Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0011566

Physical Location & Seq

Genomic Coordinates Reverse (-)

85437 .. 89124

Gene Structure 3688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggcagcaatttctggcggttcaagaggttctgaacttctgcaggccggtcctgccactttctggccggttctggaagtgaaatttccgatagtggattctggagtcaggaactcggtgttaaccaaatatgatggtggaatatggtctgaaagattgcgaaccgggcagagtttgttgttatcttctttaggccggttcggtacttttctggccggttttggtgacgccgccggtggttctgggttcctgggattgagatcttcaagatgcgccatcaccgacgctagtcgagggaaacaccccacagccactgccgacttcattactgcccaactcaaacgggtcaacgtcgtcttccctgccaatttgaacaccaacactcgctatccagcctataaggatgacgccaatcggcgcatcaccgtccaatatccggcctctgcagtgctctcgacctccaatctccggcttctgtggcgttctcgacctccaagtcaccatcgacggaggagatcagttgaagaaatcgttattgcaaacgatgtcgtcttcgaggttgcaaatctcaggggcgatggagccggactagctgaacttagagagaatggggtcctccgactcgccgcggaggttaatgtcgatgacatggctagcaaaagcttgggtcttataactggtcttcgtattgctatcgatcttcatatagataatcttgaggttgaatcggattcagctatccttatcaaccttcttaagagttctgacacagggctgcctctaatgcctaacttcattgtccaagacgtccttgatggtgctaatggccttgtaaggcctagagctgttgccacagctatttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

30.89

Weight (kDa)

9.4

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25371
rosa_chinensis	RchiOBHm_Chr6g0258161
rosa_laevigata	RLG00000034050
rosa_multiflora	Rmu_sc0000594.1_g000077 Rmu_sc0000929.1_g000024 Rmu_sc0001155.1_g000027 Rmu_sc0003441.1_g000089 Rmu_ssc0000348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00117050 Rroxscaffold_3G00272090 Rroxscaffold_5G00352490 Rroxscaffold_6G00430510
rosa_samantha	Rh1AG037700 Rh1AG292100 Rh1AG331700 Rh1BG100900 Rh2BG481700 Rh3BG200600 Rh3BG302000 Rh3DG005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
AasI	GACNNNNNNGTC	1 cut(s)	495
AatII	GACGTC	1 cut(s)	810
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccII	CGCG	1 cut(s)	629
AciI	CCGC	4 cut(s)	18, 231, 627, 629
AcoI	YGGCCR	2 cut(s)	65, 213
AcsI	RAATTY	1 cut(s)	83
AcyI	GRCGYC	3 cut(s)	228, 408, 807
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	63, 436, 468
AflII	CTTAAG	1 cut(s)	755
AgsI	TTSAA	5 cut(s)	24, 267, 373, 524, 725
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	5 cut(s)	593, 663, 737, 845, 857
AluI	AGCT	5 cut(s)	593, 663, 737, 845, 857
Alw21I	GWGCWC	1 cut(s)	453
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	7 cut(s)	45, 65, 193, 213, 438, 826, 836
ApeKI	GCWGC	2 cut(s)	5, 775
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	275, 420
AspS9I	GGNCC	2 cut(s)	50, 613
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	4 cut(s)	236, 271, 415, 491
AsuNHI	GCTAGC	1 cut(s)	653
AvaII	GGWCC	2 cut(s)	50, 613
BbsI	GAAGAC	3 cut(s)	349, 544, 674
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	17, 762
BccI	CCATC	5 cut(s)	128, 284, 510, 572, 809
BcgI	CGANNNNNNTGC	2 cut(s)	435, 469
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	4 cut(s)	288, 590, 654, 840
BfmI	CTRYAG	2 cut(s)	41, 444
BfrI	CTTAAG	1 cut(s)	755
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	4 cut(s)	6, 231, 627, 776
BlsI	GCNGC	4 cut(s)	7, 232, 628, 777
Bme1390I	CCNGG	2 cut(s)	166, 251
Bme18I	GGWCC	2 cut(s)	50, 613
BmgT120I	GGNCC	2 cut(s)	50, 613
BmiI	GGNNCC	3 cut(s)	248, 583, 614
BmrFI	CCNGG	2 cut(s)	166, 251
BmsI	GCATC	2 cut(s)	260, 429
BmtI	GCTAGC	1 cut(s)	657
BoxI	GACNNNNGTC	1 cut(s)	288
BpiI	GAAGAC	3 cut(s)	349, 544, 674
BpmI	CTGGAG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	259
BsaHI	GRCGYC	3 cut(s)	228, 408, 807
BsaJI	CCNNGG	2 cut(s)	250, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 436, 468
Bse118I	RCCGGY	5 cut(s)	47, 67, 195, 215, 233
Bse1I	ACTGG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	250, 627
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	259
BseLI	CCNNNNNNNGG	3 cut(s)	63, 436, 468
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	17, 762
Bsh1236I	CGCG	1 cut(s)	629
BshFI	GGCC	7 cut(s)	47, 67, 195, 215, 440, 828, 838
BshVI	ATCGAT	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	9 cut(s)	48, 68, 165, 196, 216, 234, 437, 469, 585
BslI	CCNNNNNNNGG	3 cut(s)	63, 436, 468
BsnI	GGCC	7 cut(s)	47, 67, 195, 215, 440, 828, 838
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	3 cut(s)	260, 515, 697
BspACI	CCGC	4 cut(s)	18, 231, 627, 629
BspANI	GGCC	7 cut(s)	47, 67, 195, 215, 440, 828, 838
BspCNI	CTCAG	1 cut(s)	582
BspDI	ATCGAT	1 cut(s)	696
BspFNI	CGCG	1 cut(s)	629
BspLI	GGNNCC	3 cut(s)	248, 583, 614
BspMAI	CTGCAG	2 cut(s)	45, 448
BspOI	GCTAGC	1 cut(s)	657
BspTI	CTTAAG	1 cut(s)	755
BsrFI	RCCGGY	5 cut(s)	47, 67, 195, 215, 233
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	5 cut(s)	47, 67, 195, 215, 233
BssECI	CCNNGG	2 cut(s)	250, 627
BssMI	GATC	3 cut(s)	260, 515, 697
BssNI	GRCGYC	3 cut(s)	228, 408, 807
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	427
BstACI	GRCGYC	3 cut(s)	228, 408, 807
BstAFI	CTTAAG	1 cut(s)	755
BstC8I	GCNNGC	2 cut(s)	45, 655
BstDEI	CTNAG	3 cut(s)	569, 599, 864
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	629
BstHHI	GCGC	2 cut(s)	275, 420
BstKTI	GATC	3 cut(s)	263, 518, 700
BstMBI	GATC	3 cut(s)	260, 515, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 166, 478, 590, 784
BstNI	CCWGG	1 cut(s)	251
BstPAI	GACNNNNGTC	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	164, 249
BstSFI	CTRYAG	2 cut(s)	41, 444
BstUI	CGCG	1 cut(s)	629
BstV1I	GCAGC	2 cut(s)	17, 762
BstV2I	GAAGAC	3 cut(s)	349, 544, 674
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	696
BsuRI	GGCC	7 cut(s)	47, 67, 195, 215, 440, 828, 838
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	627
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	2 cut(s)	312, 453
BtsIMutI	CAGTG	2 cut(s)	312, 453
Cac8I	GCNNGC	2 cut(s)	45, 655
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	2 cut(s)	275, 420
Cfr10I	RCCGGY	5 cut(s)	47, 67, 195, 215, 233
Cfr13I	GGNCC	2 cut(s)	50, 613
Cfr42I	CCGCGG	1 cut(s)	630
ClaI	ATCGAT	1 cut(s)	696
CseI	GACGC	3 cut(s)	236, 293, 416
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	649
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	3 cut(s)	569, 599, 864
DpnI	GATC	3 cut(s)	262, 517, 699
DpnII	GATC	3 cut(s)	260, 515, 697
DrdI	GACNNNNNNGTC	1 cut(s)	495
DseDI	GACNNNNNNGTC	1 cut(s)	495
EaeI	YGGCCR	2 cut(s)	65, 213
Eco147I	AGGCCT	1 cut(s)	838
Eco47I	GGWCC	2 cut(s)	50, 613
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	652
FaiI	YATR	7 cut(s)	132, 145, 399, 650, 674, 705, 707
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FatI	CATG	1 cut(s)	648
Fnu4HI	GCNGC	4 cut(s)	6, 231, 627, 776
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	6, 231, 627, 776
FspBI	CTAG	4 cut(s)	288, 590, 654, 840
GlaI	GCGC	2 cut(s)	274, 419
GluI	GCNGC	4 cut(s)	6, 231, 627, 776
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	7 cut(s)	47, 67, 195, 215, 440, 828, 838
HapII	CCGG	9 cut(s)	48, 68, 165, 196, 216, 234, 437, 469, 585
HgaI	GACGC	3 cut(s)	236, 293, 416
HhaI	GCGC	2 cut(s)	275, 420
Hin1I	GRCGYC	3 cut(s)	228, 408, 807
Hin1II	CATG	1 cut(s)	652
Hin6I	GCGC	2 cut(s)	273, 418
HinP1I	GCGC	2 cut(s)	273, 418
HincII	GTYRAC	2 cut(s)	123, 349
HindII	GTYRAC	2 cut(s)	123, 349
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	5 cut(s)	98, 105, 621, 725, 731
HpaI	GTTAAC	1 cut(s)	123
HpaII	CCGG	9 cut(s)	48, 68, 165, 196, 216, 234, 437, 469, 585
HphI	GGTGA	4 cut(s)	236, 271, 415, 491
Hpy166II	GTNNAC	2 cut(s)	123, 349
Hpy188I	TCNGA	6 cut(s)	34, 90, 151, 620, 730, 766
Hpy188III	TCNNGA	8 cut(s)	24, 74, 102, 109, 267, 454, 486, 716
Hpy8I	GTNNAC	2 cut(s)	123, 349
Hpy99I	CGWCG	3 cut(s)	287, 356, 510
HpyAV	CCTTC	1 cut(s)	761
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	2 cut(s)	351, 807
HpyCH4V	TGCA	4 cut(s)	43, 446, 539, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 166, 478, 590, 784
HpyF3I	CTNAG	3 cut(s)	569, 599, 864
HpySE526I	ACGT	2 cut(s)	351, 807
Hsp92I	GRCGYC	3 cut(s)	228, 408, 807
Hsp92II	CATG	1 cut(s)	652
HspAI	GCGC	2 cut(s)	273, 418
KspAI	GTTAAC	1 cut(s)	123
KspI	CCGCGG	1 cut(s)	630
Kzo9I	GATC	3 cut(s)	260, 515, 697
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	2 cut(s)	17, 762
LweI	GCATC	2 cut(s)	260, 429
MaeI	CTAG	4 cut(s)	288, 590, 654, 840
MaeII	ACGT	2 cut(s)	351, 807
MaeIII	GTNAC	2 cut(s)	224, 497
MalI	GATC	3 cut(s)	262, 517, 699
MboI	GATC	3 cut(s)	260, 515, 697
MboII	GAAGA	7 cut(s)	177, 255, 349, 536, 544, 674, 692
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	3 cut(s)	9, 83, 367
MlyI	GAGTC	2 cut(s)	114, 615
MmeI	TCCRAC	1 cut(s)	643
MseI	TTAA	3 cut(s)	122, 636, 756
MspA1I	CMGCKG	1 cut(s)	629
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	9 cut(s)	48, 68, 165, 196, 216, 234, 437, 469, 585
MspR9I	CCNGG	2 cut(s)	166, 251
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	5 cut(s)	53, 166, 478, 590, 784
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	260, 515, 697
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	3 cut(s)	248, 583, 614
NmuCI	GTSAC	2 cut(s)	224, 497
PceI	AGGCCT	1 cut(s)	838
PfeI	GAWTC	3 cut(s)	98, 725, 731
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	7, 232, 628, 777
PleI	GAGTC	2 cut(s)	113, 615
PpsI	GAGTC	2 cut(s)	113, 615
PpuMI	RGGWCCY	1 cut(s)	613
PshAI	GACNNNNGTC	1 cut(s)	288
PsiI	TTATAA	1 cut(s)	674
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	3 cut(s)	248, 583, 614
PspPI	GGNCC	2 cut(s)	50, 613
PspPPI	RGGWCCY	1 cut(s)	613
PstI	CTGCAG	2 cut(s)	45, 448
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SacII	CCGCGG	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	122, 636, 756
SatI	GCNGC	4 cut(s)	6, 231, 627, 776
Sau3AI	GATC	3 cut(s)	260, 515, 697
Sau96I	GGNCC	2 cut(s)	50, 613
SchI	GAGTC	2 cut(s)	114, 615
ScrFI	CCNGG	2 cut(s)	166, 251
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	2 cut(s)	260, 429
SfcI	CTRYAG	2 cut(s)	41, 444
Sfr303I	CCGCGG	1 cut(s)	630
SgrAI	CRCCGGYG	1 cut(s)	233
SgrBI	CCGCGG	1 cut(s)	630
SinI	GGWCC	2 cut(s)	50, 613
SmlI	CTYRAG	2 cut(s)	716, 755
SmoI	CTYRAG	2 cut(s)	716, 755
Sse9I	AATT	3 cut(s)	9, 83, 367
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	4 cut(s)	18, 231, 627, 629
SspMI	CTAG	4 cut(s)	288, 590, 654, 840
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	2 cut(s)	164, 249
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	2 cut(s)	354, 810
TaqI	TCGA	7 cut(s)	292, 455, 487, 505, 555, 642, 696
TasI	AATT	3 cut(s)	9, 83, 367
TauI	GCSGC	2 cut(s)	233, 629
TfiI	GAWTC	3 cut(s)	98, 725, 731
Tru1I	TTAA	3 cut(s)	122, 636, 756
Tru9I	TTAA	3 cut(s)	122, 636, 756
TscAI	CASTG	2 cut(s)	319, 453
TseFI	GTSAC	2 cut(s)	224, 497
TseI	GCWGC	2 cut(s)	5, 775
Tsp45I	GTSAC	2 cut(s)	224, 497
TspDTI	ATGAA	3 cut(s)	313, 692, 784
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	2 cut(s)	319, 453
Van91I	CCANNNNNTGG	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	2 cut(s)	50, 613
XapI	RAATTY	1 cut(s)	83
XspI	CTAG	4 cut(s)	288, 590, 654, 840
ZraI	GACGTC	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.