Rmu_sc0000750.1_g000017

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000750.1
OG0003635
Physical Location & Seq
Reverse (-)
74009 .. 75988
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 657 bp
atggctcatagatatgcagacattgctacttatgattatgttgatgatttctgtttaaatgagcttcccgcttttattcgagacgtgctttatgaggatcattgtattttttcacggggcttaggtcttataggctcgttcgcttccatcttcgccgcgacgctatacacccaccgtctccggcactctcgtctcccaaaaacaaccaatcagagagtcatgtctagtagtaaagctgaagaacctgtaaatgagcaagcagttgcaaataagtttgctgccatgaggtctgaactcaaccaaatttactctaaaatcactgagctagagatggacgtgagtgagcactcattggtgatcaatgccatccagccactcgacccatccaggcggtgcttccgaatgattggaggtgtgctggtggagagaaccatcaaggaggtcctgcctgctgtgcagcgtaacaaagaagggattgaggaggttattactcggctgaatgaggctttggaaaggaagaaaaaagaaatttctgactttgaggctaagtacaagatccggataagaaagaatgacagtgaggagaaggatgatggtgctcgcaaagaaggaactgctcaaggagtcctggtcggccctgctggtggaagcgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

218

Amino Acids

24.66

Weight (kDa)

6.26

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 86 - 190 5.1e-26 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 558
AciI CCGC 3 cut(s) 69, 156, 391
AclWI GGATC 2 cut(s) 105, 550
AcsI RAATTY 2 cut(s) 303, 528
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 1 cut(s) 644
AjiI CACGTC 2 cut(s) 85, 337
AjnI CCWGG 2 cut(s) 386, 627
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 3 cut(s) 64, 236, 325
AluI AGCT 3 cut(s) 64, 236, 325
Alw21I GWGCWC 2 cut(s) 348, 601
Alw26I GTCTC 3 cut(s) 75, 182, 197
AlwI GGATC 2 cut(s) 105, 550
Aor13HI TCCGGA 1 cut(s) 558
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 2 cut(s) 278, 457
ApoI RAATTY 2 cut(s) 303, 528
AspS9I GGNCC 2 cut(s) 442, 635
AsuHPI GGTGA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 442
Bbv12I GWGCWC 2 cut(s) 348, 601
BbvI GCAGC 2 cut(s) 265, 469
BccI CCATC 6 cut(s) 155, 325, 374, 391, 440, 587
BciT130I CCWGG 2 cut(s) 388, 629
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 75, 182, 197
BfaI CTAG 2 cut(s) 225, 326
BisI GCNGC 3 cut(s) 156, 279, 458
BlsI GCNGC 3 cut(s) 157, 280, 459
Bme1390I CCNGG 2 cut(s) 388, 629
Bme18I GGWCC 1 cut(s) 442
BmgBI CACGTC 2 cut(s) 85, 337
BmgT120I GGNCC 2 cut(s) 442, 635
BmrFI CCNGG 2 cut(s) 388, 629
Bpu10I CCTNAGC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 558
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse3DI GCAATG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 558
BseBI CCWGG 2 cut(s) 388, 629
BseGI GGATG 3 cut(s) 366, 383, 595
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 494, 596
BseXI GCAGC 2 cut(s) 265, 469
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 1 cut(s) 636
BsiHKAI GWGCWC 2 cut(s) 348, 601
BsiSI CCGG 2 cut(s) 181, 559
BslI CCNNNNNNNGG 1 cut(s) 644
BsmAI GTCTC 3 cut(s) 75, 182, 197
BsmBI CGTCTC 3 cut(s) 75, 182, 197
BsnI GGCC 1 cut(s) 636
Bsp1286I GDGCHC 2 cut(s) 348, 601
Bsp13I TCCGGA 1 cut(s) 558
Bsp143I GATC 3 cut(s) 97, 357, 555
BspACI CCGC 3 cut(s) 69, 156, 391
BspANI GGCC 1 cut(s) 636
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 558
BspFNI CGCG 1 cut(s) 158
BspPI GGATC 2 cut(s) 105, 550
BsrDI GCAATG 1 cut(s) 21
BssMI GATC 3 cut(s) 97, 357, 555
Bst2UI CCWGG 2 cut(s) 388, 629
Bst4CI ACNGT 2 cut(s) 176, 578
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 3 cut(s) 258, 450, 601
BstDEI CTNAG 3 cut(s) 121, 321, 546
BstF5I GGATG 3 cut(s) 366, 383, 595
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 3 cut(s) 100, 360, 558
BstMAI GTCTC 3 cut(s) 75, 182, 197
BstMBI GATC 3 cut(s) 97, 357, 555
BstMWI GCNNNNNNNGC 2 cut(s) 23, 454
BstNI CCWGG 2 cut(s) 388, 629
BstSCI CCNGG 2 cut(s) 386, 627
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 265, 469
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
BsuRI GGCC 1 cut(s) 636
BtrI CACGTC 2 cut(s) 85, 337
BtsCI GGATG 3 cut(s) 366, 383, 595
BtsIMutI CAGTG 2 cut(s) 318, 583
Cac8I GCNNGC 3 cut(s) 258, 450, 601
Cfr13I GGNCC 2 cut(s) 442, 635
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 550
CviAII CATG 2 cut(s) 220, 283
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 3 cut(s) 121, 321, 546
DpnI GATC 3 cut(s) 99, 359, 557
DpnII GATC 3 cut(s) 97, 357, 555
DraI TTTAAA 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 386, 627
Esp3I CGTCTC 3 cut(s) 75, 182, 197
FaeI CATG 2 cut(s) 223, 286
FaiI YATR 9 cut(s) 9, 15, 33, 39, 93, 131, 166, 221, 284
FatI CATG 2 cut(s) 219, 282
FauI CCCGC 1 cut(s) 76
FbaI TGATCA 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 156, 279, 458
FokI GGATG 3 cut(s) 353, 370, 602
Fsp4HI GCNGC 3 cut(s) 156, 279, 458
FspBI CTAG 2 cut(s) 225, 326
GluI GCNGC 3 cut(s) 156, 279, 458
HaeIII GGCC 1 cut(s) 636
HapII CCGG 2 cut(s) 181, 559
HgaI GACGC 1 cut(s) 169
Hin1II CATG 2 cut(s) 223, 286
HinfI GANTC 2 cut(s) 216, 624
HpaII CCGG 2 cut(s) 181, 559
HphI GGTGA 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 213, 292, 401, 535
Hpy188III TCNNGA 2 cut(s) 80, 559
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 3 cut(s) 464, 580, 602
HpyCH4III ACNGT 2 cut(s) 176, 578
HpyCH4IV ACGT 2 cut(s) 84, 336
HpyCH4V TGCA 3 cut(s) 17, 266, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 454
HpyF3I CTNAG 3 cut(s) 121, 321, 546
HpySE526I ACGT 2 cut(s) 84, 336
Hsp92II CATG 2 cut(s) 223, 286
Kpn2I TCCGGA 1 cut(s) 558
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 3 cut(s) 97, 357, 555
Lsp1109I GCAGC 2 cut(s) 265, 469
MaeI CTAG 2 cut(s) 225, 326
MaeII ACGT 2 cut(s) 84, 336
MaeIII GTNAC 1 cut(s) 461
MalI GATC 3 cut(s) 99, 359, 557
MboI GATC 3 cut(s) 97, 357, 555
MboII GAAGA 3 cut(s) 142, 251, 529
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 2 cut(s) 348, 601
MluCI AATT 2 cut(s) 303, 528
MlyI GAGTC 2 cut(s) 225, 633
MnlI CCTC 9 cut(s) 88, 279, 404, 433, 472, 475, 496, 535, 574
MroI TCCGGA 1 cut(s) 558
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 2 cut(s) 181, 559
MspR9I CCNGG 2 cut(s) 388, 629
MvaI CCWGG 2 cut(s) 388, 629
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 23, 454
NdeII GATC 3 cut(s) 97, 357, 555
NlaIII CATG 2 cut(s) 223, 286
NmeAIII GCCGAG 1 cut(s) 472
PkrI GCNGC 3 cut(s) 157, 280, 459
PleI GAGTC 2 cut(s) 224, 632
PpsI GAGTC 2 cut(s) 224, 632
PpuMI RGGWCCY 1 cut(s) 442
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 386, 627
PspGI CCWGG 2 cut(s) 386, 627
PspPI GGNCC 2 cut(s) 442, 635
PspPPI RGGWCCY 1 cut(s) 442
PsuI RGATCY 1 cut(s) 555
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 3 cut(s) 156, 279, 458
Sau3AI GATC 3 cut(s) 97, 357, 555
Sau96I GGNCC 2 cut(s) 442, 635
SchI GAGTC 2 cut(s) 225, 633
ScrFI CCNGG 2 cut(s) 388, 629
SduI GDGCHC 2 cut(s) 348, 601
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 618
SmoI CTYRAG 1 cut(s) 618
Sse9I AATT 2 cut(s) 303, 528
SsiI CCGC 3 cut(s) 69, 156, 391
SspMI CTAG 2 cut(s) 225, 326
StyD4I CCNGG 2 cut(s) 386, 627
TaaI ACNGT 2 cut(s) 176, 578
TaiI ACGT 2 cut(s) 87, 339
TaqI TCGA 2 cut(s) 79, 378
TasI AATT 2 cut(s) 303, 528
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 2 cut(s) 325, 583
TseI GCWGC 2 cut(s) 278, 457
TspRI CASTG 2 cut(s) 325, 583
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 2 cut(s) 303, 528
XspI CTAG 2 cut(s) 225, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.