Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000680.1

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Forward (+)

115785 .. 123216

Gene Structure 7432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

atggaccagcccgtcgactcagaggaatccgaaaatggttgccacgcaagcagtcacgaaattggtgatccccatgttgtgggtccccccactctagctgttttccaatcacactatatcggtggtgcaccctactcccttcacaactcagcttcagcttcggctcggctcggcttcctccacccgctcattgactctcctcggctacggagtccaaatggcaccgcttggtccagacaaaacccctcttctgctcggctcggcttatcaaagccggctcaatccttcaacgtcaaatctcacacattttccgagacgactccaaacgacgccgtcgcgatcttctccactaccagctctgctgacagaccggccggcgtggcttctccggcaatgtggaactcacgcgctccggtcgccgtacttgctgctcttctctactcagtagctctggtctctgctcagggatctagtcaatggaaaacactcacaggagatccgcctttggtcatagcacgagggggcttttcaggactctttcctggtttcagttctatagcgtacaatttggcattgatcactagtgtaccagatgtggtattatattgtgatgtccaactaacaaaggatgcagctggaatctgctttccagatttgctgctgaataacaattcgaatgttgaacaaatgtttccaaatcaggataaaacttacccggttgatggagttccgaaaaaagggtggtttagcattgactatactctcaaagaccttgcaaatgttattgttactcagggagtatatactcgatctaacaagtttgatggcaacatgtacccaattctcaccatagaagatgtgcgtatgcaattcagaccactaggcttatggttgaatattgagaacaatatattcttcacgcaacacaacttgagtatgagaaactatgtgatttctgtatcaaagaaagtggttgtcaattttatctcatcaccagaggtggatttcctgaaaaatattgaagcacgtgttagtccaagcacaacaaagttgatctttaagtttcttgataaagctgtgattgagccttcgacaaaccagacttatggttctctgttgaagaatctcacatttatcaagacatttgcctctggaattatagttcctaaaacttacatatggcctgtcactccagacaattatttagaacctcacactacaattgtttcggatgctcataaagcagggctcacagtatttgtgtcaggtttgtataatgacgtgccattccccttcaattacagttatgatccagtttctgagtacctgtcattctttgacaatggcgatttcagtgttgacggtgtgctgtctgactttcccataactccatcagcagccatagattgttatgctcacccagaaaagaatgcttcagtacaagatacacctttggttatctcaaaagacggagatagcggagactaccctggctgtactgacttggcatatacgcatgcaattgcagatggtgtagatgtactcgattgtaacgtccaaatgtccaaggacgggattccattttgctcgagctctataaatcttattgatagcacaacagttgctcaatcaagctttagcagctacacaatggttgttccagaaattaaggttggcagtggaatatatacctttagcctgacatgggatcagatcaaaacactacaaccaactttatcaagcccagagaaaaattacaacttgctcaggaatccaagattcaagagtgctggcacttacttgaaactatctgaatttttgaccttggcaaagaattcgagttctctattaggtgtcttaattggcatagagcatgcggcatatcttgtagagaagcagggactacgtgtaacagatgcagtcatgactgagttgaagaacgctggttttggtaatcagacagccctagatgtcatgattcagtccagcaatagttctgttctgatgaaatttaaggagaaaagcaagtataaacttgtttacaagattgaagaggacattggtgatgcccctgataaaactgttcaggacatcaagaaatttgccgatgctgtggtcatcaacaaggcctctgtcttgccagaaaatcagttattcgtcgatggagcaaccaatgttgtaaagaagtttcatggatttaaactacctgtttatgttgaactcttcagcaatgagtttgtatctcaagcatgggacttcttctcagatgcatccgtggagatcaattcatttgtgatgggggccgaagttgatggtgttatcacaggcttccccaaaacagctgctagatacaaaagaaaccggtgtttaagttataaagtgacacctacctacatgagccctgttctgccaggcagtctgatacaagttgtctctcctgcttacttgccacctgctgaggccccaaatccagccctgacagagagtgatgtggttgagccgcctttgccgtccgccgaaacggccttagctcctgggccagctggtggatctacagtaccaccaccacggccgaatgggcagcctaagactgctgcgtgcttctttctctcaactctggctatgctagttgccactctttttcttatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

883

Amino Acids

95.87

Weight (kDa)

5.43

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	491 - 779	1e-22	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2376
AarI	CACCTGC	1 cut(s)	2461
AasI	GACNNNNNNGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	2461
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	2 cut(s)	79, 2546
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	2 cut(s)	338, 408
AciI	CCGC	7 cut(s)	185, 225, 500, 1479, 1877, 2501, 2514
AclWI	GGATC	6 cut(s)	62, 475, 491, 1304, 1716, 2557
AcoI	YGGCCR	2 cut(s)	372, 2570
AcsI	RAATTY	4 cut(s)	1814, 1834, 2009, 2099
AcuI	CTGAAG	3 cut(s)	138, 1419, 2209
AcvI	CACGTG	1 cut(s)	1028
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	9 cut(s)	423, 563, 588, 836, 1325, 1440, 1498, 1542, 2559
AfiI	CCNNNNNNNGG	6 cut(s)	79, 722, 737, 1572, 1705, 2546
AflIII	ACRYGT	3 cut(s)	831, 1027, 1906
AgeI	ACCGGT	1 cut(s)	2361
AhlI	ACTAGT	1 cut(s)	581
AjiI	CACGTC	1 cut(s)	1282
AjnI	CCWGG	4 cut(s)	541, 1489, 2410, 2533
AjuI	GAANNNNNNNTTGG	4 cut(s)	1656, 1688, 2043, 2075
AloI	GAACNNNNNNTCC	2 cut(s)	1146, 1178
Alw21I	GWGCWC	2 cut(s)	130, 1595
Alw26I	GTCTC	4 cut(s)	308, 460, 1476, 2437
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	6 cut(s)	62, 475, 491, 1304, 1716, 2557
AlwNI	CAGNNNCTG	1 cut(s)	1319
Ama87I	CYCGRG	1 cut(s)	1588
AoxI	GGCC	8 cut(s)	372, 1181, 2127, 2301, 2460, 2523, 2537, 2570
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	8 cut(s)	428, 632, 658, 1397, 1641, 2342, 2581, 2594
ApoI	RAATTY	4 cut(s)	1814, 1834, 2009, 2099
AsiGI	ACCGGT	1 cut(s)	2361
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	6 cut(s)	4, 83, 231, 2301, 2461, 2537
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	5 cut(s)	77, 838, 984, 1409, 2075
AsuII	TTCGAA	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	1588
AvaII	GGWCC	3 cut(s)	4, 83, 231
BaeGI	GKGCMC	1 cut(s)	130
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	3 cut(s)	1251, 1595, 2402
BauI	CACGAG	1 cut(s)	516
BbrPI	CACGTG	1 cut(s)	1028
Bbv12I	GWGCWC	2 cut(s)	130, 1595
BbvCI	CCTCAGC	1 cut(s)	2457
BbvI	GCAGC	8 cut(s)	415, 644, 645, 1409, 1653, 2329, 2581, 2593
BccI	CCATC	7 cut(s)	716, 818, 1399, 1523, 2156, 2290, 2306
BceAI	ACGGC	5 cut(s)	317, 404, 2494, 2538, 2585
BcgI	CGANNNNNNTGC	2 cut(s)	1818, 1852
BciT130I	CCWGG	4 cut(s)	543, 1491, 2412, 2535
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	4 cut(s)	308, 460, 1476, 2437
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	7 cut(s)	95, 471, 582, 881, 1967, 2346, 2627
BfmI	CTRYAG	2 cut(s)	555, 2553
BfuAI	ACCTGC	1 cut(s)	2461
BglI	GCCNNNNNGGC	3 cut(s)	380, 2522, 2578
Bme1390I	CCNGG	5 cut(s)	543, 716, 1491, 2412, 2535
Bme18I	GGWCC	3 cut(s)	4, 83, 231
BmeT110I	CYCGRG	1 cut(s)	1588
BmgBI	CACGTC	1 cut(s)	1282
BmgT120I	GGNCC	6 cut(s)	4, 83, 231, 2301, 2461, 2537
BmiI	GGNNCC	5 cut(s)	84, 85, 223, 2302, 2463
BmrFI	CCNGG	5 cut(s)	543, 716, 1491, 2412, 2535
BmsI	GCATC	7 cut(s)	619, 1222, 1906, 2056, 2098, 2257, 2279
BpmI	CTGGAG	1 cut(s)	1176
Bpu10I	CCTNAGC	4 cut(s)	462, 1766, 2457, 2527
Bpu14I	TTCGAA	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	952, 2229
BpuMI	CCSGG	1 cut(s)	716
BsaAI	YACGTR	2 cut(s)	1028, 1907
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	7 cut(s)	200, 1489, 1566, 1824, 2274, 2534, 2567
BsaWI	WCCGGW	2 cut(s)	412, 2361
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 722, 737, 1572, 1705, 2546
Bse118I	RCCGGY	4 cut(s)	274, 370, 374, 2361
Bse1I	ACTGG	1 cut(s)	1313
Bse3DI	GCAATG	2 cut(s)	399, 2236
BseBI	CCWGG	4 cut(s)	543, 1491, 2412, 2535
BseDI	CCNNGG	7 cut(s)	200, 1489, 1566, 1824, 2274, 2534, 2567
BseGI	GGATG	3 cut(s)	634, 1237, 2270
BseLI	CCNNNNNNNGG	6 cut(s)	79, 722, 737, 1572, 1705, 2546
BseMI	GCAATG	2 cut(s)	399, 2236
BseNI	ACTGG	1 cut(s)	1313
BseRI	GAGGAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	130
BseX3I	CGGCCG	2 cut(s)	372, 2570
BseXI	GCAGC	8 cut(s)	415, 644, 645, 1409, 1653, 2329, 2581, 2593
Bsh1236I	CGCG	2 cut(s)	338, 408
Bsh1285I	CGRYCG	3 cut(s)	375, 417, 2573
BshFI	GGCC	8 cut(s)	374, 1183, 2129, 2303, 2462, 2525, 2539, 2572
BshNI	GGYRCC	1 cut(s)	221
BshTI	ACCGGT	1 cut(s)	2361
BsiEI	CGRYCG	3 cut(s)	375, 417, 2573
BsiHKAI	GWGCWC	2 cut(s)	130, 1595
BsiHKCI	CYCGRG	1 cut(s)	1588
BsiSI	CCGG	7 cut(s)	275, 371, 375, 389, 413, 716, 2362
BslFI	GGGAC	3 cut(s)	69, 1914, 2267
BslI	CCNNNNNNNGG	6 cut(s)	79, 722, 737, 1572, 1705, 2546
BsmAI	GTCTC	4 cut(s)	308, 460, 1476, 2437
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	3 cut(s)	69, 1914, 2267
BsmI	GAATGC	1 cut(s)	1435
BsnI	GGCC	8 cut(s)	374, 1183, 2129, 2303, 2462, 2525, 2539, 2572
Bso31I	GGTCTC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	1588
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	4 cut(s)	130, 1251, 1595, 2402
Bsp68I	TCGCGA	1 cut(s)	338
BspACI	CCGC	7 cut(s)	185, 225, 500, 1479, 1877, 2501, 2514
BspANI	GGCC	8 cut(s)	374, 1183, 2129, 2303, 2462, 2525, 2539, 2572
BspFNI	CGCG	2 cut(s)	338, 408
BspHI	TCATGA	2 cut(s)	1923, 1974
BspLI	GGNNCC	5 cut(s)	84, 85, 223, 2302, 2463
BspMI	ACCTGC	1 cut(s)	2461
BspPI	GGATC	6 cut(s)	62, 475, 491, 1304, 1716, 2557
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	460
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	2 cut(s)	399, 2236
BsrFI	RCCGGY	4 cut(s)	274, 370, 374, 2361
BsrI	ACTGG	1 cut(s)	1313
BssAI	RCCGGY	4 cut(s)	274, 370, 374, 2361
BssECI	CCNNGG	7 cut(s)	200, 1489, 1566, 1824, 2274, 2534, 2567
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	1566, 1824
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	4 cut(s)	543, 1491, 2412, 2535
Bst4CI	ACNGT	6 cut(s)	1255, 1304, 1364, 1621, 2083, 2557
Bst6I	CTCTTC	4 cut(s)	253, 438, 2046, 2228
BstACI	GRCGYC	1 cut(s)	330
BstBAI	YACGTR	2 cut(s)	1028, 1907
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	8 cut(s)	49, 276, 376, 1518, 1792, 1875, 2541, 2599
BstDSI	CCRYGG	2 cut(s)	2274, 2567
BstF5I	GGATG	3 cut(s)	634, 1237, 2270
BstFNI	CGCG	2 cut(s)	338, 408
BstHHI	GCGC	1 cut(s)	410
BstMAI	GTCTC	4 cut(s)	308, 460, 1476, 2437
BstMCI	CGRYCG	3 cut(s)	375, 417, 2573
BstNI	CCWGG	4 cut(s)	543, 1491, 2412, 2535
BstNSI	RCATGY	3 cut(s)	835, 1520, 1877
BstSCI	CCNGG	5 cut(s)	541, 714, 1489, 2410, 2533
BstSFI	CTRYAG	2 cut(s)	555, 2553
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	2 cut(s)	338, 408
BstV1I	GCAGC	8 cut(s)	415, 644, 645, 1409, 1653, 2329, 2581, 2593
BstX2I	RGATCY	3 cut(s)	467, 496, 2549
BstXI	CCANNNNNNTGG	1 cut(s)	1106
BstYI	RGATCY	3 cut(s)	467, 496, 2549
BstZI	CGGCCG	2 cut(s)	372, 2570
BsuRI	GGCC	8 cut(s)	374, 1183, 2129, 2303, 2462, 2525, 2539, 2572
BtgI	CCRYGG	2 cut(s)	2274, 2567
BtrI	CACGTC	1 cut(s)	1282
BtsCI	GGATG	3 cut(s)	634, 1237, 2270
BtsI	GCAGTG	1 cut(s)	1684
BtsIMutI	CAGTG	2 cut(s)	1360, 1684
BtuMI	TCGCGA	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	2461
Cac8I	GCNNGC	8 cut(s)	49, 276, 376, 1518, 1792, 1875, 2541, 2599
CaiI	CAGNNNCTG	1 cut(s)	1319
CciI	TCATGA	2 cut(s)	1923, 1974
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	4 cut(s)	274, 370, 374, 2361
Cfr13I	GGNCC	6 cut(s)	4, 83, 231, 2301, 2461, 2537
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	9 cut(s)	422, 562, 587, 835, 1324, 1439, 1497, 1541, 2558
CspAI	ACCGGT	1 cut(s)	2361
CspCI	CAANNNNNGTGG	2 cut(s)	951, 986
CviQI	GTAC	9 cut(s)	422, 562, 587, 835, 1324, 1439, 1497, 1541, 2558
DraI	TTTAAA	1 cut(s)	2200
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	2 cut(s)	372, 2570
EagI	CGGCCG	2 cut(s)	372, 2570
Eam1104I	CTCTTC	4 cut(s)	253, 438, 2046, 2228
EarI	CTCTTC	4 cut(s)	253, 438, 2046, 2228
EciI	GGCGGA	2 cut(s)	489, 2503
Ecl136II	GAGCTC	1 cut(s)	1593
EclXI	CGGCCG	2 cut(s)	372, 2570
Eco130I	CCWWGG	2 cut(s)	1566, 1824
Eco147I	AGGCCT	1 cut(s)	2129
Eco24I	GRGCYC	3 cut(s)	1251, 1595, 2402
Eco31I	GGTCTC	1 cut(s)	460
Eco47I	GGWCC	3 cut(s)	4, 83, 231
Eco52I	CGGCCG	2 cut(s)	372, 2570
Eco53kI	GAGCTC	1 cut(s)	1593
Eco57I	CTGAAG	3 cut(s)	138, 1419, 2209
Eco72I	CACGTG	1 cut(s)	1028
Eco88I	CYCGRG	1 cut(s)	1588
EcoICRI	GAGCTC	1 cut(s)	1593
EcoO109I	RGGNCCY	2 cut(s)	83, 2461
EcoRI	GAATTC	1 cut(s)	1834
EcoRII	CCWGG	4 cut(s)	541, 1489, 2410, 2533
EcoT14I	CCWWGG	2 cut(s)	1566, 1824
EcoT22I	ATGCAT	1 cut(s)	2272
EcoT38I	GRGCYC	3 cut(s)	1251, 1595, 2402
ErhI	CCWWGG	2 cut(s)	1566, 1824
Esp3I	CGTCTC	1 cut(s)	308
FalI	AAGNNNNNCTT	2 cut(s)	1040, 1072
FaqI	GGGAC	3 cut(s)	69, 1914, 2267
FauI	CCCGC	1 cut(s)	192
FauNDI	CATATG	1 cut(s)	1178
FbaI	TGATCA	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	15
FokI	GGATG	3 cut(s)	641, 1244, 2257
FriOI	GRGCYC	3 cut(s)	1251, 1595, 2402
FspBI	CTAG	7 cut(s)	95, 471, 582, 881, 1967, 2346, 2627
GlaI	GCGC	1 cut(s)	409
GsuI	CTGGAG	1 cut(s)	1176
HaeIII	GGCC	8 cut(s)	374, 1183, 2129, 2303, 2462, 2525, 2539, 2572
HapII	CCGG	7 cut(s)	275, 371, 375, 389, 413, 716, 2362
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HincII	GTYRAC	2 cut(s)	16, 1360
HindII	GTYRAC	2 cut(s)	16, 1360
HindIII	AAGCTT	1 cut(s)	1633
HpaII	CCGG	7 cut(s)	275, 371, 375, 389, 413, 716, 2362
HphI	GGTGA	5 cut(s)	77, 838, 984, 1409, 2075
Hpy166II	GTNNAC	5 cut(s)	16, 128, 587, 1360, 2041
Hpy8I	GTNNAC	5 cut(s)	16, 128, 587, 1360, 2041
Hpy99I	CGWCG	4 cut(s)	17, 332, 338, 2162
HpyAV	CCTTC	4 cut(s)	149, 295, 1098, 1303
HpyCH4III	ACNGT	6 cut(s)	1255, 1304, 1364, 1621, 2083, 2557
HpyCH4IV	ACGT	5 cut(s)	291, 1027, 1281, 1554, 1906
HpyCH4V	TGCA	8 cut(s)	128, 632, 776, 868, 1520, 1526, 1919, 2270
HpySE526I	ACGT	5 cut(s)	291, 1027, 1281, 1554, 1906
Hsp92I	GRCGYC	1 cut(s)	330
HspAI	GCGC	1 cut(s)	408
KflI	GGGWCCC	1 cut(s)	83
KroI	GCCGGC	2 cut(s)	274, 374
KroNI	GCCGGC	2 cut(s)	276, 376
Ksp22I	TGATCA	1 cut(s)	576
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	3 cut(s)	415, 2165, 2536
Lsp1109I	GCAGC	8 cut(s)	415, 644, 645, 1409, 1653, 2329, 2581, 2593
LweI	GCATC	7 cut(s)	619, 1222, 1906, 2056, 2098, 2257, 2279
MaeI	CTAG	7 cut(s)	95, 471, 582, 881, 1967, 2346, 2627
MaeII	ACGT	5 cut(s)	291, 1027, 1281, 1554, 1906
MaeIII	GTNAC	6 cut(s)	53, 787, 1186, 1550, 1909, 2380
MbiI	CCGCTC	1 cut(s)	187
MfeI	CAATTG	2 cut(s)	1221, 1521
MflI	RGATCY	3 cut(s)	467, 496, 2549
MhlI	GDGCHC	4 cut(s)	130, 1251, 1595, 2402
MlyI	GAGTC	5 cut(s)	11, 188, 220, 313, 528
MmeI	TCCRAC	1 cut(s)	640
Mph1103I	ATGCAT	1 cut(s)	2272
MroNI	GCCGGC	2 cut(s)	274, 374
MseI	TTAA	6 cut(s)	1059, 1668, 1859, 2013, 2199, 2369
MspA1I	CMGCKG	3 cut(s)	635, 2342, 2543
MspI	CCGG	7 cut(s)	275, 371, 375, 389, 413, 716, 2362
MspR9I	CCNGG	5 cut(s)	543, 716, 1491, 2412, 2535
MunI	CAATTG	2 cut(s)	1221, 1521
Mva1269I	GAATGC	1 cut(s)	1435
MvaI	CCWGG	4 cut(s)	543, 1491, 2412, 2535
MvnI	CGCG	2 cut(s)	338, 408
NaeI	GCCGGC	2 cut(s)	276, 376
NciI	CCSGG	1 cut(s)	716
NdeI	CATATG	1 cut(s)	1178
NgoMIV	GCCGGC	2 cut(s)	274, 374
NlaIV	GGNNCC	5 cut(s)	84, 85, 223, 2302, 2463
NmeAIII	GCCGAG	5 cut(s)	145, 150, 181, 235, 240
NmuCI	GTSAC	3 cut(s)	53, 1186, 2380
NruI	TCGCGA	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	2272
NspI	RCATGY	3 cut(s)	835, 1520, 1877
NspV	TTCGAA	1 cut(s)	674
PaeI	GCATGC	2 cut(s)	1520, 1877
PaeR7I	CTCGAG	1 cut(s)	1588
PagI	TCATGA	2 cut(s)	1923, 1974
PaqCI	CACCTGC	1 cut(s)	2461
PceI	AGGCCT	1 cut(s)	2129
PciI	ACATGT	1 cut(s)	831
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	1551
PctI	GAATGC	1 cut(s)	1435
PdiI	GCCGGC	2 cut(s)	276, 376
PfeI	GAWTC	7 cut(s)	26, 639, 1123, 1576, 1771, 1779, 1978
PflFI	GACNNNGTC	1 cut(s)	332
PflMI	CCANNNNNTGG	2 cut(s)	79, 2546
PinAI	ACCGGT	1 cut(s)	2361
PleI	GAGTC	5 cut(s)	11, 188, 219, 313, 528
PmaCI	CACGTG	1 cut(s)	1028
PmlI	CACGTG	1 cut(s)	1028
PpsI	GAGTC	5 cut(s)	11, 188, 219, 313, 528
Ppu21I	YACGTR	2 cut(s)	1028, 1907
PpuMI	RGGWCCY	1 cut(s)	83
PscI	ACATGT	1 cut(s)	831
PsiI	TTATAA	1 cut(s)	2376
Psp124BI	GAGCTC	1 cut(s)	1595
Psp5II	RGGWCCY	1 cut(s)	83
Psp6I	CCWGG	4 cut(s)	541, 1489, 2410, 2533
PspCI	CACGTG	1 cut(s)	1028
PspGI	CCWGG	4 cut(s)	541, 1489, 2410, 2533
PspN4I	GGNNCC	5 cut(s)	84, 85, 223, 2302, 2463
PspPI	GGNCC	6 cut(s)	4, 83, 231, 2301, 2461, 2537
PspPPI	RGGWCCY	1 cut(s)	83
PspXI	VCTCGAGB	1 cut(s)	1588
PstNI	CAGNNNCTG	1 cut(s)	1319
PsuI	RGATCY	3 cut(s)	467, 496, 2549
PsyI	GACNNNGTC	1 cut(s)	332
PvuII	CAGCTG	3 cut(s)	635, 2342, 2543
RruI	TCGCGA	1 cut(s)	338
RsaI	GTAC	9 cut(s)	423, 563, 588, 836, 1325, 1440, 1498, 1542, 2559
RsaNI	GTAC	9 cut(s)	422, 562, 587, 835, 1324, 1439, 1497, 1541, 2558
SacI	GAGCTC	1 cut(s)	1595
SalI	GTCGAC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	6 cut(s)	1059, 1668, 1859, 2013, 2199, 2369
Sau96I	GGNCC	6 cut(s)	4, 83, 231, 2301, 2461, 2537
SchI	GAGTC	5 cut(s)	11, 188, 220, 313, 528
ScrFI	CCNGG	5 cut(s)	543, 716, 1491, 2412, 2535
SduI	GDGCHC	4 cut(s)	130, 1251, 1595, 2402
SfaNI	GCATC	7 cut(s)	619, 1222, 1906, 2056, 2098, 2257, 2279
SfcI	CTRYAG	2 cut(s)	555, 2553
Sfr274I	CTCGAG	1 cut(s)	1588
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	3 cut(s)	4, 83, 231
SlaI	CTCGAG	1 cut(s)	1588
SmlI	CTYRAG	3 cut(s)	931, 1588, 2244
SmoI	CTYRAG	3 cut(s)	931, 1588, 2244
SpeI	ACTAGT	1 cut(s)	581
SphI	GCATGC	2 cut(s)	1520, 1877
SseBI	AGGCCT	1 cut(s)	2129
SsiI	CCGC	7 cut(s)	185, 225, 500, 1479, 1877, 2501, 2514
SspI	AATATT	2 cut(s)	898, 1018
SspMI	CTAG	7 cut(s)	95, 471, 582, 881, 1967, 2346, 2627
SstI	GAGCTC	1 cut(s)	1595
StuI	AGGCCT	1 cut(s)	2129
StyD4I	CCNGG	5 cut(s)	541, 714, 1489, 2410, 2533
StyI	CCWWGG	2 cut(s)	1566, 1824
TaaI	ACNGT	6 cut(s)	1255, 1304, 1364, 1621, 2083, 2557
TaiI	ACGT	5 cut(s)	294, 1030, 1284, 1557, 1909
TaqI	TCGA	8 cut(s)	15, 674, 808, 1091, 1545, 1589, 1838, 2160
TatI	WGTACW	3 cut(s)	1438, 1496, 1540
TauI	GCSGC	2 cut(s)	1880, 2503
TfiI	GAWTC	7 cut(s)	26, 639, 1123, 1576, 1771, 1779, 1978
Tru1I	TTAA	6 cut(s)	1059, 1668, 1859, 2013, 2199, 2369
Tru9I	TTAA	6 cut(s)	1059, 1668, 1859, 2013, 2199, 2369
TscAI	CASTG	2 cut(s)	1360, 1684
TseFI	GTSAC	3 cut(s)	53, 1186, 2380
TseI	GCWGC	8 cut(s)	428, 632, 658, 1397, 1641, 2342, 2581, 2594
Tsp45I	GTSAC	3 cut(s)	53, 1186, 2380
TspDTI	ATGAA	3 cut(s)	2021, 2180, 2277
TspGWI	ACGGA	3 cut(s)	223, 1485, 2263
TspRI	CASTG	2 cut(s)	1360, 1684
Tth111I	GACNNNGTC	1 cut(s)	332
Van91I	CCANNNNNTGG	2 cut(s)	79, 2546
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	3 cut(s)	4, 83, 231
XapI	RAATTY	4 cut(s)	1814, 1834, 2009, 2099
XceI	RCATGY	3 cut(s)	835, 1520, 1877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	885
XhoI	CTCGAG	1 cut(s)	1588
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	7 cut(s)	95, 471, 582, 881, 1967, 2346, 2627
Zsp2I	ATGCAT	1 cut(s)	2272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.