 cut(s)	8, 14, 27, 89, 193
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	219
FaiI	YATR	1 cut(s)	111
FalI	AAGNNNNNCTT	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	3 cut(s)	129, 162, 165
Fsp4HI	GCNGC	3 cut(s)	129, 162, 165
GluI	GCNGC	3 cut(s)	129, 162, 165
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	2 cut(s)	47, 134
Hin1I	GRCGYC	2 cut(s)	39, 126
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	2 cut(s)	20, 104
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	4 cut(s)	40, 58, 163, 169
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	41, 128
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	175
Hsp92I	GRCGYC	2 cut(s)	39, 126
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	3 cut(s)	198, 203, 260
MaeIII	GTNAC	3 cut(s)	169, 175, 219
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	85, 88
MluCI	AATT	1 cut(s)	112
MseI	TTAA	1 cut(s)	283
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	63
NmuCI	GTSAC	3 cut(s)	169, 175, 219
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 209, 215
PfeI	GAWTC	2 cut(s)	20, 104
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	130, 163, 166
PspPI	GGNCC	1 cut(s)	187
PspXI	VCTCGAGB	1 cut(s)	230
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	283
SatI	GCNGC	3 cut(s)	129, 162, 165
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	187
ScaI	AGTACT	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	4 cut(s)	16, 53, 71, 123
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	15, 230
SmoI	CTYRAG	2 cut(s)	15, 230
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	4 cut(s)	72, 129, 162, 165
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	6 cut(s)	23, 102, 123, 231, 251, 259
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	3 cut(s)	131, 164, 167
TfiI	GAWTC	2 cut(s)	20, 104
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TseFI	GTSAC	3 cut(s)	169, 175, 219
Tsp45I	GTSAC	3 cut(s)	169, 175, 219
TspGWI	ACGGA	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	187
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.