Rmu_sc0000902.1_g000013

Calcium uptake protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000902.1
OG0005926
Physical Location & Seq
Forward (+)
30443 .. 33447
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1266 bp
atggtcatcaaaatcaacgtccacccgttccttctcatatggagtgactcttccatcaagcgatccggacagcttcgggctcctattcttcgtcaccatgccatcagccgatcatatgaccgtccatcgaacagtccagatgccttggggcttctatttgctgaaaccattgacttgtcagttaccataggacctgaagtgagcctagggctcctattttctgtgtacatgagcctctcattgaccttcgattttcatgaccctttggcttcctcaccagacttcgtctccaatgctcttgatacttctctggttgatcagccacatgcctgggggacgatgacatctcgttctcttggaaagccggccaatcttgtaaattacttgctgaaacacttcttggttttgatgagcgcccagccgagccttgaaattgacgttgggtggtggcgctctcgcacattgttcagtaaatcacaaccctcatcatcgccatcttcgtcttcttcgatcagctcatcatgtggtggcacttttggctgtaacaatgagtacaattacaagagtagatcaggctcctctaataagcgtagtacatttaatttgattcagaggtcagtttcttcaggggttctaattctcgggtcaagcataggctattcttattggtcttctgcttccttggatccaaatgcctctgtttgttttgctgattccaaagaggaggcagcatgggcaatcgagcaggacccagaacaattcaagtccctcttttcaattcgaacccctagcggagagtgctttatgacgccgggggacttgatgcgagctgttgttcctgtgtttcctccctatgattcaaatcgggttcgagaaggctctttaagaggggaaaatgttcctggagaattgcaatgtgctccttctaaattcttcatgcttttcgacactgatggtgatggcctcatttcatttcaagagtacatatttttcgtcactctcctcagcattcctgaatcgagttttactgtggcttttaaaatgttcgatcttgacaacagtggagacattgataaggaagagtttaacagagttatggcattgatgcgaaatcacaacaataaaaacaaggacggccacagggtcaaatttggtgtagaagagggaggcatacttgagtacttcttcggcaaagacggcaaaaaaggccttaagcatgaaagatttgttcagtttttcagggatttacacgaggaagtacgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

421

Amino Acids

46.9

Weight (kDa)

5.96

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_5 PF13202 345 - 366 2.2e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 65
AciI CCGC 1 cut(s) 792
AclWI GGATC 3 cut(s) 57, 680, 693
AcoI YGGCCR 2 cut(s) 366, 1135
AcsI RAATTY 2 cut(s) 929, 1148
AcuI CTGAAG 2 cut(s) 216, 609
AcyI GRCGYC 1 cut(s) 809
AfaI GTAC 6 cut(s) 227, 554, 595, 983, 1181, 1260
AflII CTTAAG 1 cut(s) 1211
AgsI TTSAA 5 cut(s) 431, 763, 777, 861, 977
AjnI CCWGG 2 cut(s) 329, 901
AjuI GAANNNNNNNTTGG 4 cut(s) 383, 415, 423, 455
AluBI AGCT 3 cut(s) 73, 516, 830
AluI AGCT 3 cut(s) 73, 516, 830
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 2 cut(s) 292, 1059
AlwI GGATC 3 cut(s) 57, 680, 693
Ama87I CYCGRG 1 cut(s) 641
Aor13HI TCCGGA 1 cut(s) 65
AoxI GGCC 4 cut(s) 366, 961, 1135, 1207
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 2 cut(s) 929, 1148
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 2 cut(s) 395, 897
AspA2I CCTAGG 1 cut(s) 205
AspLEI GCGC 2 cut(s) 416, 453
AspS9I GGNCC 2 cut(s) 191, 748
AsuC2I CCSGG 1 cut(s) 813
AsuHPI GGTGA 3 cut(s) 86, 267, 968
AsuII TTCGAA 1 cut(s) 781
AvaI CYCGRG 1 cut(s) 641
AvaII GGWCC 2 cut(s) 191, 748
AvrII CCTAGG 1 cut(s) 205
BamHI GGATCC 1 cut(s) 685
BanII GRGCYC 2 cut(s) 82, 213
BauI CACGAG 1 cut(s) 1250
BbsI GAAGAC 2 cut(s) 495, 663
Bbv12I GWGCWC 1 cut(s) 922
BbvCI CCTCAGC 1 cut(s) 1004
BbvI GCAGC 1 cut(s) 740
BccI CCATC 6 cut(s) 62, 110, 133, 502, 947, 953
BceAI ACGGC 2 cut(s) 1150, 1213
BciT130I CCWGG 2 cut(s) 331, 903
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 813
BcoDI GTCTC 2 cut(s) 292, 1059
BfaI CTAG 2 cut(s) 206, 789
BfoI RGCGCY 2 cut(s) 417, 454
BfrI CTTAAG 1 cut(s) 1211
BisI GCNGC 1 cut(s) 729
BlnI CCTAGG 1 cut(s) 205
BlsI GCNGC 1 cut(s) 730
BmcAI AGTACT 1 cut(s) 1181
Bme1390I CCNGG 3 cut(s) 331, 813, 903
Bme18I GGWCC 2 cut(s) 191, 748
BmeT110I CYCGRG 1 cut(s) 641
BmgT120I GGNCC 2 cut(s) 191, 748
BmiI GGNNCC 5 cut(s) 81, 212, 577, 687, 750
BmrFI CCNGG 3 cut(s) 331, 813, 903
BmsI GCATC 3 cut(s) 130, 813, 1095
BpiI GAAGAC 2 cut(s) 495, 663
BpmI CTGGAG 1 cut(s) 924
Bpu10I CCTNAGC 1 cut(s) 1004
Bpu14I TTCGAA 1 cut(s) 781
BpuEI CTTGAG 1 cut(s) 1196
BpuMI CCSGG 1 cut(s) 813
BsaBI GATNNNNATC 1 cut(s) 861
BsaHI GRCGYC 1 cut(s) 809
BsaJI CCNNGG 5 cut(s) 144, 205, 330, 681, 812
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bse118I RCCGGY 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 920
Bse8I GATNNNNATC 1 cut(s) 861
BseAI TCCGGA 1 cut(s) 65
BseBI CCWGG 2 cut(s) 331, 903
BseDI CCNNGG 5 cut(s) 144, 205, 330, 681, 812
BseJI GATNNNNATC 1 cut(s) 861
BseMI GCAATG 1 cut(s) 920
BseMII CTCAG 1 cut(s) 1018
BseRI GAGGAG 3 cut(s) 568, 737, 992
BseXI GCAGC 1 cut(s) 740
BseYI CCCAGC 1 cut(s) 417
BshFI GGCC 4 cut(s) 368, 963, 1137, 1209
BsiHKAI GWGCWC 1 cut(s) 922
BsiHKCI CYCGRG 1 cut(s) 641
BsiSI CCGG 3 cut(s) 66, 365, 812
BslFI GGGAC 3 cut(s) 349, 751, 830
BsmAI GTCTC 2 cut(s) 292, 1059
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 3 cut(s) 349, 751, 830
BsmI GAATGC 1 cut(s) 1008
BsnI GGCC 4 cut(s) 368, 963, 1137, 1209
BsoBI CYCGRG 1 cut(s) 641
Bsp119I TTCGAA 1 cut(s) 781
Bsp1286I GDGCHC 3 cut(s) 82, 213, 922
Bsp13I TCCGGA 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 7 cut(s) 62, 110, 316, 510, 569, 685, 1048
BspACI CCGC 1 cut(s) 792
BspANI GGCC 4 cut(s) 368, 963, 1137, 1209
BspCNI CTCAG 1 cut(s) 1017
BspEI TCCGGA 1 cut(s) 65
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 5 cut(s) 81, 212, 577, 687, 750
BspPI GGATC 3 cut(s) 57, 680, 693
BspT104I TTCGAA 1 cut(s) 781
BspTI CTTAAG 1 cut(s) 1211
BsrDI GCAATG 1 cut(s) 920
BsrFI RCCGGY 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 5 cut(s) 144, 205, 330, 681, 812
BssMI GATC 7 cut(s) 62, 110, 316, 510, 569, 685, 1048
BssNI GRCGYC 1 cut(s) 809
BssSI CACGAG 1 cut(s) 1250
BssT1I CCWWGG 3 cut(s) 144, 205, 681
Bst2BI CACGAG 1 cut(s) 1250
Bst2UI CCWGG 2 cut(s) 331, 903
Bst4CI ACNGT 4 cut(s) 122, 134, 1030, 1061
Bst6I CTCTTC 3 cut(s) 55, 1074, 1155
BstACI GRCGYC 1 cut(s) 809
BstAFI CTTAAG 1 cut(s) 1211
BstAUI TGTACA 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 781
BstC8I GCNNGC 2 cut(s) 366, 828
BstDEI CTNAG 1 cut(s) 1004
BstH2I RGCGCY 2 cut(s) 417, 454
BstHHI GCGC 2 cut(s) 416, 453
BstKTI GATC 7 cut(s) 65, 113, 319, 513, 572, 688, 1051
BstMAI GTCTC 2 cut(s) 292, 1059
BstMBI GATC 7 cut(s) 62, 110, 316, 510, 569, 685, 1048
BstMWI GCNNNNNNNGC 5 cut(s) 537, 734, 798, 1197, 1206
BstNI CCWGG 2 cut(s) 331, 903
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 3 cut(s) 329, 811, 901
BstV1I GCAGC 1 cut(s) 740
BstV2I GAAGAC 2 cut(s) 495, 663
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 330
BstYI RGATCY 1 cut(s) 685
BsuRI GGCC 4 cut(s) 368, 963, 1137, 1209
BtgZI GCGATG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 948, 1066
Cac8I GCNNGC 2 cut(s) 366, 828
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 416, 453
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 191, 748
CseI GACGC 1 cut(s) 817
Csp6I GTAC 6 cut(s) 226, 553, 594, 982, 1180, 1259
CviAII CATG 8 cut(s) 98, 229, 257, 326, 522, 732, 937, 1217
CviQI GTAC 6 cut(s) 226, 553, 594, 982, 1180, 1259
DdeI CTNAG 1 cut(s) 1004
DpnI GATC 7 cut(s) 64, 112, 318, 512, 571, 687, 1050
DpnII GATC 7 cut(s) 62, 110, 316, 510, 569, 685, 1048
DraI TTTAAA 1 cut(s) 1039
EaeI YGGCCR 2 cut(s) 366, 1135
Eam1104I CTCTTC 3 cut(s) 55, 1074, 1155
EarI CTCTTC 3 cut(s) 55, 1074, 1155
Eco130I CCWWGG 3 cut(s) 144, 205, 681
Eco147I AGGCCT 1 cut(s) 1209
Eco24I GRGCYC 2 cut(s) 82, 213
Eco47I GGWCC 2 cut(s) 191, 748
Eco57I CTGAAG 2 cut(s) 216, 609
Eco88I CYCGRG 1 cut(s) 641
EcoO109I RGGNCCY 2 cut(s) 191, 748
EcoRII CCWGG 2 cut(s) 329, 901
EcoT14I CCWWGG 3 cut(s) 144, 205, 681
EcoT38I GRGCYC 2 cut(s) 82, 213
ErhI CCWWGG 3 cut(s) 144, 205, 681
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 8 cut(s) 101, 232, 260, 329, 525, 735, 940, 1220
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FaqI GGGAC 3 cut(s) 349, 751, 830
FatI CATG 8 cut(s) 97, 228, 256, 325, 521, 731, 936, 1216
FauNDI CATATG 2 cut(s) 38, 115
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 729
FriOI GRGCYC 2 cut(s) 82, 213
Fsp4HI GCNGC 1 cut(s) 729
FspBI CTAG 2 cut(s) 206, 789
GlaI GCGC 2 cut(s) 415, 452
GluI GCNGC 1 cut(s) 729
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 924
HaeII RGCGCY 2 cut(s) 417, 454
HaeIII GGCC 4 cut(s) 368, 963, 1137, 1209
HapII CCGG 3 cut(s) 66, 365, 812
HgaI GACGC 1 cut(s) 817
HhaI GCGC 2 cut(s) 416, 453
Hin1I GRCGYC 1 cut(s) 809
Hin1II CATG 8 cut(s) 101, 232, 260, 329, 525, 735, 940, 1220
Hin6I GCGC 2 cut(s) 414, 451
HinP1I GCGC 2 cut(s) 414, 451
HinfI GANTC 5 cut(s) 47, 607, 713, 857, 1016
HpaII CCGG 3 cut(s) 66, 365, 812
HphI GGTGA 3 cut(s) 86, 267, 968
Hpy166II GTNNAC 2 cut(s) 22, 226
Hpy188I TCNGA 1 cut(s) 612
Hpy188III TCNNGA 8 cut(s) 66, 137, 257, 299, 872, 977, 1013, 1052
Hpy8I GTNNAC 2 cut(s) 22, 226
HpyAV CCTTC 4 cut(s) 41, 256, 869, 933
HpyCH4III ACNGT 4 cut(s) 122, 134, 1030, 1061
HpyCH4IV ACGT 3 cut(s) 18, 438, 1261
HpyCH4V TGCA 1 cut(s) 913
HpyF10VI GCNNNNNNNGC 5 cut(s) 537, 734, 798, 1197, 1206
HpyF3I CTNAG 1 cut(s) 1004
HpySE526I ACGT 3 cut(s) 18, 438, 1261
Hsp92I GRCGYC 1 cut(s) 809
Hsp92II CATG 8 cut(s) 101, 232, 260, 329, 525, 735, 940, 1220
HspAI GCGC 2 cut(s) 414, 451
Kpn2I TCCGGA 1 cut(s) 65
KroI GCCGGC 1 cut(s) 364
KroNI GCCGGC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 7 cut(s) 62, 110, 316, 510, 569, 685, 1048
LmnI GCTCC 4 cut(s) 85, 216, 581, 925
Lsp1109I GCAGC 1 cut(s) 740
LweI GCATC 3 cut(s) 130, 813, 1095
MaeI CTAG 2 cut(s) 206, 789
MaeII ACGT 3 cut(s) 18, 438, 1261
MaeIII GTNAC 5 cut(s) 44, 92, 181, 542, 994
MalI GATC 7 cut(s) 64, 112, 318, 512, 571, 687, 1050
MboI GATC 7 cut(s) 62, 110, 316, 510, 569, 685, 1048
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 3 cut(s) 82, 213, 922
MlyI GAGTC 1 cut(s) 41
MroI TCCGGA 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 364
MroXI GAANNNNTTC 2 cut(s) 395, 897
MseI TTAA 6 cut(s) 600, 884, 1038, 1086, 1212, 1264
MspCI CTTAAG 1 cut(s) 1211
MspI CCGG 3 cut(s) 66, 365, 812
MspR9I CCNGG 3 cut(s) 331, 813, 903
Mva1269I GAATGC 1 cut(s) 1008
MvaI CCWGG 2 cut(s) 331, 903
MwoI GCNNNNNNNGC 5 cut(s) 537, 734, 798, 1197, 1206
NaeI GCCGGC 1 cut(s) 366
NciI CCSGG 1 cut(s) 813
NdeI CATATG 2 cut(s) 38, 115
NdeII GATC 7 cut(s) 62, 110, 316, 510, 569, 685, 1048
NgoMIV GCCGGC 1 cut(s) 364
NlaIII CATG 8 cut(s) 101, 232, 260, 329, 525, 735, 940, 1220
NlaIV GGNNCC 5 cut(s) 81, 212, 577, 687, 750
NmeAIII GCCGAG 1 cut(s) 447
NmuCI GTSAC 3 cut(s) 44, 92, 994
NspI RCATGY 1 cut(s) 329
NspV TTCGAA 1 cut(s) 781
PagI TCATGA 1 cut(s) 256
PceI AGGCCT 1 cut(s) 1209
PcsI WCGNNNNNNNCGW 2 cut(s) 497, 506
PctI GAATGC 1 cut(s) 1008
PdiI GCCGGC 1 cut(s) 366
PdmI GAANNNNTTC 2 cut(s) 395, 897
PfeI GAWTC 4 cut(s) 607, 713, 857, 1016
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 901
PkrI GCNGC 1 cut(s) 730
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PpuMI RGGWCCY 2 cut(s) 191, 748
Psp5II RGGWCCY 2 cut(s) 191, 748
Psp6I CCWGG 2 cut(s) 329, 901
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 2 cut(s) 329, 901
PspN4I GGNNCC 5 cut(s) 81, 212, 577, 687, 750
PspPI GGNCC 2 cut(s) 191, 748
PspPPI RGGWCCY 2 cut(s) 191, 748
PsuI RGATCY 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 6 cut(s) 227, 554, 595, 983, 1181, 1260
RsaNI GTAC 6 cut(s) 226, 553, 594, 982, 1180, 1259
SaqAI TTAA 6 cut(s) 600, 884, 1038, 1086, 1212, 1264
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 7 cut(s) 62, 110, 316, 510, 569, 685, 1048
Sau96I GGNCC 2 cut(s) 191, 748
ScaI AGTACT 1 cut(s) 1181
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 3 cut(s) 331, 813, 903
SduI GDGCHC 3 cut(s) 82, 213, 922
SetI ASST 9 cut(s) 21, 75, 196, 248, 441, 518, 617, 832, 1264
SfaNI GCATC 3 cut(s) 130, 813, 1095
SfuI TTCGAA 1 cut(s) 781
SinI GGWCC 2 cut(s) 191, 748
SmlI CTYRAG 2 cut(s) 1175, 1211
SmoI CTYRAG 2 cut(s) 1175, 1211
SseBI AGGCCT 1 cut(s) 1209
SsiI CCGC 1 cut(s) 792
SspMI CTAG 2 cut(s) 206, 789
StuI AGGCCT 1 cut(s) 1209
StyD4I CCNGG 3 cut(s) 329, 811, 901
StyI CCWWGG 3 cut(s) 144, 205, 681
TaaI ACNGT 4 cut(s) 122, 134, 1030, 1061
TaiI ACGT 3 cut(s) 21, 441, 1264
TaqI TCGA 9 cut(s) 128, 249, 509, 741, 781, 871, 945, 1019, 1047
TatI WGTACW 5 cut(s) 225, 552, 593, 981, 1179
TfiI GAWTC 4 cut(s) 607, 713, 857, 1016
Tru1I TTAA 6 cut(s) 600, 884, 1038, 1086, 1212, 1264
Tru9I TTAA 6 cut(s) 600, 884, 1038, 1086, 1212, 1264
TscAI CASTG 2 cut(s) 955, 1066
TseFI GTSAC 3 cut(s) 44, 92, 994
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 3 cut(s) 44, 92, 994
TspDTI ATGAA 4 cut(s) 245, 925, 960, 1233
TspRI CASTG 2 cut(s) 955, 1066
Tth111I GACNNNGTC 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 1211
VpaK11BI GGWCC 2 cut(s) 191, 748
XapI RAATTY 2 cut(s) 929, 1148
XceI RCATGY 1 cut(s) 329
XmaJI CCTAGG 1 cut(s) 205
XmnI GAANNNNTTC 2 cut(s) 395, 897
XspI CTAG 2 cut(s) 206, 789
ZrmI AGTACT 1 cut(s) 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.