Rmu_sc0000594.1_g000077

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000594.1
OG0011566
Physical Location & Seq
Reverse (-)
298455 .. 300096
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
atgcgaaccgggcagggattgtttttatcttctggaggccggttcggtacttttctggccggttccggtgacgccgccggcggttttgggctcctgggattgagagcttcaaggtgggggtcggtggttgctgggttatgctccataactttggttaccggcctcctcctcttactccgcagcgcaactaaaataacacacaaggcccaagcagtggcatgcctagctaccaagtggcatgtttgtgccacactggagtcgtttgatggaaccgagttggattctccaacggctcaaattgcgaatgatccagcattttattttaacaccgacgaagaatcagacggggatttggttagtgatgaagataatgacttggaaaacaccaagatggtgccatcttgttcatctcataccatttcttaccaaaaacgtcaagctctgggtaagcccacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

152

Amino Acids

16.0

Weight (kDa)

5.24

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 46 - 148 7.4e-30 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 214
AciI CCGC 3 cut(s) 75, 81, 178
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 111
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 3 cut(s) 107, 227, 440
AluI AGCT 3 cut(s) 107, 227, 440
AlwI GGATC 1 cut(s) 302
AoxI GGCC 4 cut(s) 37, 57, 160, 204
ApeKI GCWGC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 80
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 192
BccI CCATC 3 cut(s) 260, 385, 406
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 1 cut(s) 224
BisI GCNGC 2 cut(s) 75, 181
BlsI GCNGC 2 cut(s) 76, 182
Bme1390I CCNGG 2 cut(s) 10, 95
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 64, 92, 271, 396
BmrFI CCNGG 2 cut(s) 10, 95
BpmI CTGGAG 2 cut(s) 54, 275
BpuMI CCSGG 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 4 cut(s) 39, 59, 77, 158
Bse1I ACTGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 258
BseRI GAGGAG 2 cut(s) 155, 158
BseXI GCAGC 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 4 cut(s) 39, 59, 162, 206
BshNI GGYRCC 1 cut(s) 394
BsiSI CCGG 6 cut(s) 9, 40, 60, 66, 78, 159
BslI CCNNNNNNNGG 1 cut(s) 214
BsnI GGCC 4 cut(s) 39, 59, 162, 206
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 3 cut(s) 75, 81, 178
BspANI GGCC 4 cut(s) 39, 59, 162, 206
BspLI GGNNCC 4 cut(s) 64, 92, 271, 396
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 394
BsrFI RCCGGY 4 cut(s) 39, 59, 77, 158
BsrI ACTGG 1 cut(s) 258
BssAI RCCGGY 4 cut(s) 39, 59, 77, 158
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 79, 220
BstEII GGTNACC 1 cut(s) 154
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 10, 224, 299
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 2 cut(s) 222, 242
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 8, 93
BstV1I GCAGC 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 151
BsuRI GGCC 4 cut(s) 39, 59, 162, 206
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 251
Cac8I GCNNGC 2 cut(s) 79, 220
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 4 cut(s) 39, 59, 77, 158
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 219, 239
CviQI GTAC 1 cut(s) 48
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 2 cut(s) 222, 242
FaiI YATR 5 cut(s) 139, 146, 220, 240, 414
FatI CATG 2 cut(s) 218, 238
Fnu4HI GCNGC 2 cut(s) 75, 181
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 2 cut(s) 75, 181
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 75, 181
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 54, 275
HaeIII GGCC 4 cut(s) 39, 59, 162, 206
HapII CCGG 6 cut(s) 9, 40, 60, 66, 78, 159
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 2 cut(s) 222, 242
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 3 cut(s) 257, 281, 338
HpaII CCGG 6 cut(s) 9, 40, 60, 66, 78, 159
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 224, 299
HpySE526I ACGT 1 cut(s) 433
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 2 cut(s) 222, 242
HspAI GCGC 1 cut(s) 183
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 96, 146
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 2 cut(s) 68, 154
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 21, 347, 377
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 258, 311
MnlI CCTC 4 cut(s) 29, 173, 176, 179
MreI CGCCGGCG 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 243, 389
MspI CCGG 6 cut(s) 9, 40, 60, 66, 78, 159
MspR9I CCNGG 2 cut(s) 10, 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 10, 224, 299
NaeI GCCGGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 10
NdeII GATC 1 cut(s) 307
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 2 cut(s) 222, 242
NlaIV GGNNCC 4 cut(s) 64, 92, 271, 396
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 2 cut(s) 222, 242
PaeI GCATGC 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 79
PfeI GAWTC 2 cut(s) 281, 338
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 2 cut(s) 76, 182
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 93
PspEI GGTNACC 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 4 cut(s) 64, 92, 271, 396
PspPI GGNCC 1 cut(s) 205
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 2 cut(s) 243, 389
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 75, 181
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 2 cut(s) 10, 95
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 109, 116, 229, 436, 442, 458
SgrAI CRCCGGYG 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 243, 389
SphI GCATGC 1 cut(s) 222
Sse9I AATT 1 cut(s) 297
SsiI CCGC 3 cut(s) 75, 81, 178
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 8, 93
TaiI ACGT 1 cut(s) 436
TasI AATT 1 cut(s) 297
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 281, 338
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 219, 258
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 378, 396
TspRI CASTG 2 cut(s) 219, 258
Van91I CCANNNNNTGG 1 cut(s) 214
XceI RCATGY 2 cut(s) 222, 242
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.